mRNA_P-wetherbeei_contig1858.1.4 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1858.1.4
Unique NamemRNA_P-wetherbeei_contig1858.1.4
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig1858.1.4 vs. uniprot
Match: D8LR43_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LR43_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 2.710e-11
Identity = 35/72 (48.61%), Postives = 47/72 (65.28%), Query Frame = 1 
Query:   22 LSRAPQEYLNTYDKSVVCVPDCVGL-HCNMFGICQDCRGCYNTCEGAAYYIDTHPGTPGSEITFCPDSGLTD 234
            LS A  E+ + + K+V C  DC GL +CNMFGIC+ CRGC+ TCEGA  +++   G+P   ITFC   G+ D
Sbjct:   38 LSPADIEHNSIFSKTVECDQDCPGLINCNMFGICEQCRGCFETCEGAMLFMEK-TGSPAEYITFCSGIGIAD 108
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1858.1.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LR43_ECTSI2.710e-1148.61Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1858contigP-wetherbeei_contig1858:3..4599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1114
Hectar predicted targeting categoryother localisation
Exons6
Cds size1113
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1858.1.4prot_P-wetherbeei_contig1858.1.4Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1858 3..4599 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186149.8978162-CDS-P-wetherbeei_contig1858:2..5741683186149.8978162-CDS-P-wetherbeei_contig1858:2..574Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1858 3..574 +
1683186149.9081469-CDS-P-wetherbeei_contig1858:765..8731683186149.9081469-CDS-P-wetherbeei_contig1858:765..873Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1858 766..873 +
1683186149.9181013-CDS-P-wetherbeei_contig1858:940..11141683186149.9181013-CDS-P-wetherbeei_contig1858:940..1114Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1858 941..1114 +
1683186149.9278498-CDS-P-wetherbeei_contig1858:1315..14171683186149.9278498-CDS-P-wetherbeei_contig1858:1315..1417Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1858 1316..1417 +
1683186149.9369438-CDS-P-wetherbeei_contig1858:1732..18171683186149.9369438-CDS-P-wetherbeei_contig1858:1732..1817Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1858 1733..1817 +
1683186149.9527376-CDS-P-wetherbeei_contig1858:4527..45991683186149.9527376-CDS-P-wetherbeei_contig1858:4527..4599Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1858 4528..4599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1858.1.4

