prot_P-wetherbeei_contig18683.2.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig18683.2.1
Unique Nameprot_P-wetherbeei_contig18683.2.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length212
Homology
BLAST of mRNA_P-wetherbeei_contig18683.2.1 vs. uniprot
Match: T0HU73_9SPHN (HTH tetR-type domain-containing protein n=2 Tax=Sphingomonadaceae TaxID=41297 RepID=T0HU73_9SPHN)

HSP 1 Score: 197 bits (500), Expect = 2.120e-60
Identity = 97/192 (50.52%), Postives = 133/192 (69.27%), Query Frame = 0
Query:   11 RRHRILDAAALLIRSTRGTDFSMRALAEAAEVSPATPYNLFTSKEGLLYALLSRSLDEITLRGLAFQSNDPLERVLEAAAQAADIFLHDPDFMRPLYQFLLGVVDPIHRPKFIERSLAYWRSALASAEQAHLLVPDFEADVLVYTLMAHFMGVLEFWIHDDIDGSGFKARVIHDTVLLLLPLADDARRPRLL 202
            RRHRILDAA  LIR T GTDFS+R LA  AEV+PATP+NLF+SKE LLYALLSRSLD I   GL F+S + L  ++EAA  A D+F  DP+FMRPLY+ LLGV D +HRP+F+ERS+ YW++A+A+     LL  + + + L   + A F+G+LEFW+H + D   F+   ++  +  ++ L D   + ++L
Sbjct:    4 RRHRILDAAERLIRKTGGTDFSVRTLASVAEVAPATPFNLFSSKEALLYALLSRSLDTIISEGLKFKSPNRLFHIVEAATNAVDMFARDPEFMRPLYRVLLGVSDDVHRPRFMERSIGYWKTAVATIPDQKLLSTERQRNFLTAAIQAQFLGLLEFWVHQEFDDDTFRQHSVYGVLSNIMGLLDSENKEQML 195          
BLAST of mRNA_P-wetherbeei_contig18683.2.1 vs. uniprot
Match: UPI001673F2C8 (TetR/AcrR family transcriptional regulator n=1 Tax=Novosphingobium colocasiae TaxID=1256513 RepID=UPI001673F2C8)

HSP 1 Score: 173 bits (438), Expect = 5.390e-51
Identity = 94/202 (46.53%), Postives = 124/202 (61.39%), Query Frame = 0
Query:    1 MSLRARQVDARRHRILDAAALLIRSTRGTDFSMRALAEAAEVSPATPYNLFTSKEGLLYALLSRSLDEITLRGLAFQSNDPLERVLEAAAQAADIFLHDPDFMRPLYQFLLGVVDPIHRPKFIERSLAYWRSALASAEQAHLLVPDFEADVLVYTLMAHFMGVLEFWIHDDIDGSGFKARVIHDTVLLLLPLADDARRPRLL 202
            +S R +Q + RR  ILD A  LIR T GTDF +R LA  A+V+ ATP+NLF SKEGLLY+LL+RSLD+IT  GLAF    P +RV+E    A   FL DP+ +RPLY  LL V  P HRP+F+ R+L +W +A  +A      + D   D +  ++MAHF+GVLE W+H DI    F+ + +  T LL   +       RLL
Sbjct:    4 ISKREQQKNLRRGTILDVAERLIRETGGTDFPIRTLAAQADVAFATPFNLFGSKEGLLYSLLARSLDQITAAGLAFTEPRPADRVIETTRSAVASFLADPELLRPLYLVLLSVSHPDHRPRFMARALRFWHTAARAASDPARTIDDALVDAVARSMMAHFVGVLELWVHRDISDEQFERQTVIGTSLLARAIVSPEDSERLL 205          
BLAST of mRNA_P-wetherbeei_contig18683.2.1 vs. uniprot
Match: A0A4R7P6Z3_9GAMM (TetR family transcriptional regulator n=1 Tax=Panacagrimonas perspica TaxID=381431 RepID=A0A4R7P6Z3_9GAMM)

