mRNA_P-wetherbeei_contig1865.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1865.1.2 vs. uniprot
Match: D8LI76_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI76_ECTSI) HSP 1 Score: 221 bits (563), Expect = 6.150e-59 Identity = 133/297 (44.78%), Postives = 185/297 (62.29%), Query Frame = 1
Query: 259 ALAPSAVRLMGALKTALVKEGFAFGTLQRPPEAVGDEVKLDPQFLRQVETLCRDDMVASLRQAGRSLEAHACEAEERCRNVARLLEPMFELFGVDMPQPQPLRQQTLRGLAL--DVAAAGMGAMTELSAEDAKELAQASFDTEAMRVVAAVVARWCRYVGLCDAEMTSRMQRKNLQVMERIGRAQLHQRLLFQALRDDQEAVLTSHTAASFHRQIHGR--CAIDPNVEGPIFYCGIVCGKRPGYLYLTYWHICLVLRLLPGFLSGGSGGSVVVVPFDEVAAVERGRTFLGEAVVLRR 1137
A+AP+A + +++ AL G +L+ P +V++D QFL QVE +C+ DMVASLR+AG SL+ HA E R V RLLE MF L G+ M P P Q + + D+ + + M +L ED EL+ F +EA RV+A V+AR RY CD +MT+RMQRKN QVM+RI R+QL+QR LFQALRD AV S A+F R + R IDPNVE P+++C I+C +RPGYLYLTYWH+C+V ++ PGF S +V V+ +++ AVE + F+G + +R+
Sbjct: 719 AIAPAAKGFVSSVQRALRDRGALLESLEELP-VQKTKVEIDAQFLSQVEGMCQFDMVASLREAGVSLDEHARNEELRGVVVTRLLEEMFNLVGLPMLPPPP---QLVLAMPRPNDILPSSVDPMPDLCEEDRGELSSHRFCSEASRVMANVLARCIRYTEKCDEQMTARMQRKNRQVMQRISRSQLYQRELFQALRDGHMAVRRSRMTAAFSRVMQSRPEAGIDPNVEAPVYFCSIICNRRPGYLYLTYWHVCVVTKV-PGFAS-----TVTVMNLEDIDAVEIVKLFVGYGIQVRK 1005
BLAST of mRNA_P-wetherbeei_contig1865.1.2 vs. uniprot
Match: A0A836CAL5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAL5_9STRA) HSP 1 Score: 163 bits (413), Expect = 1.360e-39 Identity = 114/331 (34.44%), Postives = 165/331 (49.85%), Query Frame = 1
Query: 268 PSAVRLMGALKTALVKEGF---AFGTLQRPPEAVGD--EVKLDPQFLRQVETLCRDDMVASLRQAGRSLEAHACEAEERCRNVARLLEPMFELFGVDMPQPQPLRQQTLRGLALDVAAAGMGAMTELSAEDAKELAQASFDTEAMRVVAAVVARWCRYVGLCDAEMTSRMQRKNLQVMERIGRAQLHQRLLFQALRDDQEAVLTSHTAASFHRQIHG---RCAIDPNVEGPIFYCGIVCGKRPGYLYLTYWHICLVLRLLPGFLSGGSGGSVVVVPFDEVAAVERGRTFLGEAVVLRRKDWSGADVVFAPTAVRAAELLDLISGLLRLHNE 1236
P A + ++ L+ +G A P A G E LD F+ Q+E CR D+ +L R LE E E R A +L+PMF+L+ MP P ++ R AA A+ LSA + +EL++ F EA RV+A V+ARW YVG CD EM+ + N Q ++R+ +++ L QALRD+ + FHR I ++DP+VEGPIF+C ++ G PG +YLTYWH+CLV L G +VV +P V+ VE R + G V + SG F PTA+ A L D+++ ++ E
Sbjct: 432 PVAAVFLDRVRAELLHQGLLNSALAAAPPRPRAGGQAAEPPLDADFVAQLEEACRTDLSTALGAFARQLEEFLEEQERRAERAAAMLKPMFDLYR--MPFPGRAAEELPRPFGKAPVAA---ALRGLSAGEVRELSRHVFKNEADRVLAFVLARWRSYVGQCDEEMSRAVDTLNHQALDRLLELRMYLCELMQALRDEHASAAAECITKPFHRAIVASGIETSVDPDVEGPIFFCSVLAGSWPGTMYLTYWHLCLVTSLT------GFRPNVVEIPLRHVSQVEAHRMWWGRGYVELQLR-SGESHSFTPTALSATRLRDMLACVIDARRE 750
BLAST of mRNA_P-wetherbeei_contig1865.1.2 vs. uniprot
Match: W7TN29_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TN29_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 2.930e-18 Identity = 80/244 (32.79%), Postives = 120/244 (49.18%), Query Frame = 1
Query: 361 GDEVKLDPQFLRQVETLCRDDMVASLRQAGRSLEAHACEAEERCRNVARLLEPMFELFGVDMP----QPQPLRQQTLRGLALDVAAAGMGAMTE------------LSAEDAKELAQASFDT----EAMRVVAAVVARWCRYVGLCDAEMTSRMQRKNLQVMERIGRAQLHQRLLFQALRDD--QEAVLTSHTAASFHRQI--HGRCAIDPNVEGPIFYCGIVCGKRPGYLYLTYWHICLVLRL 1020
G++ KLD +LRQ+E + R++M +L + LE + E E++C + L PMF L+ + P +P PL L LA A A +E + AE+ + S D +A+R A W V CDAEMT+ MQRKNLQ+++R+GR +Q L + LRD+ + V H +F QI G D VE P++YC + G RP L++T+ I V ++
Sbjct: 139 GEDPKLDRFYLRQLEDMAREEMHKALDGTIQQLEDYVLEKEKQCLQLKEFLMPMFTLYKLAEPPGLNEPLPLSYYPLNLLA----ACNQSARSEEESFADKSDHENVWAENQRPHRSGSLDKVTYMDALRDRA-----WRHNVMQCDAEMTACMQRKNLQIVDRMGRCNEYQLFLLETLRDNPFRTTVPLFH---NFKYQIGHDGGVFEDEEVETPLYYCRCIVGSRPATLFITFTQITFVSKV 370