>prot_P-wetherbeei_contig1858.1.4 ID=prot_P-wetherbeei_contig1858.1.4|Name=mRNA_P-wetherbeei_contig1858.1.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=371bp
TFPVPLFLSRAPQEYLNTYDKSVVCVPDCVGLHCNMFGICQDCRGCYNTC
EGAAYYIDTHPGTPGSEITFCPDSGLTDYDVDCFAAPTPSPTTADETVAP
TAAPTGADECYCAAQISDAGKEWFCTEDFSIYCDASCAEGGLWCDAWGYQ
GCRFCAFSCEGRAEDECVLCPPDAEHFDSYCPPVTTSAPTTAPTPTPTVP
DESTYAPTAAPVYYPTPSPTTFDVTTGGSASLTDPFFPPPPLPLLSAPAP
RSSPTSAPTTAPVYYPHYTPAPTLAPTPALSVVTGAPTAAPTYTMATPSP
TTPDEIVTPAPVPTFAPTVAPTAAPTTGDEYTYAPTAAPTAAPTTADPAA
ASPTAAPSPPPLLWELQRRP*
back to top

mRNA from alignment at P-wetherbeei_contig1858:3..4599+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1858.1.4 ID=mRNA_P-wetherbeei_contig1858.1.4|Name=mRNA_P-wetherbeei_contig1858.1.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4597bp|location=Sequence derived from alignment at P-wetherbeei_contig1858:3..4599+ (Phaeothamnion wetherbeei SAG_119_79)
ACTTTTCCCGTCCCCCTGTTCTTGTCCCGCGCTCCGCAGGAGTACCTGAA
TACGTACGACAAGTCGGTGGTGTGCGTGCCGGACTGCGTAGGGCTTCACT
GCAACATGTTTGGCATTTGCCAGGACTGCCGCGGCTGCTACAACACGTGC
GAGGGCGCGGCATACTACATCGACACGCACCCGGGCACCCCCGGCAGTGA
GATCACCTTCTGCCCGGACAGCGGCCTGACCGACTACGACGTCGACTGCT
TCGCGGCGCCGACGCCGTCGCCGACGACGGCAGATGAAACGGTGGCACCG
ACGGCGGCGCCGACTGGCGCCGACGAGTGCTACTGCGCAGCCCAGATCAG
CGACGCCGGCAAGGAGTGGTTCTGCACCGAGGACTTTAGCATCTACTGCG
ACGCGTCGTGTGCGGAAGGCGGCCTGTGGTGCGACGCCTGGGGCTACCAG
GGGTGCCGCTTCTGTGCATTTTCGTGCGAGGGCCGCGCCGAGGACGAGTG
CGTGCTGTGCCCGCCCGACGCCGAGCACTTCGACTCGTACTGCCCCCCCG
TCACCACCTCGGCGCCCACGACGTAAGCGAGCTTTGATGACTTTCAGAAG
GGTTAAGAAGCCTGTTGAAGTTCAAGGCTCCTTGAAAGGTTGCGCATCCT
CTTCTACTCGTTGGCGTCTTTGCACTTTCCCTGCCGCTCTTCAACTAATC
TTCTCTTCCTTCCCTGCGCCGTTTTCTGCCGCCGCGTCCTCTCTCTTCTC
TTCACTTCTGCAGTGCCCCGACACCGACGCCGACGGTTCCCGACGAGTCC
ACGTACGCGCCCACCGCCGCGCCCGTCTACTACCCGACGCCGTCTCCGAC
CACCTTCGACGTGACCACGGGGTAAGCTTTCAGCCACTAGAGCTTTTTCA
GAATGTTCCAACTCACTTTTGAATCTTCTCTTCCCCAGAGGATCTGCCTC
TCTTACTGATCCGTTCTTTCCGCCGCCGCCGCTTCCGCTGCTTTCTGCTC
CTGCGCCGCGCAGCTCGCCGACGTCGGCGCCCACCACCGCACCCGTCTAC
TACCCGCACTACACGCCGGCACCGACGTTGGCACCGACGCCAGCACTTAG
CGTCGTGACTGGGTAAGCGCCGTTGCCACCGCCCCGGACTGGACCGCGTT
CCTGGCCGCTTTTCTGCTCAGCGCGCGCCGCGTTTCGCCCGCCGGACGTG
CGACTCCGTTCCATTTCTTCCTGTTTTATTAAGCTCGTGTTCTCGCTGCC
CGCTCCGCCGTCTCTGTGGTCCCTTTCCCTTCCGATTCCCTTCGGTTTCG
GCAAAACCTGCAGCGCGCCGACCGCGGCGCCCACCTACACGATGGCGACG
CCGAGCCCAACCACCCCGGACGAGATCGTGACGCCGGCGCCGGTCCCAAC
