mRNA_P-wetherbeei_contig1855.7.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1855.7.1
Unique NamemRNA_P-wetherbeei_contig1855.7.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1855.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1855contigP-wetherbeei_contig1855:5561..6328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size768
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_007560.1
Cds size552
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186149.066175-UTR-P-wetherbeei_contig1855:5560..56941683186149.066175-UTR-P-wetherbeei_contig1855:5560..5694Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1855 5561..5694 +
1683186149.0874705-UTR-P-wetherbeei_contig1855:6246..63281683186149.0874705-UTR-P-wetherbeei_contig1855:6246..6328Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1855 6247..6328 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186149.0768452-CDS-P-wetherbeei_contig1855:5694..62461683186149.0768452-CDS-P-wetherbeei_contig1855:5694..6246Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1855 5695..6246 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1855.7.1prot_P-wetherbeei_contig1855.7.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1855 5695..6246 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1855.7.1

>prot_P-wetherbeei_contig1855.7.1 ID=prot_P-wetherbeei_contig1855.7.1|Name=mRNA_P-wetherbeei_contig1855.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=184bp
MRSFSFVPLLLLLTLHQALAFCPSVFHVRATVPHQQALHQDYIALCPGQR
NLLQSRAGKGDSPGNDGENEFKEALIDAELDAQAEEWIAGDEKRAAWWAK
MKTAKDAAKKSQANRLLGVESSINRLRLQLRSLEELTGLELNGEDGGFTS
LGLALIAATYIVPIWIAVALSSFLVAAVQQSLG*
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mRNA from alignment at P-wetherbeei_contig1855:5561..6328+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1855.7.1 ID=mRNA_P-wetherbeei_contig1855.7.1|Name=mRNA_P-wetherbeei_contig1855.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=768bp|location=Sequence derived from alignment at P-wetherbeei_contig1855:5561..6328+ (Phaeothamnion wetherbeei SAG_119_79)
GAGAGAGAAGGCCAAGGCACCATAGCAGAGCCTCTGCTTCCACAACACAA
CGCACCCAGTCCCCTGGCAGCACTTCACGTCCAGCGGGCTCTGTATAAGC
GGGAGAACGACGCTGACAAGGATCAAACGGGATCATGCGCTCGTTCTCCT
TCGTCCCTTTGCTCCTCTTGCTCACGCTGCATCAGGCACTTGCATTCTGT
CCCTCGGTATTCCACGTTCGGGCAACCGTGCCTCACCAACAGGCGCTGCA
TCAGGATTATATTGCGTTATGCCCGGGTCAACGAAACCTGTTACAATCTC
GCGCTGGGAAAGGAGACAGCCCGGGAAACGATGGAGAAAATGAATTCAAA
GAGGCTCTCATCGACGCTGAGCTGGACGCCCAAGCAGAAGAATGGATTGC
GGGCGACGAGAAGCGCGCCGCTTGGTGGGCCAAAATGAAAACCGCAAAGG
ATGCCGCGAAGAAGTCGCAAGCCAACCGTCTTCTGGGCGTCGAAAGCTCC
ATCAACCGGCTTCGCTTGCAGCTTCGGAGCCTCGAGGAGCTGACCGGGCT
GGAGCTGAATGGCGAGGACGGCGGCTTCACGTCGCTCGGCCTGGCGCTCA
TCGCGGCCACTTATATTGTCCCCATTTGGATAGCCGTAGCTTTGAGCTCC
TTTCTTGTGGCGGCCGTCCAGCAATCGCTCGGATGAAGCGGCGAAAGTAG
GAGCCTCAGATTAGGAGGTTAGTGTACTGCCACTCGAGCAATAATGTTAA
ATTTGGGTATGTGCGTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1855:5561..6328+

>mRNA_P-wetherbeei_contig1855.7.1 ID=mRNA_P-wetherbeei_contig1855.7.1|Name=mRNA_P-wetherbeei_contig1855.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig1855:5561..6328+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCTCGTTCTCCTTCGTCCCTTTGCTCCTCTTGCTCACGCTGCATCA
GGCACTTGCATTCTGTCCCTCGGTATTCCACGTTCGGGCAACCGTGCCTC
ACCAACAGGCGCTGCATCAGGATTATATTGCGTTATGCCCGGGTCAACGA
AACCTGTTACAATCTCGCGCTGGGAAAGGAGACAGCCCGGGAAACGATGG
AGAAAATGAATTCAAAGAGGCTCTCATCGACGCTGAGCTGGACGCCCAAG
CAGAAGAATGGATTGCGGGCGACGAGAAGCGCGCCGCTTGGTGGGCCAAA
ATGAAAACCGCAAAGGATGCCGCGAAGAAGTCGCAAGCCAACCGTCTTCT
GGGCGTCGAAAGCTCCATCAACCGGCTTCGCTTGCAGCTTCGGAGCCTCG
AGGAGCTGACCGGGCTGGAGCTGAATGGCGAGGACGGCGGCTTCACGTCG
CTCGGCCTGGCGCTCATCGCGGCCACTTATATTGTCCCCATTTGGATAGC
CGTAGCTTTGAGCTCCTTTCTTGTGGCGGCCGTCCAGCAATCGCTCGGAT
GA
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