mRNA_P-wetherbeei_contig18634.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18634.3.1
Unique NamemRNA_P-wetherbeei_contig18634.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18634.3.1 vs. uniprot
Match: A0A6A5L776_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L776_LUPAL)

HSP 1 Score: 123 bits (308), Expect = 7.300e-34
Identity = 62/75 (82.67%), Postives = 63/75 (84.00%), Query Frame = 3
Query:    3 VFDKQSLPPGLCHPLTLACKRVTLLPKLRVQFAEFLQHSSLKRLGILYQTTSVGFGYGL*GGAISWNHAAARPIR 227
            VFDKQSLPPGLCHP  LA   VTLLPKLRVQFAEFLQHSSLKRLGILY TT VGFGYGL GGAISWN   AR I+
Sbjct:  107 VFDKQSLPPGLCHPKILAYIGVTLLPKLRVQFAEFLQHSSLKRLGILYLTTCVGFGYGLYGGAISWNRFPARSIQ 181          
BLAST of mRNA_P-wetherbeei_contig18634.3.1 vs. uniprot
Match: A0A0H5RFD0_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RFD0_9EUKA)

HSP 1 Score: 97.8 bits (242), Expect = 8.960e-25
Identity = 52/77 (67.53%), Postives = 58/77 (75.32%), Query Frame = 3
Query:    3 VFDKQSLPPGLCHPLTLACKRVTLLPKLRVQFAEFLQHSSLKRLGILYQTTSVGFGYGL*GGAISWNHAAAR--PIR 227
            VF KQSLPPGLC P  +A     LLPK+R QFAEFLQ +SLKRLGILY +T VG GYGL GGAISW++  AR  PIR
Sbjct:   13 VFAKQSLPPGLCPPQKVALMWGLLLPKVRRQFAEFLQDTSLKRLGILYHSTCVGLGYGLYGGAISWDNFTARTNPIR 89          
BLAST of mRNA_P-wetherbeei_contig18634.3.1 vs. uniprot
Match: A0A6A5KV19_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5KV19_LUPAL)

HSP 1 Score: 98.6 bits (244), Expect = 1.260e-22
Identity = 49/56 (87.50%), Postives = 49/56 (87.50%), Query Frame = 3
Query:    3 VFDKQSLPPGLCHPLTLACKRVTLLPKLRVQFAEFLQHSSLKRLGILYQTTSVGFG 170
            VFDKQSLPPGLCHP  LA   VTLLPKLRVQFAEFLQHSSLKRLGILY TT VGFG
Sbjct:  191 VFDKQSLPPGLCHPKILAYIGVTLLPKLRVQFAEFLQHSSLKRLGILYLTTCVGFG 246          
BLAST of mRNA_P-wetherbeei_contig18634.3.1 vs. uniprot
Match: A0A5N6L683_9ROSI (Uncharacterized protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6L683_9ROSI)

HSP 1 Score: 93.6 bits (231), Expect = 3.390e-22
Identity = 49/78 (62.82%), Postives = 55/78 (70.51%), Query Frame = 1
Query:   10 INSRYPLVCATLLHLRAKGSRFFRSYACNLPSSFSIVLSSALVYSTRPPVSVSGTDYKEELFPGTTQQPDQSDKVELH 243
            ++SRYPL CA    LR   + FFR Y  NLPSSF  +LSSALVYSTRPPVSVSGT Y   LFPGT  +P QS+K E H
Sbjct:   94 LSSRYPLACAPCHGLRLGRASFFRRYGGNLPSSFRTLLSSALVYSTRPPVSVSGTVYTVGLFPGTASKPGQSNKAEQH 171          
BLAST of mRNA_P-wetherbeei_contig18634.3.1 vs. uniprot
Match: Q3BKI0_9PROT (Uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense TaxID=55518 RepID=Q3BKI0_9PROT)