HSP 1 Score: 167 bits (424), Expect = 2.840e-48
Identity = 96/209 (45.93%), Postives = 130/209 (62.20%), Query Frame = 0
Query:    7 QVDARRHRILDAAALLIRSTRGTDFSMRALAEAAEVSPATPYNLFTSKEGLLYALLSRSLDEI---TLRGLAFQSNDPLERVLEAAAQAADIFLHDPDFMRPLYQFLLGVVDPIHRPKFIERSLAYWRSALASAEQAHLLVPDFEADVLVYTLMAHFMGVLEFWIHDDIDGSGFKARVIHDTVLLLLPLADDARRPRLLRRLREARRAL 212
            Q + R+ RILDAA  LIR T  T+FSM  LAE A +S  TPYNLF SK G+LYALL+RS+D +     RG   +S DP+E VL AA  A D F  DP F RPLYQFLLG+ DP++RP +++R+L YW+ AL    +A  L      D L   ++ + +G L+ W+  ++D   F+A+V++ T +LL  +AD  +R  L  RLR   R L
Sbjct:    6 QKEDRKRRILDAAEALIRKTGTTEFSMAVLAERASLSGPTPYNLFGSKGGILYALLNRSVDGLFSDIARGRG-KSPDPVEMVLHAAQTAGDEFASDPRFYRPLYQFLLGIHDPVNRPAYMDRALFYWKQALLHLAEAGQLPEVISHDQLARMMVVNTLGALDLWVQSELDDDQFRAQVLYGTAVLLYSVADATQRDHLSARLRVLERQL 213          
BLAST of mRNA_P-wetherbeei_contig18683.2.1 vs. uniprot
Match: A0A653IW91_9SPHN (TetR family transcriptional regulator n=1 Tax=Novosphingobium sp. 9U TaxID=2653158 RepID=A0A653IW91_9SPHN)

HSP 1 Score: 148 bits (374), Expect = 3.200e-41
Identity = 77/198 (38.89%), Postives = 120/198 (60.61%), Query Frame = 0
Query:    4 RARQVDARRHRILDAAALLIRSTRGTDFSMRALAEAAEVSPATPYNLFTSKEGLLYALLSRSLDEITLRGLAFQSNDPLERVLEAAAQAADIFLHDPDFMRPLYQFLLGVVDPIHRPKFIERSLAYWRSALASAEQAHLLVPDFEADVLVYTLMAHFMGVLEFWIHDDIDGSGFKARVIHDTVLLLLPLADDARRPRL 201
            R ++ D ++H IL +A  L+R+   T+FSM  L+ +A +S AT YNL  SK  +LYALL+ SLD++ +     Q NDP+E  + A+  AA+ F  D    +PLY++LLGV DP+HRP F+ R+LA+W   LA    A +L P    + L      +F+G L+ W+  ++   GF+A++I+ ++L L  +  +A R RL
Sbjct:    9 REKKKDEKKHTILASAEALVRAQGHTEFSMAELSRSAGLSTATIYNLLQSKASVLYALLNSSLDKV-IAATPAQGNDPVENAIRASEIAANTFTSDTALFKPLYRYLLGVSDPVHRPAFMGRALAFWMEHLAGLRDAGMLPPGVGLEELARDHQIYFLGTLDLWVQGELSDEGFRAQIIYSSILRLYAVPGEAERGRL 205          
BLAST of mRNA_P-wetherbeei_contig18683.2.1 vs. uniprot
Match: UPI001E4B58F2 (TetR/AcrR family transcriptional regulator n=1 Tax=Novosphingobium colocasiae TaxID=1256513 RepID=UPI001E4B58F2)