BLAST of mRNA_P-wetherbeei_contig1865.1.2 vs. uniprot
Match: A0A7S1V5K9_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V5K9_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 3.840e-11 Identity = 71/267 (26.59%), Postives = 123/267 (46.07%), Query Frame = 1
Query: 376 LDPQFLRQVETLCRDDMVASLRQAGRSLEAHACEAEERCRNVARLLEPMFELFGV---DMPQPQPLRQQTLRGLALDVAAAGMG-----AMTELSAEDAKELAQASFDTEAMRVVAAVVARWCRYVGLC--------DAEMTSRMQRKNLQVMERIGRAQLHQRLLFQAL-RDDQEAVLTSHTAASFHRQIHGRCAIDPNV----EGPIFYCGIVCGKRP-GYLYLTYWH-ICLVLRLLPGFLSGGSGGSVVVVPFDEVAAVERGRT 1107
LD + Q+ +CR++M+ SL ++ LE +A +AE C ++ ++L+ FEL+ + +PQP PL L + G A+ +++A ++ + T + + R R V + D E ++R+QRKN+QVM+R+ + Q H+R+ + L R ++ A H QI PN+ + P+F C ++ G G Y+T IC + LP L GS +V+ + D V +T
Sbjct: 96 LDVHYCSQLRRVCRENMILSLLKSASELEEYARDAEYACAHLVQVLKATFELYSIKPPSLPQPLPLTAYPLDFVPHQSTCPPWGRLVMEALQKVAAMNSINSTGKNKGTNDGTKPMSSLDRCERAVQMVLDAFQIQDDEEQSARLQRKNIQVMDRLAKMQAHKRISIETLQRCYPKSTKAQQAAHDLHEQIERSSTNAPNLSVEEQVPLFKCSVLVGSSSTGTFYVTARQLICTTAQFLP--LLMGSKVNVINLEDDLEFVVMESKT 360
BLAST of mRNA_P-wetherbeei_contig1865.1.2 vs. uniprot
Match: A0A7S2PHX0_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PHX0_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 1.580e-7 Identity = 72/281 (25.62%), Postives = 116/281 (41.28%), Query Frame = 1
Query: 376 LDPQFLRQVETLCRDDMVASLRQAGRSLEAHACEAEERCRNVARLLEPMFELFGVD---MPQPQPLRQQTLRGLALDVAAAGMGA-MTE-------------LSAEDAKELAQASFDTEAMRVVAAVVARWCRYVGLCDAEMTSRMQRKNLQVMERIGRAQLHQRLLFQALRDDQEAVLTSHTAA--------------SFHRQ------IHGRCAIDPNVEG----PIFYCGI-VCGKRPGYLYLTYWHICLVLRLLP--GFLSGGSGGSVVVVPFDEVA 1086
LD F Q+ +CR++MV SL ++ LE +A E C + LL + + ++ P PL L +V G +TE L + + ++F + V + V A + D E +R+QRKN+QVM+R+ + Q H+R LRD S AA SFH +HG P++ P+ C I + G PG LYLT +H+ + + +P + GG+ + ++ E+A
Sbjct: 70 LDAHFCSQLRLICRENMVVSLLKSAAELEEYARAEEHACAVLIYLLSWAYTAYEMNPPVFPHMIPLSAYPLDYRPPEVDCPPWGRKVTEVLNIIAANKHSSYLEGSSSPNVIGSNFKLCHVSVKSVVDA----FQSQIDEEQVARLQRKNVQVMDRLAKVQAHKRQSTLILRDSYGVKFLSTKAADTLYEKIMQCQGTLSFHSNAAHVSGMHGEETEIPHLNQQNIVPLLSCSILISGTTPGTLYLTAYHVIIFTQYIPLLSTIRGGARCHIFMLAEVEIA 346 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1865.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1865.1.2 >prot_P-wetherbeei_contig1865.1.2 ID=prot_P-wetherbeei_contig1865.1.2|Name=mRNA_P-wetherbeei_contig1865.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=391bp MAGEKTVPTLTSGMVSATAPAKEPALLAIPGVTTYPGAAMPPVRRRGRHSback to top mRNA from alignment at P-wetherbeei_contig1865:2050..4728- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1865.1.2 ID=mRNA_P-wetherbeei_contig1865.1.2|Name=mRNA_P-wetherbeei_contig1865.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2679bp|location=Sequence derived from alignment at P-wetherbeei_contig1865:2050..4728- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1865:2050..4728- >mRNA_P-wetherbeei_contig1865.1.2 ID=mRNA_P-wetherbeei_contig1865.1.2|Name=mRNA_P-wetherbeei_contig1865.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1173bp|location=Sequence derived from alignment at P-wetherbeei_contig1865:2050..4728- (Phaeothamnion wetherbeei SAG_119_79)back to top |