mRNA_P-wetherbeei_contig18702.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18702.1.1
Unique NamemRNA_P-wetherbeei_contig18702.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18702.1.1 vs. uniprot
Match: A0A836C849_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C849_9STRA)

HSP 1 Score: 158 bits (399), Expect = 3.070e-40
Identity = 109/269 (40.52%), Postives = 136/269 (50.56%), Query Frame = 1 
Query:    1 RYTVVNRSVSPIVIRQFGADTTVELAPGTACPLHWSDARLEGALAVTLP-ASGR-GGGYMWSGPIDVSNVGTFPVAVRARQDAFSSDGGVYRQASHHPKIVYDGGDLDPSLDASGXXXXXXXXXSRVGSAYGA------QQTGNKVVKVEINLGGTTEAAGGGDGGLSRDVATAVHAASAAVQIIFEEEAD----QQTDRFPTYRLENRTLRRVFYAQLGVPGPGCMLPPESSCLFGWDQPCPPD-LSHLLLRAALEPLSSMHGQRLAR 768
            RYTV NR  + + I+Q+G+   + LAPG   PLHW+DARL   LAVT+P A G  G GY WSGPI +  +G FPV VRA+ D FS                            +           RVG  YGA      QQ  +    V   +    E    GDG             S   +++FEEE D      +  FPTYRLEN T   ++YAQ+GVPGPG +LPP ++CLFGWD PCPPD  + L L AA  PLS+  G+RLAR
Sbjct: 4694 RYTVTNRGAATLAIKQYGSSQQLLLAPGATVPLHWADARLNPLLAVTVPRAEGACGEGYRWSGPIALDRMGMFPVHVRAKSDLFSGGAAAXXXXXXXXXXXXXXXXXXXXXTPTSPS-------DRVGK-YGALARQQAQQRSSPGSPVAAAVAEEPE----GDG-------------SEWNKVVFEEEHDGGGATGSGSFPTYRLENHTSHAIYYAQVGVPGPGDLLPPRTACLFGWDFPCPPDPAAQLRLAAAPLPLSTATGERLAR 4937
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18702.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C849_9STRA3.070e-4040.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18702contigP-wetherbeei_contig18702:236..1248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog4787.PITG_18106T0
PFAMsChorein_N,Glyco_transf_22,PH,SHR-BD,VPS13,VPS13_C
Model size771
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.96e-05
EggNOG OGsCOG5043@1|root,COG5307@1|root,KOG1796@1|root,KOG0930@2759|Eukaryota,KOG1796@2759|Eukaryota,KOG1809@2759|Eukaryota,3QB47@4776|Peronosporales
DescriptionPH domain
Cds size771
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186153.4406652-CDS-P-wetherbeei_contig18702:235..4811683186153.4406652-CDS-P-wetherbeei_contig18702:235..481Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18702 236..481 -
1683186153.4499705-CDS-P-wetherbeei_contig18702:723..12481683186153.4499705-CDS-P-wetherbeei_contig18702:723..1248Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18702 724..1248 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18702.1.1prot_P-wetherbeei_contig18702.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18702 236..1248 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18702.1.1

