mRNA_P-wetherbeei_contig1866.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1866.2.1
Unique NamemRNA_P-wetherbeei_contig1866.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1866.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1866contigP-wetherbeei_contig1866:4701..6447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1406
Hectar predicted targeting categoryother localisation
Exons2
Cds size711
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186151.8030403-UTR-P-wetherbeei_contig1866:4700..48631683186151.8030403-UTR-P-wetherbeei_contig1866:4700..4863Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1866 4701..4863 -
1683186151.8197317-UTR-P-wetherbeei_contig1866:5574..56031683186151.8197317-UTR-P-wetherbeei_contig1866:5574..5603Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1866 5575..5603 -
1683186151.82712-UTR-P-wetherbeei_contig1866:5944..64471683186151.82712-UTR-P-wetherbeei_contig1866:5944..6447Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1866 5945..6447 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186151.8119721-CDS-P-wetherbeei_contig1866:4863..55741683186151.8119721-CDS-P-wetherbeei_contig1866:4863..5574Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1866 4864..5574 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1866.2.1prot_P-wetherbeei_contig1866.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1866 4864..5574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1866.2.1

>prot_P-wetherbeei_contig1866.2.1 ID=prot_P-wetherbeei_contig1866.2.1|Name=mRNA_P-wetherbeei_contig1866.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=237bp
MGVQVFTKPLVEATYQLESDVPLSLFAFETIDRVAIDIKERFPTLEYPEL
QTTVADLCASDPEYRKALLDDVKSVLIPAKDYFHVKIIVELTPQLNLFEV
AALTNLQYMQRTDPFVADVEATLWMLVQRASAIVDADGVAKLVAELTTYR
QRVSNVRWKADITGTCYTTKAAEVRLFEQRERLMQPSWHGFMSVVAIIAS
SYVSVDRAFSIFKLVFGDQQTRSLQGLSETFSDAAL*
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mRNA from alignment at P-wetherbeei_contig1866:4701..6447-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1866.2.1 ID=mRNA_P-wetherbeei_contig1866.2.1|Name=mRNA_P-wetherbeei_contig1866.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1747bp|location=Sequence derived from alignment at P-wetherbeei_contig1866:4701..6447- (Phaeothamnion wetherbeei SAG_119_79)
GGCTTCATGGAGCCGTGCGGCGGGCCTAAGCCCGACGGAACTGATCGCGG
TGACAACCTGGTGGGCAGCCATCACGCATGTGACAAATGTGGGTGCCCAA
TGCATGCGTTTTGTGGCCTTGACGTTCTCGATGCCGATGGCGATGTCGTG
GAGGACTTCAGGGCGCCACGTCGCTGCGGCGTGTGCAATGCTACTGCCCC
GACGCGTGCACCGGCCGTCGAGGACATGACCGGCGGTTCGGAAAACGAGG
AAGAGGTCTCTTCTATGCTCCTCACGTCGAATACGATGACGTCGTTGCCT