HSP 1 Score: 90.9 bits (224), Expect = 1.700e-21
Identity = 49/77 (63.64%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    1 VFLINSRYPLVCATLLHLRAKGSRFFRSYACNLPSSFSIVLSSALVYSTRPPVSVSGTDYKEELFPGTTQQPDQSDK 231
            +FL+NSR+PLVCAT  +LR       RSY  NLPSSF+ +LSSALVYST PPVSVSGT Y  ELFPG +    QSDK
Sbjct:    1 MFLVNSRHPLVCATYHYLRNGRYPLSRSYGVNLPSSFNTILSSALVYSTSPPVSVSGTVYTLELFPGPSSLHPQSDK 77          
BLAST of mRNA_P-wetherbeei_contig18634.3.1 vs. uniprot
Match: E2CDK8_9HYPH (Uncharacterized protein n=1 Tax=Roseibium sp. TrichSKD4 TaxID=744980 RepID=E2CDK8_9HYPH)

HSP 1 Score: 85.9 bits (211), Expect = 1.380e-20
Identity = 44/59 (74.58%), Postives = 48/59 (81.36%), Query Frame = 3
Query:   51 LACKRVTLLPKLRVQFAEFLQHSSLKRLGILYQTTSVGFGYGL*GGAISWNHAAARPIR 227
            +A K V+LL  LR  FAEFLQHSSLKRLGILYQ+T VGFGYGL GGAISWN  AA PI+
Sbjct:    2 VAHKEVSLLANLREHFAEFLQHSSLKRLGILYQSTCVGFGYGLYGGAISWNTFAAPPIQ 60          
BLAST of mRNA_P-wetherbeei_contig18634.3.1 vs. uniprot
Match: A0A6A5L5E7_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L5E7_LUPAL)

HSP 1 Score: 87.8 bits (216), Expect = 1.870e-18
Identity = 44/59 (74.58%), Postives = 46/59 (77.97%), Query Frame = 3
Query:    3 VFDKQSLPPGLCHPLTLACKRVTLLPKLRVQFAEFLQHSSLKRLGILYQTTSVGFGYGL 179
            V DKQS PPGLC    LA  R  L+PKLR Q AEFLQHSSLKRLGILYQ+T VGFGYGL
Sbjct:  284 VLDKQSPPPGLCPSARLASNRGLLIPKLRRQIAEFLQHSSLKRLGILYQSTCVGFGYGL 342          
BLAST of mRNA_P-wetherbeei_contig18634.3.1 vs. uniprot
Match: A0A6A5L269_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L269_LUPAL)

HSP 1 Score: 87.8 bits (216), Expect = 1.900e-18
Identity = 44/59 (74.58%), Postives = 46/59 (77.97%), Query Frame = 3
Query:    3 VFDKQSLPPGLCHPLTLACKRVTLLPKLRVQFAEFLQHSSLKRLGILYQTTSVGFGYGL 179
            V DKQS PPGLC    LA  R  L+PKLR Q AEFLQHSSLKRLGILYQ+T VGFGYGL
Sbjct:  335 VLDKQSPPPGLCPSARLASNRGLLIPKLRRQIAEFLQHSSLKRLGILYQSTCVGFGYGL 393          
BLAST of mRNA_P-wetherbeei_contig18634.3.1 vs. uniprot
Match: A0A6A5L1U4_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L1U4_LUPAL)

HSP 1 Score: 87.8 bits (216), Expect = 1.920e-18
Identity = 44/59 (74.58%), Postives = 46/59 (77.97%), Query Frame = 3
Query:    3 VFDKQSLPPGLCHPLTLACKRVTLLPKLRVQFAEFLQHSSLKRLGILYQTTSVGFGYGL 179
            V DKQS PPGLC    LA  R  L+PKLR Q AEFLQHSSLKRLGILYQ+T VGFGYGL
Sbjct:  293 VLDKQSPPPGLCPSARLASNRGLLIPKLRRQIAEFLQHSSLKRLGILYQSTCVGFGYGL 351          
BLAST of mRNA_P-wetherbeei_contig18634.3.1 vs. uniprot
Match: A0A2A3MP34_9SPHN (Uncharacterized protein n=1 Tax=Sphingobium sp. D43FB TaxID=2017595 RepID=A0A2A3MP34_9SPHN)

