mRNA_P-wetherbeei_contig1856.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1856.5.1
Unique NamemRNA_P-wetherbeei_contig1856.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig1856.5.1 vs. uniprot
Match: D8LIX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIX3_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.230e-11
Identity = 40/78 (51.28%), Postives = 56/78 (71.79%), Query Frame = 2 
Query:    2 VLAMQDSIVGKLRDVLNTKGVQQAGFPVRVSLPLYLGVSWVVVFKHCR------REPQFSELFDLPPNYSFSKRMRQV 217
            VL+MQD ++ KL++VL TKG+++AGFP +VSLPLYLGV   V F +C+       EP   ELF + P+YS S+RM++V
Sbjct: 1132 VLSMQDKVIHKLKEVLTTKGMREAGFPAKVSLPLYLGVYAAVTFDNCKVFKPGELEP---ELFLVKPDYSSSRRMQKV 1206
[Close]
BLAST of mRNA_P-wetherbeei_contig1856.5.1 vs. uniprot
Match: A0A6H5L593_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L593_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 4.280e-11
Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = 2 
Query:    2 VLAMQDSIVGKLRDVLNTKGVQQAGFPVRVSLPLYLGVSWVVVFKHCR------REPQFSELFDLPPNYSFSKRMRQ 214
            VL+MQD ++ KL++VL TKG+++AGFP +VSLPLYLGV   V F +C+       EP   ELF + P+YS S+RM++
Sbjct: 1378 VLSMQDKVIHKLKEVLTTKGMREAGFPAKVSLPLYLGVYAAVTFDNCKIFKPGELEP---ELFLVKPDYSSSRRMQK 1451
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1856.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIX3_ECTSI1.230e-1151.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L593_9PHAE4.280e-1150.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1856contigP-wetherbeei_contig1856:4949..6403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size786
Hectar predicted targeting categoryother localisation
Exons3
Cds size450
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186149.44387-UTR-P-wetherbeei_contig1856:4948..52831683186149.44387-UTR-P-wetherbeei_contig1856:4948..5283Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1856 4949..5283 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186149.4539115-CDS-P-wetherbeei_contig1856:5283..55191683186149.4539115-CDS-P-wetherbeei_contig1856:5283..5519Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1856 5284..5519 -
1683186149.4628096-CDS-P-wetherbeei_contig1856:5948..60881683186149.4628096-CDS-P-wetherbeei_contig1856:5948..6088Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1856 5949..6088 -
1683186149.4725547-CDS-P-wetherbeei_contig1856:6329..64031683186149.4725547-CDS-P-wetherbeei_contig1856:6329..6403Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1856 6330..6403 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1856.5.1prot_P-wetherbeei_contig1856.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1856 5284..6403 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1856.5.1

>prot_P-wetherbeei_contig1856.5.1 ID=prot_P-wetherbeei_contig1856.5.1|Name=mRNA_P-wetherbeei_contig1856.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=150bp
GVGHAGLNRRQAEGRPQYQGRSAGWVPGACVAAAVPGRQLGGGVQALPPR
AAVLRALRPPAQLLLLQAHAPGGPVAGVPSAARCGGGSGGARRRGRGSGG
DYGHGSRSGRGGGARRRNGQQHLLGRGGRVTTDVSSGGKQLTDWLTDFK*
back to top

