mRNA_P-wetherbeei_contig18546.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18546.1.2
Unique NamemRNA_P-wetherbeei_contig18546.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18546.1.2 vs. uniprot
Match: A0A0H5QIE1_9EUKA (Uncharacterized protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QIE1_9EUKA)

HSP 1 Score: 125 bits (313), Expect = 9.390e-32
Identity = 52/102 (50.98%), Postives = 71/102 (69.61%), Query Frame = 3
Query:  204 FSITKRYVISAREVVDGDYECAAVLHGHEGDVKAVRWHPIERLLFSASYDDTVRVWAEDEDDWYCIDTLRRHTSTVWSLA-VEPAGERLATAGADGNLIVWK 506
            F  T  Y + +    DGD+EC +VL GH  DVK VRWHP +R+L S+SYDDT+++WAEDED+W+C  TLR HTSTVWS+  ++  G+R  +   D  LI+W+
Sbjct:   92 FDSTVIYELMSTVTEDGDFECISVLQGHSQDVKCVRWHPTQRMLLSSSYDDTIKIWAEDEDEWFCTQTLRGHTSTVWSIDFLDTEGKRFISCSDDQTLIIWR 193          
BLAST of mRNA_P-wetherbeei_contig18546.1.2 vs. uniprot
Match: A0A7S2Y540_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y540_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.120e-27
Identity = 49/87 (56.32%), Postives = 62/87 (71.26%), Query Frame = 3
Query:  249 DGDYECAAVLHGHEGDVKAVRWHPIERLLFSASYDDTVRVWAEDEDDWYCIDTLRRHTSTVWSLAVEPAG-ERLATAGADGNLIVWK 506
            D ++EC  VL+GH  DVK V WHP E LLFSASYD+T++VW ED DDW C+DTLR H STVW L    AG +RL +   D ++I+W+
Sbjct:   10 DNEFECLTVLNGHTQDVKFVMWHPSEDLLFSASYDNTIKVWGEDGDDWCCVDTLRGHESTVWGLCFGGAGGKRLLSCSDDRSVILWE 96          
BLAST of mRNA_P-wetherbeei_contig18546.1.2 vs. uniprot
Match: B8CDW5_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDW5_THAPS)

HSP 1 Score: 110 bits (275), Expect = 4.050e-26
Identity = 45/95 (47.37%), Postives = 63/95 (66.32%), Query Frame = 3
Query:  249 DGDYECAAVLHGHEGDVKAV-------RWHPIERLLFSASYDDTVRVWAEDEDDWYCIDTLRRHTSTVWSLAVEPAGERLATAGADGNLIVWKRY 512
            +G++EC AVL GHEGDVK++       +W   + +L SASYD++++VWAE+  DWYC  TL  HTSTVW L + P G R  +   DG++ +WK Y
Sbjct:  114 EGEFECLAVLQGHEGDVKSIAFALSHGQWGEGDEILLSASYDNSIKVWAEESGDWYCAATLAVHTSTVWCLGINPGGVRFLSGSEDGSMAIWKMY 208          
BLAST of mRNA_P-wetherbeei_contig18546.1.2 vs. uniprot
Match: A0A7S4I437_9STRA (Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I437_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.050e-25
Identity = 52/96 (54.17%), Postives = 64/96 (66.67%), Query Frame = 3
Query:  249 DGDYECAAVLHGHEGDVKAV-------RWHPIERLLFSASYDDTVRVWAEDEDDWYCIDTLRR-HTSTVWSLAVEPAGERLATAGADGNLIVWKRY 512
            DG++EC AVLHGH GDVK+V       +W   + +LFSASYDDT++ WAED  DWYC  TL   H+STVWS+A    G RL +  AD +L VWK Y
Sbjct:  216 DGEFECIAVLHGHTGDVKSVAFAPSLGQWGDGDEVLFSASYDDTIKCWAEDAGDWYCAATLSSAHSSTVWSVAAAGGGARLVSGSADKSLAVWKCY 311          
BLAST of mRNA_P-wetherbeei_contig18546.1.2 vs. uniprot
Match: B8CDW9_THAPS (Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDW9_THAPS)