GTTTGCACCAACCGTGTCCGAGTACACTGGGTGAGCCGCAATCGCCACTC
GGAGGGGAAAGGGACACGCTTATTCCATTTCCGCTGCAGTGCGTTTGGCG
GCACCTTAAACGGCTCGTCCAGCGTTCGGTGGCGGTTCGTGACATTCTTG
CCGCTGGCTGCGGCGCGGCCGTTATATCAATTTTACACAAACCAAGGATG
CATGGTGCAGCCAATATCTCCTTCTCCAAACCGAGCCGCTCCATTCACCG
CCCACGTCCGCGCGTCTCCTTCGCTCGTTGCTGCTCCCTTGTCTTGCCGC
TGCCGCCTGCATCTGCCATCTGCCTTGCAGCGCTCCCACCGCGGCGCCGA
CCACGGGTGACGAGTATACGTATGCGCCGACCGCGGCACCCACCGCCGCG
CCCACCACCGCTGACGTGACCTTCGCTCCTACTTGTGAGTCCTATAACGC
TGTGTAGCAGTGCGCGTTTCGAGGAAACAGAGAAAGAAAAGAAAGTGTTG
CAGGACCCTTTGTGCGGCAGAGGACAGGGCGGCCTCTGCGGCCCGCTACG
GACACTGGTTTCACGGGATCGTTGCAAGCGTTGACCTGCTTTTTTCCTTT
CTCCTTCTCGTTTCTTCCCGGCCTTCCTTCCCCTGCAGCCGCAACGTACG
CTCCCACCCAGGCCCCGGTTTACCCAACGACCGGTGGACCAACCTCCGCC
CCGGCCGACTTCTAGGCGGGCGGCGTGAGAGGCGATGCGGCGCGGGCCGA
GTTAGTATCGAGATCGGGGAGAAGACTGGTGCCGACAGCGCGCATGTTCC
GCCGTGCCACTCCGGCGGGAGCTGCCACCGGGCCGGGCCGGCCGTAAGCG
GCAGCGACGGCACCGGCGATGGGTAAGAAGAAAAGGCGGCAGCGGGCGGG
CGGCGATGGCGCGCCGCTCCACCGGCACCGGTTAGGGAAGCATGGGCGGG
AAAGATGGCGCGGCAAGGCAGCGTCCCGCTTCTCTTGTGTTTGCCAAGCA
TCGTTTGTGCTGGCCTATTTGTTCCGGAGACCCACTTGCGTCCTTGGCCG
CGGTGTGTACGGAGAGCAGCCCCGCCAAGCCGTCAGGCGACGACTGCACG
GCGGGGCGTGTGCTAGTAAGTGGGGGAATGTCGGACGTACGGACGACGAC
GGGAATGGTACCACCCCTCAAGCGGGATGGAGCGGTCCGGACCTGTCCTG
GTGTCCAGAAGAGAGAGGGGGGCCTGGGTTTGGCGAGCAAGAGGAGGGGT
GGGGGGCGGCGAGGCAACGGGGTTCCTTTTTCCTTTGAAGCGTAGCCTTT
TTCCAGCCACGGGGGTAAGATTTCAGGGGAATTGCGGGGGAGAAGAGAGA
GAGCTGCCGCCGCTCGCTACGGGGCGTTCTTCCAAAGCACTGGCCGTGCC
GTCTTCTACGGCACGTGCCTAGAGAAGGGCAAGAGAGAGGAGAGAGTCAG
TAAGTTGGTCGCGCGATTGCTGCTGCGTGAGGAGGGGTGACGGCGCGGGG
GTGTTGAGCCGGAACCAAATGCGCCCCGGCGCCACTTTGTGGGGTTACCT
AAAACCCACGCCAGCCCGGCTGGACTCGAAAGTGAGCGACTAGCAGTGGC
GGTGGCGGGCCGGCGGCGGCAGGAGCAAGAGCCAGGAAAGCGTCCAGGCG
GCTTGTTCCCGGCGGCCCGGCCACCCGGCGGCACCTTTCCTGCCGCAGGC
ATAGGCGATAGTGCTCGGCGTCCACCAAGAAGCATGTATTTAAATATCCT
GAAGAGGCCGGGTGCCCAACTACCGCAGCTGGGGCCGGCCCTTCATTTTG
CCCCCTATAATTGTTGTCATCACATTTCTCATTAAAATGTATTGCCTTTT
TCCTAGCCCGCGGAGCCGAGAACAATAACTTCTCGTAAATGAGGGAGACG
TACCTGAAGTATATGGGATCGCACACGGCGGCAAGCGTTCGCGTGAAAAG
CTTGTTTTTCTTCCACCTCGAATGCTTGTTGCAATAGCCCGTCTACCCAG
CGCCAGGCGGGCGAATGGGGGAATCAGAGCGGCGACGCTGCCAAACATCG
GAAGCGTCGGAGGAGTGCTGGCGCGGCCTCAGGTGCTTGCCGGGGGGGGA
GTTTATGTAGCTGCAAGAAGCTAGAATCGCTGCAGGCAGCGGCCGCCTCG
CTTAGCCCTTACCGAAGGATGCCGCGCAGTGCCGGCCGAGGCAGAGCCCG
CCACACTGGTGGGCGGCGGCGGCCTTGCGGGCTCCTTGCTTTCACTTTCT
ATTTGCTGGGAAGCGCTTTCACCTTTCACCCTTCCGCTCCGCTCGTCCAC
GCACCACCCAGCTCGATTCCTGGCGAGGTCCACGCTAAAAAATTCAAACT
