mRNA_P-wetherbeei_contig18689.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18689.1.1
Unique NamemRNA_P-wetherbeei_contig18689.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18689.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18689contigP-wetherbeei_contig18689:2..1334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1333
Hectar predicted targeting categoryother localisation
Exons1
Cds size1038
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186152.6833682-UTR-P-wetherbeei_contig18689:1..1581683186152.6833682-UTR-P-wetherbeei_contig18689:1..158Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18689 2..158 +
1683186152.704605-UTR-P-wetherbeei_contig18689:1196..13341683186152.704605-UTR-P-wetherbeei_contig18689:1196..1334Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18689 1197..1334 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186152.692977-CDS-P-wetherbeei_contig18689:158..11961683186152.692977-CDS-P-wetherbeei_contig18689:158..1196Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18689 159..1196 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18689.1.1prot_P-wetherbeei_contig18689.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18689 159..1196 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18689.1.1

>prot_P-wetherbeei_contig18689.1.1 ID=prot_P-wetherbeei_contig18689.1.1|Name=mRNA_P-wetherbeei_contig18689.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=346bp
MRGVALERESTDYEYAHVYITNCVFRDFAGVQNGSALWSNGGEMVISDST
FSGNYARGSIGAGGGAIFAGGSTVTITDTSFLNNTASHMGGAIAMNGTNQ
ADTGSEHHDDFKIDGWLTCKRCTFSGNRALGVDSLYAKGGAIYGAESVSM
TVTDSTFSSNSAGGGRGGGIFSEGIDNLLLKDTTFTGDSASDGDVSMRNT
ALKLDGTTISNFTSTIDGTQSSGCDAVAYQGSQVSVVVVGSNANDTSCGK
LQDDIEEAKKAAENNDDGADDDAAAGRSDGGSGGGGSNGLMIGGICAAVG
AAILLAFCGKSWHNNKKQKARDAAIAAKANLPNAGATVVVQAHPI*
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mRNA from alignment at P-wetherbeei_contig18689:2..1334+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18689.1.1 ID=mRNA_P-wetherbeei_contig18689.1.1|Name=mRNA_P-wetherbeei_contig18689.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1333bp|location=Sequence derived from alignment at P-wetherbeei_contig18689:2..1334+ (Phaeothamnion wetherbeei SAG_119_79)
GACGATCCAGTCGTCAGCCGGAAACCAATTCACCATCTCGCCGGATCCGG
CCTTTGAGGGCGATGCCCTCATCGCCCAGGAGCAGGGGTCGTTTCTGTAC
CTTAACAACCTCATTTTCACCGGCCGCGAGACAATCACTGGTGCTGTCCA
CGACGGGATGCGTGGCGTCGCCCTGGAGCGTGAATCCACCGACTACGAAT
ACGCCCACGTCTACATAACGAACTGCGTCTTCCGGGACTTTGCTGGCGTC
CAAAACGGCTCCGCACTGTGGAGCAATGGCGGGGAGATGGTTATCTCCGA