HSP 1 Score: 130 bits (327), Expect = 1.570e-34
Identity = 74/190 (38.95%), Postives = 107/190 (56.32%), Query Frame = 0
Query:   15 ILDAAALLIRSTRGTDFSMRALAEAAEVSPATPYNLFTSKEGLLYALLSRSLDEITLR-GLAFQSNDPLERVLEAAAQAADIFLHDPDFMRPLYQFLLGVVDPIHRPKFIERSLAYWRSALASAEQAHLLVPDFEADVLVYTLMAHFMGVLEFWIHDDIDGSGFKARVIHDTVLLLLPLADDARRPRLLR 203
            +L AA  LIR T    FS+  LA  +  S A+ YN+  +K  ++YALL+  +D I  + G + +  DP+   L+A+  AA+ F  DPDF+RPLY +LLGV D  HRP F+ RSLA+W + L     A LL P    +      M  F G L+ W+  ++D S F+ +V    ++ LL + D + R RLLR
Sbjct:    1 MLVAAEALIRETGSVSFSVGELARRSNSSVASLYNMIGTKSTIIYALLNEVMDGIIFKSGNSRKLKDPISAALDASEMAANFFTSDPDFLRPLYGYLLGVADETHRPAFMARSLAFWLTRLEPISAAGLLPPQIPLEAFAQDHMLFFAGALDQWVQGELDNSQFEQQVRTAAIMRLLIIDDQSIRERLLR 190          
BLAST of mRNA_P-wetherbeei_contig18683.2.1 vs. uniprot
Match: A0A328XMU4_9BURK (TetR family transcriptional regulator n=3 Tax=Paraburkholderia unamae TaxID=219649 RepID=A0A328XMU4_9BURK)

HSP 1 Score: 128 bits (322), Expect = 1.330e-33
Identity = 77/188 (40.96%), Postives = 102/188 (54.26%), Query Frame = 0
Query:    9 DARRHRILDAAALLIRSTRGTDFSMRALAEAAEVSPATPYNLFTSKEGLLYALLSRSLDEITLRGLAFQSNDPLERVL-EAAAQAADIFLHDPDFMRPLYQFLLGVVDPIHRPKFIERSLAYWRSALASAEQAHLLVPDFEADVLVYTLMAHFMGVLEFWIHDDIDGSGFKARVIHDTVLLLLPLADD 195
            +ARR  I  AA  LIR T  TDFSMR LA+ A +S AT YNL  SK  +LYALL+R  D +   G+A ++   +   L  +A +A   F  DP+F RPL +FLL V DP+HRP F+ R LAYWR  +   E A  L     A      +   F G L+ WIH++     F+  +     LL+L +  D
Sbjct:   10 EARREAIFAAAEALIRRTGHTDFSMRDLAQEAGLSLATAYNLIGSKSTVLYALLNRRADALAEPGVAPKAGVAMHDHLGNSARRAVRQFTGDPEFFRPLMRFLLSVPDPVHRPAFMARGLAYWRGVMQPMESAGRLPDGMRASDFASVVHLVFTGALDMWIHEEYSARRFQQELDKCLALLMLAIRKD 197          
BLAST of mRNA_P-wetherbeei_contig18683.2.1 vs. uniprot
Match: UPI001376D01F (hypothetical protein n=1 Tax=Polycyclovorans algicola TaxID=616992 RepID=UPI001376D01F)

HSP 1 Score: 105 bits (261), Expect = 2.450e-24
Identity = 56/167 (33.53%), Postives = 92/167 (55.09%), Query Frame = 0
Query:   46 TPYNLFTSKEGLLYALLSRSLDEITLRGLAFQSNDPLERVLEAAAQAADIFLHDPDFMRPLYQFLLGVVDPIHRPKFIERSLAYWRSALASAEQAHLLVPDFEADVLVYTLMAHFMGVLEFWIHDDIDGSGFKARVIHDTVLLLLPLADDARRPRLLRRLREARRAL 212
            T YNL  SK  +LY LL+R++D+        +S+DP ++ L AA   A +++ D  ++RPL++F LGV++P HRP  + R+L +W S L +  +A  L        L       F GVL+ W+ +++  +  +A+V +  +L LL L D     RL+  LR+  + L
Sbjct:   53 TLYNLLGSKGAILYGLLNRTMDQFEAATATPESDDPYDQALTAATTVARVYVQDSAYLRPLWRFELGVIEPEHRPVLMNRALKFWASRLGALARAGRLPKGVGLPDLAREYQIFFAGVLDLWVQNELSDAQLEAQVRYGILLRLLALGDSEEHARLMADLRKTHQRL 219          
BLAST of mRNA_P-wetherbeei_contig18683.2.1 vs. uniprot
Match: UPI001FA7566E (TetR/AcrR family transcriptional regulator n=1 Tax=Caulobacter sp. CCUG 60055 TaxID=2100090 RepID=UPI001FA7566E)

