mRNA_P-wetherbeei_contig186.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig186.3.1 vs. uniprot
Match: A0A835Z9B6_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9B6_9STRA) HSP 1 Score: 268 bits (684), Expect = 4.300e-90 Identity = 132/153 (86.27%), Postives = 145/153 (94.77%), Query Frame = 1
Query: 1 MIKFVLMVNKMGQTRISSYYEWMPIPERVALEAEVVRRCFARSELQCSFFEFRGYKIIYRRYASLFFIVGVDS-DEENELGILEFIHNLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGFVVEGNKDNVLRPVQLMDKVVSTEESIFGS 456
MIKFVLMVNKMGQTR+SSYYEW+PIPERVALEAEVVRRCF+RSELQCSFFEFRGYKIIYRRYASLFFIVGVDS DEENELG+LEFIH LVETLDKYFQSVCELDIMFNLEKTHFILDEMV+NG V E N+DN+L+P+QLMDKV + +++ FGS
Sbjct: 1 MIKFVLMVNKMGQTRVSSYYEWLPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVDSSDEENELGMLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVMNGCVCEANRDNILKPLQLMDKVSANDDAGFGS 153
BLAST of mRNA_P-wetherbeei_contig186.3.1 vs. uniprot
Match: D8LPP6_ECTSI (AP complex subunit sigma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP6_ECTSI) HSP 1 Score: 266 bits (679), Expect = 2.570e-89 Identity = 131/157 (83.44%), Postives = 144/157 (91.72%), Query Frame = 1
Query: 1 MIKFVLMVNKMGQTRISSYYEWMPIPERVALEAEVVRRCFARSELQCSFFEFRGYKIIYRRYASLFFIVGV--DSDEENELGILEFIHNLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGFVVEGNKDNVLRPVQLMDKVVSTEESIFGSGKS 465
MIKFVLMVNKMGQTR+SSYY+WMPIPERVALEAEVVRRCF+RSELQCSFFEFRGYKIIYRRYASLFFIVGV DSD+ENELG+LEFIH LVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNG++ EGN++NVL+P+ LMD +S+FGS S
Sbjct: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSSHAGDSVFGSKSS 157
BLAST of mRNA_P-wetherbeei_contig186.3.1 vs. uniprot
Match: A0A7S2UUI5_9STRA (AP complex subunit sigma n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUI5_9STRA) HSP 1 Score: 244 bits (622), Expect = 1.060e-80 Identity = 109/150 (72.67%), Postives = 138/150 (92.00%), Query Frame = 1
Query: 1 MIKFVLMVNKMGQTRISSYYEWMPIPERVALEAEVVRRCFARSELQCSFFEFRGYKIIYRRYASLFFIVGVDSDEENELGILEFIHNLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGFVVEGNKDNVLRPVQLMDKVVSTEESIF 450
MIKF+LMVNK GQTR+SSY+EWM IPERVALE+E++R+C +R+E QCSF E+RGY++IYRRYASLFFIVGV +DEENELG+LEFIH+LVETLDKYF+SVCELDIMFN+EK HFILDEMV+NG+++E N+ N+L+P+ MDK+ ++E+SIF
Sbjct: 1 MIKFILMVNKQGQTRLSSYFEWMTIPERVALESEIIRKCLSRAEYQCSFLEYRGYRVIYRRYASLFFIVGVGADEENELGVLEFIHSLVETLDKYFESVCELDIMFNMEKAHFILDEMVMNGYIMETNRTNILKPIAQMDKMANSEDSIF 150
BLAST of mRNA_P-wetherbeei_contig186.3.1 vs. uniprot
Match: F0Y567_AURAN (AP complex subunit sigma n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y567_AURAN) HSP 1 Score: 236 bits (602), Expect = 1.180e-77 Identity = 109/149 (73.15%), Postives = 134/149 (89.93%), Query Frame = 1
Query: 4 IKFVLMVNKMGQTRISSYYEWMPIPERVALEAEVVRRCFARSELQCSFFEFRGYKIIYRRYASLFFIVGVDSDEENELGILEFIHNLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGFVVEGNKDNVLRPVQLMDKVVSTEESIF 450
I+F+LMVNK GQTR+S+YYEW+P+PERVALE+E++R+C +RSE QCSF E+RGYK++YRRYASLFFIVG + D ENELGILEFIH LVETLDKYF+SVCELDIMFNLEK HFILDEMV+NG +VE NK NVL+P+ LM+K ++EE++F