TAGCACCTTCTCAGGCAATTATGCCCGCGGCTCCATCGGTGCTGGTGGCG
GCGCCATCTTCGCCGGCGGCAGCACCGTCACCATCACCGACACGTCGTTC
CTCAACAACACAGCTAGCCACATGGGTGGCGCCATTGCCATGAACGGCAC
AAACCAGGCCGACACGGGCTCGGAGCACCACGACGACTTCAAGATTGACG
GCTGGCTTACCTGCAAGCGCTGTACGTTCAGCGGAAACCGCGCTCTCGGC
GTCGATTCCCTCTACGCGAAGGGCGGCGCCATTTATGGCGCCGAAAGCGT
CAGCATGACTGTCACCGACAGCACCTTTTCTTCGAACAGCGCCGGCGGCG
GCCGCGGCGGCGGCATCTTCAGCGAGGGCATCGACAATCTGCTGCTGAAG
GACACCACCTTCACTGGGGATTCGGCGTCAGATGGAGACGTTTCAATGCG
CAATACAGCACTGAAGCTCGATGGCACCACCATCTCCAACTTCACGTCCA
CCATCGACGGCACGCAGTCGTCGGGCTGCGACGCCGTTGCTTACCAGGGG
TCGCAGGTCAGCGTGGTGGTGGTCGGCAGCAACGCCAACGACACGTCGTG
CGGCAAGCTGCAGGACGACATTGAGGAGGCCAAAAAGGCTGCCGAAAACA
ACGACGACGGCGCCGACGACGACGCCGCCGCGGGCCGCAGCGACGGCGGC
AGCGGCGGCGGCGGCAGCAACGGCCTCATGATTGGCGGCATCTGCGCGGC
CGTCGGCGCTGCCATTTTGCTGGCATTTTGCGGCAAGTCGTGGCACAACA
ACAAGAAGCAAAAGGCGCGGGACGCGGCCATCGCGGCGAAGGCGAACCTG
CCGAACGCGGGCGCGACGGTGGTGGTGCAGGCGCATCCCATCTAGCGAAG
AAAGAAAAGGGGAAGAATGCGGGGGTTGTCAGTTTGATGGGAAAGAGAAG
CTGAGGCGATGGAAGGGGTGCCGGGGCGCACGAGGAGACTAGAGGGGGCG
GACGCGTGCGTGCGCTTGGGCGGCGGGCCTGTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18689:2..1334+

>mRNA_P-wetherbeei_contig18689.1.1 ID=mRNA_P-wetherbeei_contig18689.1.1|Name=mRNA_P-wetherbeei_contig18689.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1038bp|location=Sequence derived from alignment at P-wetherbeei_contig18689:2..1334+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTGGCGTCGCCCTGGAGCGTGAATCCACCGACTACGAATACGCCCA
CGTCTACATAACGAACTGCGTCTTCCGGGACTTTGCTGGCGTCCAAAACG
GCTCCGCACTGTGGAGCAATGGCGGGGAGATGGTTATCTCCGATAGCACC
TTCTCAGGCAATTATGCCCGCGGCTCCATCGGTGCTGGTGGCGGCGCCAT
CTTCGCCGGCGGCAGCACCGTCACCATCACCGACACGTCGTTCCTCAACA
ACACAGCTAGCCACATGGGTGGCGCCATTGCCATGAACGGCACAAACCAG
GCCGACACGGGCTCGGAGCACCACGACGACTTCAAGATTGACGGCTGGCT
TACCTGCAAGCGCTGTACGTTCAGCGGAAACCGCGCTCTCGGCGTCGATT
CCCTCTACGCGAAGGGCGGCGCCATTTATGGCGCCGAAAGCGTCAGCATG
ACTGTCACCGACAGCACCTTTTCTTCGAACAGCGCCGGCGGCGGCCGCGG
CGGCGGCATCTTCAGCGAGGGCATCGACAATCTGCTGCTGAAGGACACCA
CCTTCACTGGGGATTCGGCGTCAGATGGAGACGTTTCAATGCGCAATACA
GCACTGAAGCTCGATGGCACCACCATCTCCAACTTCACGTCCACCATCGA
CGGCACGCAGTCGTCGGGCTGCGACGCCGTTGCTTACCAGGGGTCGCAGG
TCAGCGTGGTGGTGGTCGGCAGCAACGCCAACGACACGTCGTGCGGCAAG
CTGCAGGACGACATTGAGGAGGCCAAAAAGGCTGCCGAAAACAACGACGA
CGGCGCCGACGACGACGCCGCCGCGGGCCGCAGCGACGGCGGCAGCGGCG
GCGGCGGCAGCAACGGCCTCATGATTGGCGGCATCTGCGCGGCCGTCGGC
GCTGCCATTTTGCTGGCATTTTGCGGCAAGTCGTGGCACAACAACAAGAA
GCAAAAGGCGCGGGACGCGGCCATCGCGGCGAAGGCGAACCTGCCGAACG
CGGGCGCGACGGTGGTGGTGCAGGCGCATCCCATCTAG
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