mRNA from alignment at P-wetherbeei_contig1856:4949..6403-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1856.5.1 ID=mRNA_P-wetherbeei_contig1856.5.1|Name=mRNA_P-wetherbeei_contig1856.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1455bp|location=Sequence derived from alignment at P-wetherbeei_contig1856:4949..6403- (Phaeothamnion wetherbeei SAG_119_79)
GGTGTTGGCCATGCAGGACTCAATCGTCGGCAAGCTGAGGGACGTCCTCA
ATACCAAGGGCGTTCAGCAGGCTGGTGAGAAAGCCGCACCTGATGCCGCC
GCAGACTCGTCTTTTCCTTGCGTTGTCTGTTTTTCCTGCCTTCTCTGCGC
TCTCTTCTGCGAATGTCACTCCTTCCGATCCGCTTCTCTGGCTCCGCCGC
TCCCGGCTCTGCTCACCAACTCCTTTGTGCACCCCAAACTGCACGTCGCA
ACCTCGCCACAACCCATGCCGCCATGCTGCCACGCTGTTGCTCTGTCGCT
CTGCCGCCATATCAGGGTTCCCGGTGCGTGTGTCGCTGCCGCTGTACCTG
GGCGTCAGCTGGGTGGTGGTGTTCAAGCACTGCCGCCGCGAGCCGCAGTT
CTCCGAGCTCTTCGACCTCCCGCCCAACTACTCCTTCTCCAAGCGCATGC
GCCAGGTGTGCATCTGGGCGGGCGCACGGCGCCCGGGCGCGCGGGCGCTT
TCTGCGGGGCGGGACGCGATGTTTTGACGGGACGGACGGAGCGCCCTTTT
CTTCCCTTCTTTAGTTTACACTCGGTTTCTCCCAGCGCATGCGGCCGGTG
TGCGGCGAGGCGGGGCAGGCAGGGCGTACCGCTGGGTGCGGGATGCGGGA
AGCGGGGCAGATTTCGCCTTCTTCTTTCTGCTTTTCTTCGGTTTGTGTTC
CTCCGTTCTTGCGGGCATGATAGAAGTGGGCGCGATTTCTGTGATAACAA
CGCCTCCATGTTTGCCAAAACATGTGTGTTGTGGCTGCCTGGATTGTGTT
CCTGAGGGGACCTATGCCTCGAGAACTTAACATTCATTCCCTTTCCCTCT
CTTGCTGCTCACTTGCAACTCTTAACCGCTGCAGGTGGACCTGTGGCGGG
CGTACCAAGTGCAGCGCGCTGCGGCGGAGGCAGCGGCGGAGCAAGGCGGC
GGGGGCGCGGCAGCGGCGGTGACTATGGCCACGGCAGTCGCAGCGGCCGC
GGCGGCGGCGCGCGACGGCGAAACGGGCAACAACACCTCCTCGGACGAGG
AGGACGAGTGACAACGGACGTCAGTTCTGGCGGGAAGCAGCTGACTGATT
GGTTGACGGACTTCAAATAGGTATAGCATCGGGCAGCGAAAGCCAAAGCA
GCCAACAGTCCTTCTCTACGTTTCCTGGAGCAACGGAAGGGGGCGGACAG
CGTTTGTTTTGGTCCTGAAAAGAGGGAAAAGAAGGAAAGTGGGGCGGCTG
AAATGACCTGGGGGAAGAAGATCCAAGAGAGGTGCCAGGCAGGCGGTTGG
TTACGGACGCCGCATAGCCGCAAGCCGCCGGGCGGTCCTCGGGGGCGGCG
GCGATGTCGGGGAGGAAATTTTGGGCATGGCGGGCTGTCCATACAGTATC
ATCCCGAATTCGGGCCCTAAAGGAGGATGCATCCGTACAAAAAGAGAGCA
AAAAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1856:4949..6403-

>mRNA_P-wetherbeei_contig1856.5.1 ID=mRNA_P-wetherbeei_contig1856.5.1|Name=mRNA_P-wetherbeei_contig1856.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig1856:4949..6403- (Phaeothamnion wetherbeei SAG_119_79)
GGTGTTGGCCATGCAGGACTCAATCGTCGGCAAGCTGAGGGACGTCCTCA
ATACCAAGGGCGTTCAGCAGGCTGGGTTCCCGGTGCGTGTGTCGCTGCCG
CTGTACCTGGGCGTCAGCTGGGTGGTGGTGTTCAAGCACTGCCGCCGCGA
GCCGCAGTTCTCCGAGCTCTTCGACCTCCCGCCCAACTACTCCTTCTCCA
AGCGCATGCGCCAGGTGGACCTGTGGCGGGCGTACCAAGTGCAGCGCGCT
GCGGCGGAGGCAGCGGCGGAGCAAGGCGGCGGGGGCGCGGCAGCGGCGGT
GACTATGGCCACGGCAGTCGCAGCGGCCGCGGCGGCGGCGCGCGACGGCG
AAACGGGCAACAACACCTCCTCGGACGAGGAGGACGAGTGACAACGGACG
TCAGTTCTGGCGGGAAGCAGCTGACTGATTGGTTGACGGACTTCAAATAG
back to top