TCATAAGCGACCGCTGCGCTACCAACCTTGCTGCCATTGGGGCTCTGAAA
CCCTTCTTCAGAAGCGCCATGATGATCGGGTGTGAGTCGCACATGTTCGA
CAACTGCGGCAAGAAGATCGTGAATGCCAAGATTGTGGACCTGGCTGACT
TCGTGGGGCTTGTGGGCCACAGCCTCAAGATGAGGGAATACCTCAAGGTA
GAGGTCGGTTCCGCGCCACCGACGTACTGCCAAACGCGGTGTTGAGTGCT
TTTTATGTTTCGCGGCCGACCTTTTCTATTTAGCATCTGGCTGATTGCCC
AAGCGTCCTTCGTTTCGCTTTTACTGCTCTAATTTTTTCCGTTTAATTTT
TGCCTACTTTTCCCTTTGCCACCCTTGCTACTTTTCTATTTGCTGTGCGA
TGCTGCCTTGCGCGTACATCTATCAAGAGTGCGTCCCCCATTGCATCCAC
TGCTATTTTTCTCTCTTCTCTCTCCCTTTTTGTTTGATTCACTTTTTTCC
TTCCTTTCTTATGTCCTCTTCTTCTTTTGCCGCCTTCCTTTAAGGTGGTC
GAGGCGGGAGCTGCGTTCAGGGCATGGGCGTCCAGGTGTTCACAAAACCG
CTCGTAGAGGCCACGTACCAGCTGGAATCGGATGTGCCGCTGTCGCTCTT
TGCTTTCGAAACAATCGACCGTGTCGCCATCGACATCAAGGAGCGCTTCC
CGACGCTGGAGTACCCGGAGCTCCAAACGACAGTGGCTGACCTCTGTGCC
AGCGACCCGGAGTACCGCAAGGCCCTGCTGGACGATGTTAAGAGCGTCTT
GATACCCGCCAAGGACTACTTTCACGTCAAGATCATCGTAGAGCTCACGC
CCCAGCTGAATTTGTTCGAGGTCGCTGCGCTCACAAACCTGCAGTACATG
CAGCGGACGGATCCATTTGTGGCCGACGTGGAGGCCACGCTTTGGATGCT
TGTGCAGCGCGCAAGCGCCATCGTGGACGCTGACGGCGTGGCCAAGCTCG
TGGCAGAGTTGACGACATACAGGCAGCGGGTCAGCAACGTCAGGTGGAAG
GCGGACATCACCGGAACATGCTACACGACAAAGGCAGCGGAGGTGCGGCT
GTTTGAGCAGCGAGAGCGATTGATGCAGCCATCATGGCACGGCTTCATGT
CTGTCGTGGCGATTATTGCGTCGTCGTATGTGTCTGTGGACAGGGCATTT
TCGATTTTTAAGCTTGTTTTCGGGGATCAGCAGACAAGGTCGCTGCAGGG
ACTTTCCGAAACTTTCTCCGATGCTGCGCTTTAACCGGCTATGCGATTGT
GAGAAAAACGAGGATAAAGGCATTTTGGTTGGGCTGTGCACTTGGGGTTT
GCATGGTGAAGAATCTTAGTTACCAGCGAACCAGCCCCTTCCCGGTGCCC
GATGCCGGCCGGCTCTGTCGTAATAGAAGGAAGTTCGTTCCACCAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1866:4701..6447-

>mRNA_P-wetherbeei_contig1866.2.1 ID=mRNA_P-wetherbeei_contig1866.2.1|Name=mRNA_P-wetherbeei_contig1866.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=711bp|location=Sequence derived from alignment at P-wetherbeei_contig1866:4701..6447- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCGTCCAGGTGTTCACAAAACCGCTCGTAGAGGCCACGTACCAGCT
GGAATCGGATGTGCCGCTGTCGCTCTTTGCTTTCGAAACAATCGACCGTG
TCGCCATCGACATCAAGGAGCGCTTCCCGACGCTGGAGTACCCGGAGCTC
CAAACGACAGTGGCTGACCTCTGTGCCAGCGACCCGGAGTACCGCAAGGC
CCTGCTGGACGATGTTAAGAGCGTCTTGATACCCGCCAAGGACTACTTTC
ACGTCAAGATCATCGTAGAGCTCACGCCCCAGCTGAATTTGTTCGAGGTC
GCTGCGCTCACAAACCTGCAGTACATGCAGCGGACGGATCCATTTGTGGC
CGACGTGGAGGCCACGCTTTGGATGCTTGTGCAGCGCGCAAGCGCCATCG
TGGACGCTGACGGCGTGGCCAAGCTCGTGGCAGAGTTGACGACATACAGG
CAGCGGGTCAGCAACGTCAGGTGGAAGGCGGACATCACCGGAACATGCTA
CACGACAAAGGCAGCGGAGGTGCGGCTGTTTGAGCAGCGAGAGCGATTGA
TGCAGCCATCATGGCACGGCTTCATGTCTGTCGTGGCGATTATTGCGTCG
TCGTATGTGTCTGTGGACAGGGCATTTTCGATTTTTAAGCTTGTTTTCGG
GGATCAGCAGACAAGGTCGCTGCAGGGACTTTCCGAAACTTTCTCCGATG
CTGCGCTTTAA
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