HSP 1 Score: 110 bits (275), Expect = 1.780e-25
Identity = 45/95 (47.37%), Postives = 63/95 (66.32%), Query Frame = 3
Query:  249 DGDYECAAVLHGHEGDVKAV-------RWHPIERLLFSASYDDTVRVWAEDEDDWYCIDTLRRHTSTVWSLAVEPAGERLATAGADGNLIVWKRY 512
            +G++EC AVL GHEGDVK++       +W   + +L SASYD++++VWAE+  DWYC  TL  HTSTVW L + P G R  +   DG++ +WK Y
Sbjct:  216 EGEFECLAVLQGHEGDVKSIAFALSHGQWGEGDEILLSASYDNSIKVWAEESGDWYCAATLAVHTSTVWCLGINPGGVRFLSGSEDGSMAIWKMY 310          
BLAST of mRNA_P-wetherbeei_contig18546.1.2 vs. uniprot
Match: A0A7S2P244_9STRA (Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P244_9STRA)

HSP 1 Score: 109 bits (272), Expect = 4.200e-25
Identity = 48/93 (51.61%), Postives = 63/93 (67.74%), Query Frame = 3
Query:  255 DYECAAVLHGHEGDVKAVRWHPI-------ERLLFSASYDDTVRVWAEDEDDWYCIDTLRRHTSTVWSLAVEPAGERLATAGADGNLIVWKRY 512
            ++EC AVLHGH GDVK++ + P        E +LFSASYDDT++ WAED  DWYC +TL+ H STVW++A  P G RL +   D +L +WK Y
Sbjct:  190 EFECIAVLHGHAGDVKSLIFAPSNGQFGDGEDVLFSASYDDTIKCWAEDAGDWYCAETLKGHASTVWTIAAAPGGARLVSGSDDCSLGIWKCY 282          
BLAST of mRNA_P-wetherbeei_contig18546.1.2 vs. uniprot
Match: A0A7S2XJA3_9STRA (Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XJA3_9STRA)

HSP 1 Score: 109 bits (273), Expect = 4.500e-25
Identity = 52/97 (53.61%), Postives = 62/97 (63.92%), Query Frame = 3
Query:  249 DGDYECAAVLHGHEGDVKAV-------RWHPIERLLFSASYDDTVRVWAEDEDDWYCIDTLRR--HTSTVWSLAVEPAGERLATAGADGNLIVWKRY 512
            D D+EC AVL GHEGDVK V        W   + +L SASYDDT++VWAED  DWYC  TL    HT T+W+LA+ P G RL +  AD +L VWK Y
Sbjct:  232 DEDFECLAVLQGHEGDVKTVVFAPSHGMWGDGDEILLSASYDDTIKVWAEDGGDWYCAATLDSAVHTDTIWALALAPGGVRLVSGSADHSLAVWKCY 328          
BLAST of mRNA_P-wetherbeei_contig18546.1.2 vs. uniprot
Match: A0A1E7FS82_9STRA (WD40 repeat-like protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FS82_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.210e-24
Identity = 48/96 (50.00%), Postives = 67/96 (69.79%), Query Frame = 3
Query:  249 DGDYECAAVLHGHEGDVKAVRWHPI-------ERLLFSASYDDTVRVWAEDEDDWYCIDTLRR-HTSTVWSLAVEPAGERLATAGADGNLIVWKRY 512
            D ++EC AVL+GHEGDVK VR+ P        + +L SASYDD++++WAED  DWYC  +++   T T+WSLAV P G R+ +A ADG+L ++K Y
Sbjct:  140 DNEFECLAVLNGHEGDVKTVRFAPSHGIWGDGDEILLSASYDDSIKIWAEDAGDWYCAFSIQDVQTDTIWSLAVAPGGGRVISASADGSLAIFKSY 235          
BLAST of mRNA_P-wetherbeei_contig18546.1.2 vs. uniprot
Match: A0A448ZET5_9STRA (Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZET5_9STRA)

