mRNA_P-wetherbeei_contig1870.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1870.4.1
Unique NamemRNA_P-wetherbeei_contig1870.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1870.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1870contigP-wetherbeei_contig1870:5113..6115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size829
Hectar predicted targeting categoryother localisation
Exons2
Cds size828
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186153.3034534-CDS-P-wetherbeei_contig1870:5112..58961683186153.3034534-CDS-P-wetherbeei_contig1870:5112..5896Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1870 5113..5896 +
1683186153.3131735-CDS-P-wetherbeei_contig1870:6070..61141683186153.3131735-CDS-P-wetherbeei_contig1870:6070..6114Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1870 6071..6114 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1870.4.1prot_P-wetherbeei_contig1870.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1870 5113..6114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1870.4.1

>prot_P-wetherbeei_contig1870.4.1 ID=prot_P-wetherbeei_contig1870.4.1|Name=mRNA_P-wetherbeei_contig1870.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=276bp
REDGGCSWLGPHGSSSGVRDSGKDGAPNGVADNAEPFQRLDWQHHSGALK
EYIDDDSYAGEDCHYVDEDGQYADGDGRHGDGDGLYEDEMAPSLRFDGAV
RDSADWRNGDGGGGGGGSRACGRMNVQEDGSYNHQNGGGYGDKGCFEPPY
PRDGHGRYAAPQDGWSVDGGSRSGRRTSFHGGSYGGVAGTARSHGRQDRR
SKGEESPHRQRHGLSGSFDGASAGEYSGQSGRRSGGRPHRSASAPAMPRP
DRSPLAFDYNAGHDGSEGRPAWADGP
back to top

mRNA from alignment at P-wetherbeei_contig1870:5113..6115+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1870.4.1 ID=mRNA_P-wetherbeei_contig1870.4.1|Name=mRNA_P-wetherbeei_contig1870.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1003bp|location=Sequence derived from alignment at P-wetherbeei_contig1870:5113..6115+ (Phaeothamnion wetherbeei SAG_119_79)
AGAGAAGACGGCGGCTGCAGTTGGCTCGGTCCGCACGGCAGCAGCAGTGG
CGTCCGCGACAGCGGTAAGGACGGTGCTCCGAATGGCGTTGCCGATAATG
CCGAGCCATTTCAGCGCCTCGACTGGCAGCACCATTCTGGCGCCCTAAAG
GAATATATTGACGATGACTCTTATGCGGGAGAAGATTGCCATTATGTAGA
CGAAGATGGCCAATACGCGGATGGAGATGGCCGTCACGGGGACGGAGACG
GCCTGTACGAGGACGAAATGGCCCCTTCACTGCGTTTCGACGGCGCTGTG
CGTGATAGCGCTGACTGGCGCAACGGCGACGGCGGTGGTGGCGGCGGTGG
CTCGCGCGCATGCGGACGTATGAACGTGCAAGAAGATGGTTCTTACAATC
ACCAGAATGGTGGCGGTTACGGCGATAAAGGTTGCTTCGAGCCGCCGTAT
CCGAGAGACGGCCATGGCCGGTACGCTGCGCCACAGGATGGATGGTCCGT
AGACGGCGGGAGCCGCAGCGGCCGCCGTACCAGCTTCCACGGCGGCAGCT
ACGGCGGCGTCGCCGGCACTGCACGCAGCCACGGAAGGCAAGACCGCAGA
AGCAAGGGAGAGGAAAGCCCACACCGGCAGCGCCATGGCCTCAGTGGCAG
TTTCGACGGGGCCAGTGCCGGCGAGTACAGCGGGCAATCCGGCAGGCGCA
GCGGCGGGCGGCCGCACCGATCGGCATCGGCGCCGGCGATGCCTCGGCCG
GACCGCTCCCCGCTCGCCTTTGACTACAACGCAGGTGAGTGGAGCTGAGC
AGTGTTGCTGTCGGTGCCAGCGAAAGGCATATTGAGTACCTCTTTGTCTT
CCTAAGCGGGTGGGTGGATTTCCGGGCAGTTTGGGGCAGTAATTGTTTGT
AAGTGTCAATGATCGCGACCGTCCTCCGACGCCTTCCGCGTTTTGCTGCG
TACCGCAGGCCATGACGGCAGCGAGGGGCGGCCGGCCTGGGCAGATGGGC
CAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1870:5113..6115+

>mRNA_P-wetherbeei_contig1870.4.1 ID=mRNA_P-wetherbeei_contig1870.4.1|Name=mRNA_P-wetherbeei_contig1870.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=828bp|location=Sequence derived from alignment at P-wetherbeei_contig1870:5113..6115+ (Phaeothamnion wetherbeei SAG_119_79)
AGAGAAGACGGCGGCTGCAGTTGGCTCGGTCCGCACGGCAGCAGCAGTGG
CGTCCGCGACAGCGGTAAGGACGGTGCTCCGAATGGCGTTGCCGATAATG
CCGAGCCATTTCAGCGCCTCGACTGGCAGCACCATTCTGGCGCCCTAAAG
GAATATATTGACGATGACTCTTATGCGGGAGAAGATTGCCATTATGTAGA
CGAAGATGGCCAATACGCGGATGGAGATGGCCGTCACGGGGACGGAGACG
GCCTGTACGAGGACGAAATGGCCCCTTCACTGCGTTTCGACGGCGCTGTG
CGTGATAGCGCTGACTGGCGCAACGGCGACGGCGGTGGTGGCGGCGGTGG
CTCGCGCGCATGCGGACGTATGAACGTGCAAGAAGATGGTTCTTACAATC
ACCAGAATGGTGGCGGTTACGGCGATAAAGGTTGCTTCGAGCCGCCGTAT
CCGAGAGACGGCCATGGCCGGTACGCTGCGCCACAGGATGGATGGTCCGT
AGACGGCGGGAGCCGCAGCGGCCGCCGTACCAGCTTCCACGGCGGCAGCT
ACGGCGGCGTCGCCGGCACTGCACGCAGCCACGGAAGGCAAGACCGCAGA
AGCAAGGGAGAGGAAAGCCCACACCGGCAGCGCCATGGCCTCAGTGGCAG
TTTCGACGGGGCCAGTGCCGGCGAGTACAGCGGGCAATCCGGCAGGCGCA
GCGGCGGGCGGCCGCACCGATCGGCATCGGCGCCGGCGATGCCTCGGCCG
GACCGCTCCCCGCTCGCCTTTGACTACAACGCAGGCCATGACGGCAGCGA
GGGGCGGCCGGCCTGGGCAGATGGGCCA
back to top