mRNA_P-wetherbeei_contig1870.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1870.2.1
Unique NamemRNA_P-wetherbeei_contig1870.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1870.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1870contigP-wetherbeei_contig1870:2991..4377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1201
Hectar predicted targeting categoryother localisation
Exons3
Cds size690
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186153.3508513-UTR-P-wetherbeei_contig1870:2990..30911683186153.3508513-UTR-P-wetherbeei_contig1870:2990..3091Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1870 2991..3091 +
1683186153.360773-UTR-P-wetherbeei_contig1870:3260..36301683186153.360773-UTR-P-wetherbeei_contig1870:3260..3630Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1870 3261..3630 +
1683186153.3699799-UTR-P-wetherbeei_contig1870:3647..36871683186153.3699799-UTR-P-wetherbeei_contig1870:3647..3687Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1870 3648..3687 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186153.3787882-CDS-P-wetherbeei_contig1870:3687..43771683186153.3787882-CDS-P-wetherbeei_contig1870:3687..4377Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1870 3688..4377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1870.2.1prot_P-wetherbeei_contig1870.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1870 3688..4377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1870.2.1

>prot_P-wetherbeei_contig1870.2.1 ID=prot_P-wetherbeei_contig1870.2.1|Name=mRNA_P-wetherbeei_contig1870.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=230bp
MAWDAASSGGQSRSASVSESSRNVLAERSRGSGGGGGGEGGGNNNGAANS
RRRGSNTFPVRTASLSGVRRDRWGSGGDRVDDSGLRNDSGKHSNSGQRSG
GGRRNGCGGAASDTEFLCFQPHEYDEFVFAIERRRRRGSGGEGADARSGS
EGGTSGERVAARDPNFGHQGSVRRQLPADVPGFGGSSPDRYSPDGIERPE
SAFSYTAGAGRGVPEYPSAMLATVDWDESP
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mRNA from alignment at P-wetherbeei_contig1870:2991..4377+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1870.2.1 ID=mRNA_P-wetherbeei_contig1870.2.1|Name=mRNA_P-wetherbeei_contig1870.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1387bp|location=Sequence derived from alignment at P-wetherbeei_contig1870:2991..4377+ (Phaeothamnion wetherbeei SAG_119_79)
AGAACGATGAGCGAGTGTACATTTGCACCAGAGATCCTGCCTTGCCCACC
CTCGATGGGGGGCCAAAAGCTGGCGGGAAGCCGTTGGCCTGTGGGCGACA
GGTGTGTGGGCACAGCAGCCAGGCAGAGATTGAGTCATTCGATATCGCCC
CTGGTCTTTCGGCAACTTCAGTGAAACTGTTGGCGCTCGGCCCTTGACTC
AGACATCACCGCGCTCTCTTTTCTTCTCGTGGGCGATGCTCGCCGAACGA
TGAAAATCAAATGCCCGCAGGCTCTATCAGCAAGCCGACATCATGCGCAA
CCGTCAGCGGGTTCGGGACGAGGCCGACGCTGCGAAGCGGGAGCGCGAGA
CCGCCGAAGCGTGCACCTTCAAACCGCAAGTGAAGCAAGTGAAGGGCCCG
CCGATGCCGTCGTCCGCCGCCGCCGCTCCCGTTACCGACGCAACTGCTGC
AGAAGCTGGCGCGGGCGGAACTTCCGCCGCGGGCACGACTGCCAGCAGGC
GGTGGCGGAGCCGGGAGCGGTTCGACGACCTCCGCTCGGAGTCTGACGGG
GCAGCGACTGTGGAGGCGATCCGGCGGCAGCAGGGCCAGAATGGGCGGCA
GCGCTCTCAGAGCCTGACCGAAGACCGCGCCGCCGGGTTTGCCGCCCTGT
TTCGGAGCGAGGGCGGCGGTGGCGGCAGCGCAAGAAACAGCGCGGCAATG
GCATGGGATGCGGCGAGCTCCGGCGGCCAGAGCCGCAGCGCATCCGTTTC
GGAAAGTTCTCGTAACGTTTTAGCGGAGCGCAGTCGTGGCAGCGGCGGTG
GCGGCGGGGGCGAAGGCGGCGGCAATAATAACGGTGCCGCCAACAGCCGC
CGCCGCGGCAGCAACACCTTTCCCGTTCGCACGGCGTCTCTGAGTGGGGT
TCGTCGTGACCGTTGGGGCAGTGGCGGAGACCGCGTGGATGACAGCGGGC
TGCGCAACGACAGCGGGAAGCACAGTAACAGCGGGCAGCGCAGCGGCGGC
GGGCGGCGCAACGGCTGCGGCGGCGCAGCGAGCGACACCGAGTTTCTCTG
CTTCCAACCGCATGAATACGACGAGTTTGTCTTTGCCATCGAAAGGCGCC
GGCGCCGCGGCAGCGGAGGCGAGGGAGCGGATGCCCGGAGCGGTAGCGAG
GGCGGCACCAGCGGCGAGAGAGTCGCTGCCAGAGATCCAAACTTCGGTCA
CCAGGGCAGTGTCCGGCGGCAGCTGCCTGCCGATGTCCCCGGCTTTGGCG
GCTCCAGCCCCGATCGGTATAGCCCCGATGGCATCGAACGCCCGGAATCC
GCATTCTCTTACACCGCTGGCGCTGGGCGCGGTGTTCCGGAGTACCCGTC
GGCTATGTTGGCGACGGTGGATTGGGATGAAAGCCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1870:2991..4377+

>mRNA_P-wetherbeei_contig1870.2.1 ID=mRNA_P-wetherbeei_contig1870.2.1|Name=mRNA_P-wetherbeei_contig1870.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=690bp|location=Sequence derived from alignment at P-wetherbeei_contig1870:2991..4377+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCATGGGATGCGGCGAGCTCCGGCGGCCAGAGCCGCAGCGCATCCGT
TTCGGAAAGTTCTCGTAACGTTTTAGCGGAGCGCAGTCGTGGCAGCGGCG
GTGGCGGCGGGGGCGAAGGCGGCGGCAATAATAACGGTGCCGCCAACAGC
CGCCGCCGCGGCAGCAACACCTTTCCCGTTCGCACGGCGTCTCTGAGTGG
GGTTCGTCGTGACCGTTGGGGCAGTGGCGGAGACCGCGTGGATGACAGCG
GGCTGCGCAACGACAGCGGGAAGCACAGTAACAGCGGGCAGCGCAGCGGC
GGCGGGCGGCGCAACGGCTGCGGCGGCGCAGCGAGCGACACCGAGTTTCT
CTGCTTCCAACCGCATGAATACGACGAGTTTGTCTTTGCCATCGAAAGGC
GCCGGCGCCGCGGCAGCGGAGGCGAGGGAGCGGATGCCCGGAGCGGTAGC
GAGGGCGGCACCAGCGGCGAGAGAGTCGCTGCCAGAGATCCAAACTTCGG
TCACCAGGGCAGTGTCCGGCGGCAGCTGCCTGCCGATGTCCCCGGCTTTG
GCGGCTCCAGCCCCGATCGGTATAGCCCCGATGGCATCGAACGCCCGGAA
TCCGCATTCTCTTACACCGCTGGCGCTGGGCGCGGTGTTCCGGAGTACCC
GTCGGCTATGTTGGCGACGGTGGATTGGGATGAAAGCCCG
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