HSP 1 Score: 106 bits (264), Expect = 9.210e-24
Identity = 53/96 (55.21%), Postives = 63/96 (65.62%), Query Frame = 3
Query:  249 DGDYECAAVLHGHEGDVKAVRWHPI-------ERLLFSASYDDTVRVWAEDEDDWYCIDTLRR-HTSTVWSLAVEPAGERLATAGADGNLIVWKRY 512
            D  +EC AVL GHE DVKAVR+ P        + LL SASYD+TVRVWAED+ DWYC  +L   H  T+WSLAV P G R+ TA ADG L + + Y
Sbjct:  230 DNAFECLAVLDGHEADVKAVRFAPSHGAWGDGDELLLSASYDETVRVWAEDDGDWYCALSLGDLHGDTIWSLAVAPGGGRVVTASADGGLAILRCY 325          
BLAST of mRNA_P-wetherbeei_contig18546.1.2 vs. uniprot
Match: A0A1Z5KA97_FISSO (Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KA97_FISSO)

HSP 1 Score: 104 bits (259), Expect = 2.880e-23
Identity = 47/94 (50.00%), Postives = 64/94 (68.09%), Query Frame = 3
Query:  255 DYECAAVLHGHEGDVKAVRWHPIE-------RLLFSASYDDTVRVWAEDEDDWYCIDTLRR-HTSTVWSLAVEPAGERLATAGADGNLIVWKRY 512
            ++EC AVL+GHE DVK VR+ P          +L S+SYDDT+RVWAED  DWYC  ++   H+ST+WSLA+ P+G RL +  AD +L ++K Y
Sbjct:  187 EFECIAVLNGHEADVKCVRFAPSHDQWGDGAEILLSSSYDDTIRVWAEDAGDWYCAASISGVHSSTIWSLALAPSGARLVSGSADASLAIYKAY 280          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18546.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0H5QIE1_9EUKA9.390e-3250.98Uncharacterized protein n=1 Tax=Spongospora subter... [more]
A0A7S2Y540_9STRA1.120e-2756.32Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
B8CDW5_THAPS4.050e-2647.37Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S4I437_9STRA1.050e-2554.17Probable cytosolic iron-sulfur protein assembly pr... [more]
B8CDW9_THAPS1.780e-2547.37Probable cytosolic iron-sulfur protein assembly pr... [more]
A0A7S2P244_9STRA4.200e-2551.61Probable cytosolic iron-sulfur protein assembly pr... [more]
A0A7S2XJA3_9STRA4.500e-2553.61Probable cytosolic iron-sulfur protein assembly pr... [more]
A0A1E7FS82_9STRA1.210e-2450.00WD40 repeat-like protein (Fragment) n=1 Tax=Fragil... [more]
A0A448ZET5_9STRA9.210e-2455.21Probable cytosolic iron-sulfur protein assembly pr... [more]
A0A1Z5KA97_FISSO2.880e-2350.00Probable cytosolic iron-sulfur protein assembly pr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18546contigP-wetherbeei_contig18546:118..997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog35128.Thaps37979
PFAMsWD40
Model size524
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorymitochondrion
Exons2
Evalue4.76e-27
EggNOG OGsKOG0645@1|root,KOG0645@2759|Eukaryota,2XFA5@2836|Bacillariophyta
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-13_002620.1
DescriptionWD domain, G-beta repeat
Cds size492
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186149.0120907-CDS-P-wetherbeei_contig18546:117..2761683186149.0120907-CDS-P-wetherbeei_contig18546:117..276Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18546 118..276 -
1683186149.023515-CDS-P-wetherbeei_contig18546:632..9651683186149.023515-CDS-P-wetherbeei_contig18546:632..965Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18546 633..965 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186149.0333264-UTR-P-wetherbeei_contig18546:965..9971683186149.0333264-UTR-P-wetherbeei_contig18546:965..997Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18546 966..997 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18546.1.2prot_P-wetherbeei_contig18546.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18546 118..965 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18546.1.2

