mRNA_P-wetherbeei_contig1855.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1855.1.1
Unique NamemRNA_P-wetherbeei_contig1855.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1855.1.1 vs. uniprot
Match: A0A1X6PDU0_PORUM (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PDU0_PORUM)

HSP 1 Score: 58.9 bits (141), Expect = 2.760e-8
Identity = 29/70 (41.43%), Postives = 43/70 (61.43%), Query Frame = 1
Query:    7 ALDWWNEHSVKQFPELYIVVCTVLAAPASSGGLERDFCMAGRRIRPDRTSLRPRHIEMSLFLNANIDAIP 216
            AL +W  +  +QFP L+ +  + L A ASS   ER+F +AGR +RP+R+SL    +EM   + AN D +P
Sbjct:  547 ALSFWGLNR-QQFPALFPLAASALGAAASSASCEREFSIAGRVVRPERSSLSVTSVEMHSLVGANADVLP 615          
BLAST of mRNA_P-wetherbeei_contig1855.1.1 vs. uniprot
Match: A0A1X6NWJ4_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NWJ4_PORUM)

HSP 1 Score: 57.4 bits (137), Expect = 9.520e-8
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = 1
Query:   37 KQFPELYIVVCTVLAAPASSGGLERDFCMAGRRIRPDRTSLRPRHIEMSLFLNANIDAIP--APDRIPA 237
            +QFP L+ +  + + A ASS   ER+F +AGR +RP+R+SL    +EM   + AN D +P  AP  IP+
Sbjct:  423 QQFPALFPLAASAIGAAASSASCEREFWIAGRLVRPERSSLSVTSVEMHSLVAANADVLPTDAPQCIPS 491          
BLAST of mRNA_P-wetherbeei_contig1855.1.1 vs. uniprot
Match: A0A1X7TCX8_AMPQE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TCX8_AMPQE)

HSP 1 Score: 53.5 bits (127), Expect = 1.350e-7
Identity = 26/65 (40.00%), Postives = 36/65 (55.38%), Query Frame = 1
Query:    1 EDALDWWNEHSVKQFPELYIVVCTVLAAPASSGGLERDFCMAGRRIRPDRTSLRPRHIEMSLFLN 195
            ED + WW+EH    +P L+ +    L+ P +S   ER F  AG  I   R  L+P+H+ M LFLN
Sbjct:   14 EDPIVWWSEHEAA-YPSLHKLAMKYLSIPGTSVPAERLFSKAGELISARRNRLKPKHVNMVLFLN 77          
BLAST of mRNA_P-wetherbeei_contig1855.1.1 vs. uniprot
Match: A0A6S7J0T8_PARCT (Zinc finger BED domain-containing 1-like n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7J0T8_PARCT)

HSP 1 Score: 53.1 bits (126), Expect = 4.780e-7
Identity = 27/67 (40.30%), Postives = 40/67 (59.70%), Query Frame = 1
Query:    4 DALDWWNEHSVKQFPELYIVVCTVLAAPASSGGLERDFCMAGRRIRPDRTSLRPRHIEMSLFLNANI 204
            + L WW+EH  K +P++  +    L A A+S   ER F  AG  +   R+SL+P+++ M LFLN NI
Sbjct:   57 EPLKWWHEHG-KNYPKMSKLARKYLCATATSVPSERLFSKAGELVSHRRSSLKPKNVNMLLFLNQNI 122          
BLAST of mRNA_P-wetherbeei_contig1855.1.1 vs. uniprot
Match: A0A1X7TEQ5_AMPQE (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TEQ5_AMPQE)

HSP 1 Score: 52.0 bits (123), Expect = 7.600e-6
Identity = 28/68 (41.18%), Postives = 39/68 (57.35%), Query Frame = 1
Query:    1 EDALDWWNEHSVKQFPELYIVVCTVLAAPASSGGLERDFCMAGRRIRPDRTSLRPRHIEMSLFLNANI 204
            ++ L WW E+   QFP +  V    LA P SS   ER F  AG  I   R+ L+P++++M LFLN N+
Sbjct:  489 DNPLLWWKENG-HQFPHVMKVAKKYLAIPRSSVPSERLFSKAGELISQRRSQLKPKNVDMILFLNKNL 555          
BLAST of mRNA_P-wetherbeei_contig1855.1.1 vs. uniprot
Match: A0A1X7UCW0_AMPQE (BED-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UCW0_AMPQE)

HSP 1 Score: 52.0 bits (123), Expect = 7.630e-6
Identity = 25/70 (35.71%), Postives = 40/70 (57.14%), Query Frame = 1
Query:    4 DALDWWNEHSVKQFPELYIVVCTVLAAPASSGGLERDFCMAGRRIRPDRTSLRPRHIEMSLFLNANIDAI 213
            + L+WW  ++++ FP L  +    L  P SS   ER F  AG+ +   R  ++P++I+M LFLN NI  +
Sbjct:  529 NPLEWWKANAIR-FPRLSKIAAKYLCIPGSSVPSERLFSKAGQLVSERRNRIKPKNIDMILFLNHNIKLV 597          
BLAST of mRNA_P-wetherbeei_contig1855.1.1 vs. uniprot
Match: A0A6P4EHV1_DRORH (uncharacterized protein LOC108042390 n=1 Tax=Drosophila rhopaloa TaxID=1041015 RepID=A0A6P4EHV1_DRORH)