Sbjct: 3 IRFILMVNKQGQTRLSTYYEWLPMPERVALESEIIRKCLSRSEFQCSFVEYRGYKVVYRRYASLFFIVGCEQDSENELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFILDEMVMNGCIVETNKANVLKPIALMEK--ASEETLF 149
BLAST of mRNA_P-wetherbeei_contig186.3.1 vs. uniprot
Match: A0A7S3ZZG7_9STRA (AP complex subunit sigma n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZG7_9STRA) HSP 1 Score: 234 bits (597), Expect = 6.590e-77 Identity = 112/149 (75.17%), Postives = 132/149 (88.59%), Query Frame = 1
Query: 4 IKFVLMVNKMGQTRISSYYEWMPIPERVALEAEVVRRCFARSELQCSFFEFRGYKIIYRRYASLFFIVGVDSDEENELGILEFIHNLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGFVVEGNKDNVLRPVQLMDKVVSTEESIF 450
IKFVLMVNK GQTR+S+YYEW+ +PERVALEAE++R C +RSE QCSF E+RGYK++YRRYASLFFIVGVD D ENELGILEFIH LVETLDKYF+SVCELDIMFNLEK HFILDEMV++G VVE NK N+L+P+ LM+K ++EE +F
Sbjct: 3 IKFVLMVNKQGQTRLSTYYEWLSMPERVALEAEIIRTCLSRSEFQCSFVEYRGYKVVYRRYASLFFIVGVDQDGENELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFILDEMVVDGCVVETNKVNILKPIALMEK--ASEEKLF 149
BLAST of mRNA_P-wetherbeei_contig186.3.1 vs. uniprot
Match: A0A7S3GXI4_9STRA (AP complex subunit sigma n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXI4_9STRA) HSP 1 Score: 232 bits (591), Expect = 5.590e-76 Identity = 105/150 (70.00%), Postives = 132/150 (88.00%), Query Frame = 1
Query: 1 MIKFVLMVNKMGQTRISSYYEWMPIPERVALEAEVVRRCFARSELQCSFFEFRGYKIIYRRYASLFFIVGVDSDEENELGILEFIHNLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGFVVEGNKDNVLRPVQLMDKVVSTEESIF 450
MIKFVLMVNK GQTR++SY++W PI ERVALEAE++RRC +R+E QCSF E+RG+K++YRRYASLFF+V VD +EENEL ILEFIH+LVET+DKYF+SVCELDIMF++EK H+I+DEMV+NG +VE NK N+L+P+ LMDK+ S E IF
Sbjct: 1 MIKFVLMVNKQGQTRLASYFQWYPIQERVALEAEIIRRCLSRTEFQCSFIEYRGFKVVYRRYASLFFVVAVDGEEENELAILEFIHSLVETMDKYFESVCELDIMFHIEKAHYIVDEMVVNGSIVENNKVNILKPLALMDKLASAEGGIF 150
BLAST of mRNA_P-wetherbeei_contig186.3.1 vs. uniprot
Match: W7U353_9STRA (AP complex subunit sigma n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U353_9STRA) HSP 1 Score: 230 bits (586), Expect = 5.500e-75 Identity = 110/164 (67.07%), Postives = 133/164 (81.10%), Query Frame = 1
Query: 1 MIKFVLMVNKMGQTRISSYYEWMPIPERVALEAEVVRRCFARSELQCSFFEFRGYKIIYRRYASLFFIVGVDSDE--------------ENELGILEFIHNLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGFVVEGNKDNVLRPVQLMDKVVSTEESIF 450
MI+F+L VNK GQTR+SSYY WM IPERVALEAE++R+C +RSELQC F E+RG+K+IYRRYASLFFIVGV+ D+ ENEL ILEFIH LVETLDKYF+SVCELDIMFNLEK HFI+DEMV+NG +V+ NK N+L+P+ LM+K ++EESIF
Sbjct: 1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVEGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKASASEESIF 164
BLAST of mRNA_P-wetherbeei_contig186.3.1 vs. uniprot
Match: A0A2R5GZ26_9STRA (AP complex subunit sigma n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GZ26_9STRA) HSP 1 Score: 227 bits (579), Expect = 2.880e-74 Identity = 109/142 (76.76%), Postives = 124/142 (87.32%), Query Frame = 1