HSP 1 Score: 104 bits (260), Expect = 3.280e-24
Identity = 75/196 (38.27%), Postives = 99/196 (50.51%), Query Frame = 0
Query:    1 MSLRARQVDARRHRILDAAALLIRSTRGTDFSMRALAEAAEVSPATPYNLFTSKEGLLYALLSRSLDEITLRGLAFQSNDPLERVLEAAAQAADIFLHDPDFMRPLYQFLLGVVDPIHRPKFIERSLAYWRSALASAEQAHLLVPDFEADVLVYTLMAHFMGVLEFWIHDDIDGSGFKARVIHDTVLLLLPLADDA 196
            +S R R +  RR RI++AA  LIR+T  T  SMRALAE A VS ATPYNLF SK+ ++  +L   L        A    DPL R+ +  A AA  +  DP F R L+  L G   P  R  F     A W   + +A+ A  L  + +AD+L   L   F   L  WI  +ID +  +AR+      +L   ADDA
Sbjct:    5 ISQRERGMAERRARIVEAARDLIRATGDTGLSMRALAERAGVSLATPYNLFGSKQAVMLGVLEADLAAFRAGLDAAGPGDPLRRLFDNVALAARFYDEDPGFYRALFTALAGAGGPELRLLFGPPRHALWVEMIQAAQAAGQLRGEVDADLLARALEGVFGAALPGWIAGEIDAATLEARIGFGFAAVLGGAADDA 200          
BLAST of mRNA_P-wetherbeei_contig18683.2.1 vs. uniprot
Match: A0A059FBE0_9PROT (TetR family transcriptional regulator n=1 Tax=Hyphomonas johnsonii MHS-2 TaxID=1280950 RepID=A0A059FBE0_9PROT)

HSP 1 Score: 100 bits (248), Expect = 1.840e-22
Identity = 66/168 (39.29%), Postives = 91/168 (54.17%), Query Frame = 0
Query:    4 RARQVDARRHRILDAAALLIRSTRGTDFSMRALAEAAEVSPATPYNLFTSKEGLLYALLSRSLDEITLRGLAFQSNDPLERVLEAAAQAADIFLHDPDFMRPLYQFLLGVVDP----IHRPKFIERSLAYWRSALASAEQAHLLVPDFEADVLVYTLMAHFMGVLEFW 167
            R R    RR RI+ AA  LIR T  TD SMR +A+ A+VS ATPYNLF SK  ++ A+     D    R    ++++ LER+ +A A A   F  DPDF RPL++ LL V       +  P+ +ER+   W + ++ A+Q  LL P + AD L   L     GV+  W
Sbjct:    9 RERAKAERRSRIVRAARDLIRETGDTDLSMRMIAKRADVSLATPYNLFGSKHAVVLAVFEDERD-FAERFSKLKADNALERLFDAHALATSYFTEDPDFYRPLWKALLDVQGAKDTGLATPERLERNSQAWEALISDAQQEGLLAPAYPADTLERMLSLFANGVMLSW 175          
BLAST of mRNA_P-wetherbeei_contig18683.2.1 vs. uniprot
Match: A0A062U9Z1_9PROT (HTH tetR-type domain-containing protein n=2 Tax=Hyphomonas chukchiensis TaxID=1280947 RepID=A0A062U9Z1_9PROT)