TGCGCGCCCGTGCCGCTCTTTCAGCCCCCAAACGCGGCAGCCATGGAGGG
GTTCAAGCGAAAGGGGACCTCTTCCATCCGCGGCGGCCTCCGGGGGCGCG
CCGTGCAGCCGCCAGCGAAACCTCCAATTCCCAAACCGCGGCGCAGGAAG
CCCTGGGACAGCAATGTCAAGGACCCCAGCATTTACAAGCTCACGCCGGC
GGAGCAGCTCCGACGGAAGGAGCTCCTTGTGTCGAAGCACAACGTGTTGA
TTTTTCAGCCCGATTCGCCGCCGCCACAGCGTCCAAAGCCTGCCGCCAAG
AAACGAGCTCCCGCAGCAGCAACGCAGCTGCAACGGCCAAATGCAGCGAC
TGCCGACAAGAATCCTTCAAATGAGATCACACCGCCCTCTTGGTCAGTGG
TGGCGCCAAAAGCAACCGTACCCAACATGGAGGAAACTGGAGAACTGCGT
CTCATGGACATTGAGGCAGAGATTGCAGCGTTCCGGCGGCGCATCGATAC
CCTGGACGTTGGTAGCGCCGACGGACGGGCTGGCGTTGACGCTGTGGGCT
CGCATTTCGGCCATGATGAAGCATCTGGAGACAGCGCCGTTGAAAACGAC
GATTGCTTCTCCAACTCGTGGTGGGACGAAGTAGCGCCGGGTGCTGCCGA
CGGCGGCGGCGACTCCGACGTGGAGGCGCTATCGTCTTCCGTAGCACCAA
TACCGACTGCGGGCCCGCCGGAGATGGACGCCACTGCCGGCTTCGACGCG
TCGCCGGCACCGGCGCCGGTGGCAGCCGGCAGCGGCTTCCCCAACCGCCG
CTCCTTCCCCGCCGCCGCTGCTGTGGGAGCTGCAGCGACGGCCGTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1858:3..4599+

>mRNA_P-wetherbeei_contig1858.1.4 ID=mRNA_P-wetherbeei_contig1858.1.4|Name=mRNA_P-wetherbeei_contig1858.1.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1113bp|location=Sequence derived from alignment at P-wetherbeei_contig1858:3..4599+ (Phaeothamnion wetherbeei SAG_119_79)
ACTTTTCCCGTCCCCCTGTTCTTGTCCCGCGCTCCGCAGGAGTACCTGAA
TACGTACGACAAGTCGGTGGTGTGCGTGCCGGACTGCGTAGGGCTTCACT
GCAACATGTTTGGCATTTGCCAGGACTGCCGCGGCTGCTACAACACGTGC
GAGGGCGCGGCATACTACATCGACACGCACCCGGGCACCCCCGGCAGTGA
GATCACCTTCTGCCCGGACAGCGGCCTGACCGACTACGACGTCGACTGCT
TCGCGGCGCCGACGCCGTCGCCGACGACGGCAGATGAAACGGTGGCACCG
ACGGCGGCGCCGACTGGCGCCGACGAGTGCTACTGCGCAGCCCAGATCAG
CGACGCCGGCAAGGAGTGGTTCTGCACCGAGGACTTTAGCATCTACTGCG
ACGCGTCGTGTGCGGAAGGCGGCCTGTGGTGCGACGCCTGGGGCTACCAG
GGGTGCCGCTTCTGTGCATTTTCGTGCGAGGGCCGCGCCGAGGACGAGTG
CGTGCTGTGCCCGCCCGACGCCGAGCACTTCGACTCGTACTGCCCCCCCG
TCACCACCTCGGCGCCCACGACTGCCCCGACACCGACGCCGACGGTTCCC
GACGAGTCCACGTACGCGCCCACCGCCGCGCCCGTCTACTACCCGACGCC
GTCTCCGACCACCTTCGACGTGACCACGGGAGGATCTGCCTCTCTTACTG
ATCCGTTCTTTCCGCCGCCGCCGCTTCCGCTGCTTTCTGCTCCTGCGCCG
CGCAGCTCGCCGACGTCGGCGCCCACCACCGCACCCGTCTACTACCCGCA
CTACACGCCGGCACCGACGTTGGCACCGACGCCAGCACTTAGCGTCGTGA
CTGGCGCGCCGACCGCGGCGCCCACCTACACGATGGCGACGCCGAGCCCA
ACCACCCCGGACGAGATCGTGACGCCGGCGCCGGTCCCAACGTTTGCACC
AACCGTCGCTCCCACCGCGGCGCCGACCACGGGTGACGAGTATACGTATG
CGCCGACCGCGGCACCCACCGCCGCGCCCACCACCGCTGACCCGGCAGCG
GCTTCCCCAACCGCCGCTCCTTCCCCGCCGCCGCTGCTGTGGGAGCTGCA
GCGACGGCCGTAG
back to top