>prot_P-wetherbeei_contig18546.1.2 ID=prot_P-wetherbeei_contig18546.1.2|Name=mRNA_P-wetherbeei_contig18546.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
MLLRRADGRLLLRRLLRWRRRAIPATTALSAFKRRQSAVCGPCNDWAVPA
VMITKRTFSITKRYVISAREVVDGDYECAAVLHGHEGDVKAVRWHPIERL
LFSASYDDTVRVWAEDEDDWYCIDTLRRHTSTVWSLAVEPAGERLATAGA
DGNLIVWKRYPRRP
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mRNA from alignment at P-wetherbeei_contig18546:118..997-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18546.1.2 ID=mRNA_P-wetherbeei_contig18546.1.2|Name=mRNA_P-wetherbeei_contig18546.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=880bp|location=Sequence derived from alignment at P-wetherbeei_contig18546:118..997- (Phaeothamnion wetherbeei SAG_119_79)
CATCACCTTACAATTGGCGGCCTCGGCGGGGAATGTTGCTCCGGCGTGCT GATGGGCGGCTTCTTCTTCGACGGCTTTTACGATGGCGCCGGCGGGCGAT CCCCGCGACGACCGCTCTGTCGGCTTTCAAACGGCGGCAATCGGCCGTTT GCGGGCCGTGCAACGACTGGGCGGTTCCGGCGGTTATGATTACGAAACGG ACATTTTCGATTACAAAACGGTACGTTATATCTGCTAGGGAAGTGGTGGA CGGGGACTACGAGTGCGCGGCGGTGCTGCACGGCCACGAGGGCGACGTCA AGGCGGTGCGGTGGCACCCGATCGAGCGGCTCCTCTTCTCCGCCAGCTAC GACGACACCGTCAGGGTAGGTTGGGATCGACTGACCGATTGCACTTGGGA CGCTTCTGGTGTTGTGTTGCTTCCTTCTTTTGCCTCTCTGCGGCGCCGTC GATGGAAACCTTGGCCGCGTTTGTAGTAGCGGCACTGAGCGCCTTTTGTG CAGTATTAGAGCACTTTCTGGTATGATATTGGTTGATCCCTTCTACCCTT TGACACTATTGCAGCGACAACTCCTCTCCATGGCGGCTTGCGGCAAAAAA TCCTCTTTGCTGCGGCTATGATGACTTTGTGCGTCGATGATGACTTCCTG CGGCGGCATTCTGTCACGGCTGCGGTGGTGGCTGCAACTTTCGCGGCGGC GATGGCGGTTATTGGGTGCAGGTATGGGCGGAGGACGAGGACGACTGGTA CTGCATCGACACGCTGCGGCGGCACACCTCCACCGTCTGGTCCCTCGCCG TCGAGCCCGCCGGGGAGCGTCTCGCCACAGCCGGCGCTGATGGCAACCTT ATCGTGTGGAAGCGCTACCCGCGGAGACCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18546:118..997-

>mRNA_P-wetherbeei_contig18546.1.2 ID=mRNA_P-wetherbeei_contig18546.1.2|Name=mRNA_P-wetherbeei_contig18546.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig18546:118..997- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGCTCCGGCGTGCTGATGGGCGGCTTCTTCTTCGACGGCTTTTACG
ATGGCGCCGGCGGGCGATCCCCGCGACGACCGCTCTGTCGGCTTTCAAAC
GGCGGCAATCGGCCGTTTGCGGGCCGTGCAACGACTGGGCGGTTCCGGCG
GTTATGATTACGAAACGGACATTTTCGATTACAAAACGGTACGTTATATC
TGCTAGGGAAGTGGTGGACGGGGACTACGAGTGCGCGGCGGTGCTGCACG
GCCACGAGGGCGACGTCAAGGCGGTGCGGTGGCACCCGATCGAGCGGCTC
CTCTTCTCCGCCAGCTACGACGACACCGTCAGGGTATGGGCGGAGGACGA
GGACGACTGGTACTGCATCGACACGCTGCGGCGGCACACCTCCACCGTCT
GGTCCCTCGCCGTCGAGCCCGCCGGGGAGCGTCTCGCCACAGCCGGCGCT
GATGGCAACCTTATCGTGTGGAAGCGCTACCCGCGGAGACCC
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