HSP 1 Score: 73.9 bits (180), Expect = 1.020e-15
Identity = 34/45 (75.56%), Postives = 35/45 (77.78%), Query Frame = 2
Query:   65 GHASSEVTRAICRVPSA*FSQAPWYTLPDHQCRFRVRTIRRSYFL 199
            G  SSE T AICRVPS  FSQ PWYTLP H CRFRVR+IRR YFL
Sbjct:    2 GPPSSEGTEAICRVPSGYFSQTPWYTLPFHLCRFRVRSIRRGYFL 46          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18634.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A5L776_LUPAL7.300e-3482.67Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A0H5RFD0_9EUKA8.960e-2567.53Uncharacterized protein (Fragment) n=1 Tax=Spongos... [more]
A0A6A5KV19_LUPAL1.260e-2287.50Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A5N6L683_9ROSI3.390e-2262.82Uncharacterized protein n=1 Tax=Carpinus fangiana ... [more]
Q3BKI0_9PROT1.700e-2163.64Uncharacterized protein n=1 Tax=Magnetospirillum g... [more]
E2CDK8_9HYPH1.380e-2074.58Uncharacterized protein n=1 Tax=Roseibium sp. Tric... [more]
A0A6A5L5E7_LUPAL1.870e-1874.58Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L269_LUPAL1.900e-1874.58Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L1U4_LUPAL1.920e-1874.58Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A2A3MP34_9SPHN1.020e-1575.56Uncharacterized protein n=1 Tax=Sphingobium sp. D4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18634contigP-wetherbeei_contig18634:1057..1302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1250232.JQNJ01000001_gene2467
Model size246
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categorymitochondrion
Exons1
Evalue0.000329
EggNOG OGs2AH1X@1|root,317B1@2|Bacteria,4P85G@976|Bacteroidetes,1IB1V@117743|Flavobacteriia
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186151.3116708-CDS-P-wetherbeei_contig18634:1056..13021683186151.3116708-CDS-P-wetherbeei_contig18634:1056..1302Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18634 1057..1302 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18634.3.1prot_P-wetherbeei_contig18634.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18634 1057..1302 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18634.3.1

>prot_P-wetherbeei_contig18634.3.1 ID=prot_P-wetherbeei_contig18634.3.1|Name=mRNA_P-wetherbeei_contig18634.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=82bp
VFLINSRYPLVCATLLHLRAKGSRFFRSYACNLPSSFSIVLSSALVYSTR
PPVSVSGTDYKEELFPGTTQQPDQSDKVELH*
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mRNA from alignment at P-wetherbeei_contig18634:1057..1302-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18634.3.1 ID=mRNA_P-wetherbeei_contig18634.3.1|Name=mRNA_P-wetherbeei_contig18634.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig18634:1057..1302- (Phaeothamnion wetherbeei SAG_119_79)
GTGTTTTTGATAAACAGTCGCTACCCCCTGGTCTGTGCCACCCTCTTACA CTTGCGTGCAAAAGGGTCACGCTTCTTCCGAAGTTACGCGTGCAATTTGC CGAGTTCCTTCAGCATAGTTCTCTCAAGCGCCTTGGTATACTCTACCAGA CCACCAGTGTCGGTTTCGGGTACGGACTATAAGGAGGAGCTATTTCCTGG AACCACGCAGCAGCCCGACCAATCCGATAAGGTCGAACTACATTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18634:1057..1302-

>mRNA_P-wetherbeei_contig18634.3.1 ID=mRNA_P-wetherbeei_contig18634.3.1|Name=mRNA_P-wetherbeei_contig18634.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig18634:1057..1302- (Phaeothamnion wetherbeei SAG_119_79)
GTGTTTTTGATAAACAGTCGCTACCCCCTGGTCTGTGCCACCCTCTTACA
CTTGCGTGCAAAAGGGTCACGCTTCTTCCGAAGTTACGCGTGCAATTTGC
CGAGTTCCTTCAGCATAGTTCTCTCAAGCGCCTTGGTATACTCTACCAGA
CCACCAGTGTCGGTTTCGGGTACGGACTATAAGGAGGAGCTATTTCCTGG
AACCACGCAGCAGCCCGACCAATCCGATAAGGTCGAACTACATTGA
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