prot_P-wetherbeei_contig18702.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig18702.1.1
Unique Nameprot_P-wetherbeei_contig18702.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length257
Homology
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BLAST of mRNA_P-wetherbeei_contig18702.1.1 vs. uniprot
Match: A0A836C849_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C849_9STRA)

HSP 1 Score: 158 bits (399), Expect = 3.070e-40
Identity = 109/269 (40.52%), Postives = 136/269 (50.56%), Query Frame = 0 
Query:    1 RYTVVNRSVSPIVIRQFGADTTVELAPGTACPLHWSDARLEGALAVTLP-ASGR-GGGYMWSGPIDVSNVGTFPVAVRARQDAFSSDGGVYRQASHHPKIVYDGGDLDPSLDASGXXXXXXXXXSRVGSAYGA------QQTGNKVVKVEINLGGTTEAAGGGDGGLSRDVATAVHAASAAVQIIFEEEAD----QQTDRFPTYRLENRTLRRVFYAQLGVPGPGCMLPPESSCLFGWDQPCPPD-LSHLLLRAALEPLSSMHGQRLAR 256
            RYTV NR  + + I+Q+G+   + LAPG   PLHW+DARL   LAVT+P A G  G GY WSGPI +  +G FPV VRA+ D FS                            +           RVG  YGA      QQ  +    V   +    E    GDG             S   +++FEEE D      +  FPTYRLEN T   ++YAQ+GVPGPG +LPP ++CLFGWD PCPPD  + L L AA  PLS+  G+RLAR
Sbjct: 4694 RYTVTNRGAATLAIKQYGSSQQLLLAPGATVPLHWADARLNPLLAVTVPRAEGACGEGYRWSGPIALDRMGMFPVHVRAKSDLFSGGAAAXXXXXXXXXXXXXXXXXXXXXTPTSPS-------DRVGK-YGALARQQAQQRSSPGSPVAAAVAEEPE----GDG-------------SEWNKVVFEEEHDGGGATGSGSFPTYRLENHTSHAIYYAQVGVPGPGDLLPPRTACLFGWDFPCPPDPAAQLRLAAAPLPLSTATGERLAR 4937
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18702.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C849_9STRA3.070e-4040.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009543Vacuolar protein sorting-associated protein 13, VPS13 adaptor binding domainPFAMPF06650SHR-BDcoord: 1..79
e-value: 4.0E-9
score: 36.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..129

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18702contigP-wetherbeei_contig18702:236..1248 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18702.1.1mRNA_P-wetherbeei_contig18702.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig18702 236..1248 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig18702.1.1 ID=prot_P-wetherbeei_contig18702.1.1|Name=mRNA_P-wetherbeei_contig18702.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=257bp
RYTVVNRSVSPIVIRQFGADTTVELAPGTACPLHWSDARLEGALAVTLPA
SGRGGGYMWSGPIDVSNVGTFPVAVRARQDAFSSDGGVYRQASHHPKIVY
DGGDLDPSLDASGSGGGGGGNGSRVGSAYGAQQTGNKVVKVEINLGGTTE
AAGGGDGGLSRDVATAVHAASAAVQIIFEEEADQQTDRFPTYRLENRTLR
RVFYAQLGVPGPGCMLPPESSCLFGWDQPCPPDLSHLLLRAALEPLSSMH
GQRLAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009543VPS13_VAB