HSP 1 Score: 47.8 bits (112), Expect = 2.490e-5
Identity = 25/66 (37.88%), Postives = 37/66 (56.06%), Query Frame = 1
Query:    4 DALDWWNEHSVKQFPELYIVVCTVLAAPASSGGLERDFCMAGRRIRPDRTSLRPRHIEMSLFLNAN 201
            D L++W +H  ++ P+L I     L  PA+S   ER F  AG  I   R SL+P+ + + LF+N N
Sbjct:    8 DPLEYWKQHE-QEMPQLAISAKQGLCIPATSTESERMFSKAGLTISDRRASLKPKTVNILLFINKN 72          
BLAST of mRNA_P-wetherbeei_contig1855.1.1 vs. uniprot
Match: G5A6F1_PHYSP (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A6F1_PHYSP)

HSP 1 Score: 48.1 bits (113), Expect = 3.570e-5
Identity = 19/43 (44.19%), Postives = 28/43 (65.12%), Query Frame = 1
Query:   73 VLAAPASSGGLERDFCMAGRRIRPDRTSLRPRHIEMSLFLNAN 201
            + A P SS  +ERDFC+AG  + P RT +   +++M +FLN N
Sbjct:   11 LFAVPTSSAHIERDFCVAGSMVTPQRTRITQHNVDMGIFLNRN 53          
BLAST of mRNA_P-wetherbeei_contig1855.1.1 vs. uniprot
Match: A0A6G0JK10_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0JK10_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 9.960e-5
Identity = 26/70 (37.14%), Postives = 40/70 (57.14%), Query Frame = 1
Query:    1 EDALDWWNEHSVKQFPELYIV---VCTVLAAPASSGGLERDFCMAGRRIRPDRTSLRPRHIEMSLFLNAN 201
            E  L +W    +++  E  ++   V  + A P+SS  +ERDFC++G  + P RTSL    I+M +FLN N
Sbjct:  101 ESVLQFWKR--LEESGEYRLIPKAVRVLFAIPSSSCQIERDFCVSGEMVSPQRTSLAGDSIDMCIFLNRN 168          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1855.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A1X6PDU0_PORUM2.760e-841.43Dimer_Tnp_hAT domain-containing protein n=1 Tax=Po... [more]
A0A1X6NWJ4_PORUM9.520e-842.03Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A1X7TCX8_AMPQE1.350e-740.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Am... [more]
A0A6S7J0T8_PARCT4.780e-740.30Zinc finger BED domain-containing 1-like n=2 Tax=P... [more]
A0A1X7TEQ5_AMPQE7.600e-641.18Dimer_Tnp_hAT domain-containing protein n=2 Tax=Am... [more]
A0A1X7UCW0_AMPQE7.630e-635.71BED-type domain-containing protein n=1 Tax=Amphime... [more]
A0A6P4EHV1_DRORH2.490e-537.88uncharacterized protein LOC108042390 n=1 Tax=Droso... [more]
G5A6F1_PHYSP3.570e-544.19Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A6G0JK10_9STRA9.960e-537.14Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1855contigP-wetherbeei_contig1855:54..296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog7897.ENSLACP00000011827
PFAMsDBD_Tnp_Hermes,Dimer_Tnp_hAT
Model size243
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.15e-08
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota,3A4I2@33154|Opisthokonta,3BRWZ@33208|Metazoa,3D90A@33213|Bilateria,48GPE@7711|Chordata,49F4E@7742|Vertebrata
DescriptionHermes transposase DNA-binding domain
Cds size243
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186149.1181235-CDS-P-wetherbeei_contig1855:53..2961683186149.1181235-CDS-P-wetherbeei_contig1855:53..296Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1855 54..296 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1855.1.1prot_P-wetherbeei_contig1855.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1855 54..296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1855.1.1

>prot_P-wetherbeei_contig1855.1.1 ID=prot_P-wetherbeei_contig1855.1.1|Name=mRNA_P-wetherbeei_contig1855.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=81bp
EDALDWWNEHSVKQFPELYIVVCTVLAAPASSGGLERDFCMAGRRIRPDR
TSLRPRHIEMSLFLNANIDAIPAPDRIPAF*
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mRNA from alignment at P-wetherbeei_contig1855:54..296-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1855.1.1 ID=mRNA_P-wetherbeei_contig1855.1.1|Name=mRNA_P-wetherbeei_contig1855.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig1855:54..296- (Phaeothamnion wetherbeei SAG_119_79)
GAGGATGCGCTGGATTGGTGGAACGAGCATAGCGTCAAGCAGTTTCCCGA GCTGTACATCGTAGTCTGCACCGTGCTGGCGGCACCGGCATCGTCGGGTG GCCTGGAGCGCGACTTCTGCATGGCCGGACGCCGCATCCGGCCCGATCGC ACCAGCCTCAGACCGCGGCACATCGAGATGAGCCTCTTTCTGAACGCCAA CATAGACGCCATTCCGGCGCCGGACCGGATTCCGGCGTTTTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1855:54..296-

>mRNA_P-wetherbeei_contig1855.1.1 ID=mRNA_P-wetherbeei_contig1855.1.1|Name=mRNA_P-wetherbeei_contig1855.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig1855:54..296- (Phaeothamnion wetherbeei SAG_119_79)
GAGGATGCGCTGGATTGGTGGAACGAGCATAGCGTCAAGCAGTTTCCCGA
GCTGTACATCGTAGTCTGCACCGTGCTGGCGGCACCGGCATCGTCGGGTG
GCCTGGAGCGCGACTTCTGCATGGCCGGACGCCGCATCCGGCCCGATCGC
ACCAGCCTCAGACCGCGGCACATCGAGATGAGCCTCTTTCTGAACGCCAA
CATAGACGCCATTCCGGCGCCGGACCGGATTCCGGCGTTTTAG
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