>prot_P-wetherbeei_contig18702.1.1 ID=prot_P-wetherbeei_contig18702.1.1|Name=mRNA_P-wetherbeei_contig18702.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=257bp
RYTVVNRSVSPIVIRQFGADTTVELAPGTACPLHWSDARLEGALAVTLPA
SGRGGGYMWSGPIDVSNVGTFPVAVRARQDAFSSDGGVYRQASHHPKIVY
DGGDLDPSLDASGSGGGGGGNGSRVGSAYGAQQTGNKVVKVEINLGGTTE
AAGGGDGGLSRDVATAVHAASAAVQIIFEEEADQQTDRFPTYRLENRTLR
RVFYAQLGVPGPGCMLPPESSCLFGWDQPCPPDLSHLLLRAALEPLSSMH
GQRLAR*
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mRNA from alignment at P-wetherbeei_contig18702:236..1248-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18702.1.1 ID=mRNA_P-wetherbeei_contig18702.1.1|Name=mRNA_P-wetherbeei_contig18702.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1013bp|location=Sequence derived from alignment at P-wetherbeei_contig18702:236..1248- (Phaeothamnion wetherbeei SAG_119_79)
CGTTACACCGTCGTCAACCGCTCGGTGTCCCCTATCGTCATCCGGCAGTT
TGGCGCCGACACAACCGTCGAGCTGGCGCCGGGCACCGCTTGCCCGCTGC
ACTGGAGCGACGCGCGGCTAGAGGGGGCGCTGGCGGTCACGTTGCCAGCG
AGCGGCCGCGGCGGCGGTTACATGTGGAGCGGCCCCATCGACGTGTCCAA
TGTCGGGACGTTCCCCGTGGCGGTGCGGGCGCGGCAGGACGCTTTCAGCT
CCGACGGCGGCGTCTACCGCCAGGCCAGCCACCACCCCAAGATTGTCTAC
GACGGCGGCGACCTCGACCCGTCGTTGGATGCGAGCGGGAGCGGTGGCGG
CGGCGGTGGCAACGGTAGCAGGGTAGGATCGGCGTACGGGGCGCAGCAGA
CGGGCAACAAGGTGGTCAAGGTGGAGATCAACCTCGGAGGGACGACGGAG
GCGGCGGGTGGTGGCGACGGCGGGCTGAGCCGGGACGTGGCGACAGCGGT
GCACGCGGCCAGCGCGGCGGTGCAGGTGAGGCGATGAACAATGATTTGGG
AGGCGAGCCTTTGAGGACTGAATAGCCTCGGTAGTTCTGCTGTTCGTTTC
ATTTTATCGAATAGCTTACTCATTTATCGGCCATTGAGCGCTACGAAATT
GATTGTGTTGCCTTGAGAATCATCAGAGCTCGTGTTACGGCATTCATAAT
GAATGTTTGTAAATTTTATATTGTCTGCCCACCCATCCGTTCTACTGTAC
TGTGCGTCTGGGCACAGATTATCTTCGAGGAGGAGGCGGACCAGCAGACG
GACCGCTTCCCGACGTATCGCCTCGAGAACCGCACCCTGCGGCGCGTCTT
CTACGCGCAGCTTGGGGTGCCGGGCCCCGGCTGCATGCTGCCGCCCGAGA
GCTCGTGCCTATTCGGGTGGGACCAACCGTGCCCGCCCGACCTCAGCCAC
CTTCTGCTGCGGGCGGCACTCGAGCCCCTCTCGTCGATGCACGGCCAGCG
GCTGGCGAGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18702:236..1248-

>mRNA_P-wetherbeei_contig18702.1.1 ID=mRNA_P-wetherbeei_contig18702.1.1|Name=mRNA_P-wetherbeei_contig18702.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=771bp|location=Sequence derived from alignment at P-wetherbeei_contig18702:236..1248- (Phaeothamnion wetherbeei SAG_119_79)
CGTTACACCGTCGTCAACCGCTCGGTGTCCCCTATCGTCATCCGGCAGTT
TGGCGCCGACACAACCGTCGAGCTGGCGCCGGGCACCGCTTGCCCGCTGC
ACTGGAGCGACGCGCGGCTAGAGGGGGCGCTGGCGGTCACGTTGCCAGCG
AGCGGCCGCGGCGGCGGTTACATGTGGAGCGGCCCCATCGACGTGTCCAA
TGTCGGGACGTTCCCCGTGGCGGTGCGGGCGCGGCAGGACGCTTTCAGCT
CCGACGGCGGCGTCTACCGCCAGGCCAGCCACCACCCCAAGATTGTCTAC
GACGGCGGCGACCTCGACCCGTCGTTGGATGCGAGCGGGAGCGGTGGCGG
CGGCGGTGGCAACGGTAGCAGGGTAGGATCGGCGTACGGGGCGCAGCAGA
CGGGCAACAAGGTGGTCAAGGTGGAGATCAACCTCGGAGGGACGACGGAG
GCGGCGGGTGGTGGCGACGGCGGGCTGAGCCGGGACGTGGCGACAGCGGT
GCACGCGGCCAGCGCGGCGGTGCAGATTATCTTCGAGGAGGAGGCGGACC
AGCAGACGGACCGCTTCCCGACGTATCGCCTCGAGAACCGCACCCTGCGG
CGCGTCTTCTACGCGCAGCTTGGGGTGCCGGGCCCCGGCTGCATGCTGCC
GCCCGAGAGCTCGTGCCTATTCGGGTGGGACCAACCGTGCCCGCCCGACC
TCAGCCACCTTCTGCTGCGGGCGGCACTCGAGCCCCTCTCGTCGATGCAC
GGCCAGCGGCTGGCGAGGTGA
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