HSP 1 Score: 92.0 bits (227), Expect = 3.400e-19
Identity = 59/162 (36.42%), Postives = 90/162 (55.56%), Query Frame = 0
Query:   11 RRHRILDAAALLIRSTRGTDFSMRALAEAAEVSPATPYNLFTSKEGLLYALLSRSLDEITLRGLAFQSNDPLERVLEAAAQAADIFLHDPDFMRPLYQFLLGVVDP----IHRPKFIERSLAYWRSALASAEQAHLLVPDFEADVLVYTLMAHFMGVLEFWI 168
            RR RI+ AA  LIR T  T+ SMR +A+ A+VS ATPYNLF SK  ++ A+     D   +R    ++ + LER+ EA A A+  F  DPDF + +++ LL    P    +  P+ +ER+ A WR+ + +A+   L+   F +  L  +L     GV+  W+
Sbjct:   19 RRSRIVQAARDLIRETGDTNLSMRMIAKRADVSLATPYNLFGSKRAVVLAVFEDERD-FAVRFSKIKAANALERLFEAQALASSYFTDDPDFYQTIWKALLDTRSPNDTGLATPERLERNSAAWRALIEAAQTEGLIKASFASAALERSLSYFANGVMLSWV 179          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18683.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
T0HU73_9SPHN2.120e-6050.52HTH tetR-type domain-containing protein n=2 Tax=Sp... [more]
UPI001673F2C85.390e-5146.53TetR/AcrR family transcriptional regulator n=1 Tax... [more]
A0A4R7P6Z3_9GAMM2.840e-4845.93TetR family transcriptional regulator n=1 Tax=Pana... [more]
A0A653IW91_9SPHN3.200e-4138.89TetR family transcriptional regulator n=1 Tax=Novo... [more]
UPI001E4B58F21.570e-3438.95TetR/AcrR family transcriptional regulator n=1 Tax... [more]
A0A328XMU4_9BURK1.330e-3340.96TetR family transcriptional regulator n=3 Tax=Para... [more]
UPI001376D01F2.450e-2433.53hypothetical protein n=1 Tax=Polycyclovorans algic... [more]
UPI001FA7566E3.280e-2438.27TetR/AcrR family transcriptional regulator n=1 Tax... [more]
A0A059FBE0_9PROT1.840e-2239.29TetR family transcriptional regulator n=1 Tax=Hyph... [more]
A0A062U9Z1_9PROT3.400e-1936.42HTH tetR-type domain-containing protein n=2 Tax=Hy... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 198..212
NoneNo IPR availableGENE3D1.10.357.10Tetracycline Repressor, domain 2coord: 2..202
e-value: 8.5E-22
score: 80.5
IPR001647DNA-binding HTH domain, TetR-typePFAMPF00440TetR_Ncoord: 15..60
e-value: 2.2E-7
score: 30.5
IPR001647DNA-binding HTH domain, TetR-typePROSITEPS50977HTH_TETR_2coord: 9..69
score: 17.676043
IPR036271Tetracyclin repressor-like, C-terminal domain superfamilySUPERFAMILY48498Tetracyclin repressor-like, C-terminal domaincoord: 79..170
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 2..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18683contigP-wetherbeei_contig18683:671..1306 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18683.2.1mRNA_P-wetherbeei_contig18683.2.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig18683 671..1309 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig18683.2.1 ID=prot_P-wetherbeei_contig18683.2.1|Name=mRNA_P-wetherbeei_contig18683.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=212bp
MSLRARQVDARRHRILDAAALLIRSTRGTDFSMRALAEAAEVSPATPYNL
FTSKEGLLYALLSRSLDEITLRGLAFQSNDPLERVLEAAAQAADIFLHDP
DFMRPLYQFLLGVVDPIHRPKFIERSLAYWRSALASAEQAHLLVPDFEAD
VLVYTLMAHFMGVLEFWIHDDIDGSGFKARVIHDTVLLLLPLADDARRPR
LLRRLREARRAL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001647HTH_TetR
IPR036271Tet_transcr_reg_TetR-rel_C_sf
IPR009057Homeobox-like_sf