mRNA_P-wetherbeei_contig18616.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18616.1.1
Unique NamemRNA_P-wetherbeei_contig18616.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18616.1.1 vs. uniprot
Match: D7G5L8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L8_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 2.690e-33
Identity = 62/91 (68.13%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:    1 QMAAVDAGESKVMATLKAANNLLVDLDAMETYVAPCFPPAYNVAQVFKEAYTGFLMSLLLPMVRSEDRMAEHDVRDILEAIKWLQYYNQKV 273
            QMA VDAGESKV ATL AA NLLVDL+A+++ V PCFPP Y++ +VF+++Y GFL  LLLP+V  ED+MA+ DVRDILEAIKWL+YYN KV
Sbjct:  266 QMAGVDAGESKVFATLGAATNLLVDLEAVDSEVVPCFPPEYDILRVFRDSYEGFLKDLLLPLVCGEDKMADCDVRDILEAIKWLEYYNTKV 356
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BLAST of mRNA_P-wetherbeei_contig18616.1.1 vs. uniprot
Match: A0A6H5KMB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMB3_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 4.680e-32
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:    1 QMAAVDAGESKVMATLKAANNLLVDLDAMETYVAPCFPPAYNVAQVFKEAYTGFLMSLLLPMVRSEDRMAEHDVRDILEAIKWLQYYNQKV 273
            QMA VDAGESKV ATL AA NLLVDL+A+E+ V PCFP  Y++ +VF+++Y GFL  LLLP+V  ED+MA+ DVRDILEAIKWL+YYN KV
Sbjct:  103 QMAGVDAGESKVFATLGAATNLLVDLEAVESEVVPCFPREYDILRVFRDSYEGFLKDLLLPLVCGEDKMADCDVRDILEAIKWLEYYNTKV 193
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BLAST of mRNA_P-wetherbeei_contig18616.1.1 vs. uniprot
Match: A0A835YNU2_9STRA (Exocyst complex component Sec6-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNU2_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.370e-27
Identity = 54/91 (59.34%), Postives = 72/91 (79.12%), Query Frame = 1 
Query:    1 QMAAVDAGESKVMATLKAANNLLVDLDAMETYVAPCFPPAYNVAQVFKEAYTGFLMSLLLPMVRSEDRMAEHDVRDILEAIKWLQYYNQKV 273
            QMA+VDAG+S++MATL AA NLLVDL+++   V PCFPP Y + +VF+ AY GFL  LL P+V S++R+  +DV+D+LEAIKWL+YY  KV
Sbjct:  284 QMASVDAGDSQMMATLGAATNLLVDLESVSELVVPCFPPHYEILKVFRTAYEGFLNDLLYPLVSSQERIDTYDVKDMLEAIKWLEYYVSKV 374
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18616.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G5L8_ECTSI2.690e-3368.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMB3_9PHAE4.680e-3268.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YNU2_9STRA1.370e-2759.34Exocyst complex component Sec6-domain-containing p... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18616contigP-wetherbeei_contig18616:50..645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G5L8
Preferred nameExoc3l2
PFAMsSec6
Model size273
Max annot lvl2759|Eukaryota
KEGG koko:K06110,ko:K19988
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.2e-33
EggNOG OGsCOG5173@1|root,KOG2286@2759|Eukaryota
Ec32 ortholog descriptionExocyst complex component Sec6
Ec32 orthologEc-00_008950.1
Descriptionexocyst localization
Cds size270
COG categoryU
BRITEko00000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186150.822702-UTR-P-wetherbeei_contig18616:49..521683186150.822702-UTR-P-wetherbeei_contig18616:49..52Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18616 50..52 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186150.8334124-CDS-P-wetherbeei_contig18616:52..1841683186150.8334124-CDS-P-wetherbeei_contig18616:52..184Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18616 53..184 +
1683186150.842076-CDS-P-wetherbeei_contig18616:507..6451683186150.842076-CDS-P-wetherbeei_contig18616:507..645Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18616 508..645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18616.1.1prot_P-wetherbeei_contig18616.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18616 53..645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18616.1.1

>prot_P-wetherbeei_contig18616.1.1 ID=prot_P-wetherbeei_contig18616.1.1|Name=mRNA_P-wetherbeei_contig18616.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp
MAAVDAGESKVMATLKAANNLLVDLDAMETYVAPCFPPAYNVAQVFKEAY
TGFLMSLLLPMVRSEDRMAEHDVRDILEAIKWLQYYNQKV
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mRNA from alignment at P-wetherbeei_contig18616:50..645+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18616.1.1 ID=mRNA_P-wetherbeei_contig18616.1.1|Name=mRNA_P-wetherbeei_contig18616.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=596bp|location=Sequence derived from alignment at P-wetherbeei_contig18616:50..645+ (Phaeothamnion wetherbeei SAG_119_79)
CAGATGGCGGCGGTGGACGCCGGGGAGAGCAAGGTGATGGCGACGCTCAA
GGCGGCGAACAACTTGCTGGTGGACCTCGACGCCATGGAGACGTACGTCG
CACCCTGCTTCCCACCCGCCTATAATGTCGCACAGGTCAGTCAGTCTTTC
TGCTGTCGGTTCGGTTCATCCGCTTCGTCGGTTCGACGTATTGGTTCGGT
AGATGCAGTAGTTAGCCTGGCGGTTTGTCCGAGCGGTATCTTGAAGTGGA
TTGGTGATGACGGCGGAAGTCAGTCTGGCGTGCTGTTTGCTGTGCCGGCC
TCCATCGGTCTATGCTGCCGCGCCACCAAATTTAGACAATAATTGTTGCC
TCTCTTCTTGCTCCAGCCACGCGGGCCCCTTTTGGCTCCCTCCTGTATTT
GCTGATCGACAACACGACCACAGATGATAACCCCAAAATGCCGAATAACT
CTAAGCAGGTGTTCAAGGAGGCGTACACGGGGTTCCTGATGTCGCTGCTG
CTGCCGATGGTGCGCTCGGAGGACCGCATGGCCGAGCACGATGTGCGTGA
CATCCTCGAGGCCATCAAATGGCTCCAGTACTACAACCAAAAGGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18616:50..645+

>mRNA_P-wetherbeei_contig18616.1.1 ID=mRNA_P-wetherbeei_contig18616.1.1|Name=mRNA_P-wetherbeei_contig18616.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig18616:50..645+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCGGTGGACGCCGGGGAGAGCAAGGTGATGGCGACGCTCAAGGC
GGCGAACAACTTGCTGGTGGACCTCGACGCCATGGAGACGTACGTCGCAC
CCTGCTTCCCACCCGCCTATAATGTCGCACAGGTGTTCAAGGAGGCGTAC
ACGGGGTTCCTGATGTCGCTGCTGCTGCCGATGGTGCGCTCGGAGGACCG
CATGGCCGAGCACGATGTGCGTGACATCCTCGAGGCCATCAAATGGCTCC
AGTACTACAACCAAAAGGTC
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