Query: 1 MIKFVLMVNKMGQTRISSYYEWMPIPERVALEAEVVRRCFARSELQCSFFEFRGYKIIYRRYASLFFIVGVDSDEENELGILEFIHNLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGFVVEGNKDNVLRPVQLMDKV 426
MIKFVLMVNK GQTR+SSYYEW+ I ER ALEAE++R+C AR+E QCSF E RGYK++YRRYASLFFIVGVD DEENELGILEFIH LVETLDKYF +VCELDIMFNLEK HFIL+EMV NG VVE NK NVL+P+ ++D +
Sbjct: 1 MIKFVLMVNKQGQTRLSSYYEWLTIEERGALEAEIIRKCLARTENQCSFMENRGYKVVYRRYASLFFIVGVDQDEENELGILEFIHCLVETLDKYFSNVCELDIMFNLEKAHFILNEMVQNGHVVEANKANVLKPITMLDSI 142
BLAST of mRNA_P-wetherbeei_contig186.3.1 vs. uniprot
Match: A0A7S1C3U2_9STRA (AP complex subunit sigma n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3U2_9STRA) HSP 1 Score: 222 bits (566), Expect = 2.850e-72 Identity = 102/140 (72.86%), Postives = 125/140 (89.29%), Query Frame = 1
Query: 4 IKFVLMVNKMGQTRISSYYEWMPIPERVALEAEVVRRCFARSELQCSFFEFRGYKIIYRRYASLFFIVGVDSDEENELGILEFIHNLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGFVVEGNKDNVLRPVQLMDK 423
IKFVLMVNK GQTR++ Y +W+PI ERVALEAE++R+C +R+ELQCSF E+RGYK++YRRYASL+FIVGV D+ENEL ILEFIH LVETLDKYF++VCELDIMFNLEK HFIL+EM++NG +VE NK NVLRP+ L++K
Sbjct: 3 IKFVLMVNKQGQTRLAEYCDWLPIEERVALEAEIIRKCLSRNELQCSFMEYRGYKVVYRRYASLYFIVGVKGDDENELSILEFIHALVETLDKYFENVCELDIMFNLEKAHFILNEMLMNGCIVETNKANVLRPIHLLEK 142
BLAST of mRNA_P-wetherbeei_contig186.3.1 vs. uniprot
Match: A0A7S2FA09_9STRA (AP complex subunit sigma n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FA09_9STRA) HSP 1 Score: 222 bits (566), Expect = 6.970e-72 Identity = 106/152 (69.74%), Postives = 131/152 (86.18%), Query Frame = 1
Query: 1 MIKFVLMVNKMGQTRISSYYEWMPIPERVALEAEVVRRCFARSELQCSFFEFRGYKIIYRRYASLFFIVGVDSDEENELGILEFIHNLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGFVVEGNKDNVLRPVQLMDKVVSTEESIFGS 456
M+KFVLMVNK GQTR+SSYYEW+P+ ER ALEAE++R+C +R+E QCSF E+RGYK+IYRRYASLFFIVG+ D NELG+LEFIH LVETLDKYF+SVCELDIMFNLEK HFIL+EMV NG + E NK N+L+P+ LM+K ++++S+F S
Sbjct: 20 MLKFVLMVNKQGQTRLSSYYEWIPMQERCALEAEIIRKCLSRNETQCSFVEYRGYKVIYRRYASLFFIVGM-KDNMNELGVLEFIHALVETLDKYFESVCELDIMFNLEKAHFILEEMVQNGCIFETNKANILKPIMLMEK--ASDDSVFSS 168 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig186.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig186.3.1 >prot_P-wetherbeei_contig186.3.1 ID=prot_P-wetherbeei_contig186.3.1|Name=mRNA_P-wetherbeei_contig186.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp MIKFVLMVNKMGQTRISSYYEWMPIPERVALEAEVVRRCFARSELQCSFFback to top mRNA from alignment at P-wetherbeei_contig186:3103..4632+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig186.3.1 ID=mRNA_P-wetherbeei_contig186.3.1|Name=mRNA_P-wetherbeei_contig186.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1530bp|location=Sequence derived from alignment at P-wetherbeei_contig186:3103..4632+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig186:3103..4632+ >mRNA_P-wetherbeei_contig186.3.1 ID=mRNA_P-wetherbeei_contig186.3.1|Name=mRNA_P-wetherbeei_contig186.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig186:3103..4632+ (Phaeothamnion wetherbeei SAG_119_79)back to top |