mRNA_P-wetherbeei_contig1854.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1854.1.1
Unique NamemRNA_P-wetherbeei_contig1854.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1854.1.1 vs. uniprot
Match: A0A7S1UK76_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UK76_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.540e-16
Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = 3 
Query:  342 RVGDPFFVRRYNQLVPNSFRFVCDGDVVTGVPPARF---GFMHVGRSATADKTGSGSLLIDPSLLEASFKTSARIRVINHLFPAYMAALDGCLY-PIESPEEMRRLIDD 656
            RVG+  +   Y+Q+VPN +R   DGDVVT  P A +    + HVG     DK G GSL++DPS +E SF+T +R  V +HL  +Y   L+G LY P++  + M    DD
Sbjct:   68 RVGNSTWATTYDQMVPNMYRVTVDGDVVTNAPRAGYTCLSWKHVGVGIVIDKEGRGSLIVDPSFVERSFRTKSRRSVSSHLLNSYRCGLEGVLYGPLDEGQGMEVTEDD 176
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BLAST of mRNA_P-wetherbeei_contig1854.1.1 vs. uniprot
Match: D7G7X3_ECTSI (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X3_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 3.350e-14
Identity = 45/102 (44.12%), Postives = 57/102 (55.88%), Query Frame = 3 
Query:  342 RVGDPFFVRRYNQLVPNSFRFVCDGDVVTGVPPARFGFMHVGRSATADKTGSGSLLIDPSLLEASFKTSARIRVINHLFPAYMAALDGCLYPIESPEEMRRL 647
            R G+  +  RYN +VP+SFR V DGD V GVP   + + HVG     D  G GSL+IDPS +E  F T ++  V++H  P Y   L G L     PE  RRL
Sbjct:  110 RAGNAIYAARYNDVVPDSFRVVVDGDPVPGVPS--WWYTHVGTKVLIDGHGRGSLIIDPSFVEKRFFTRSKRHVLSHRIPNYQTGLRGNLLQAVPPEFQRRL 209
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BLAST of mRNA_P-wetherbeei_contig1854.1.1 vs. uniprot
Match: A0A7S0SWE1_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWE1_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 5.000e-12
Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 3 
Query:  342 RVGDPFFVRRYNQLVPNSFRFVCDGDVVTGVPPARFGFMHVGRSATADKTGSGSLLIDPSLLEASFKTSARIRVINHLFPAYMAALDGCLYPIE 623
            + G+  F + Y+++VPNSFR + DGD++T +PP+  G+ H+G +   D  GSGS++IDPS +E   +T  +  V  H    Y   L+G  Y  E
Sbjct:  111 KCGNNSFKQLYDRIVPNSFRVIVDGDLITRLPPS--GYSHIGTAVVVDSLGSGSIIIDPSFVERWLRTQTKASVSAHSLLIYRKGLEGVKYASE 202
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BLAST of mRNA_P-wetherbeei_contig1854.1.1 vs. uniprot
Match: A0A7S2DGL2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DGL2_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 8.270e-12
Identity = 40/90 (44.44%), Postives = 55/90 (61.11%), Query Frame = 3 
Query:  342 RVGDPFFVRRYNQLVPNSFRFVCDGDVVTGVPPARFGFMHVGRSATADKTGSGSLLIDPSLLEASFKTSARIRVINHLFPAYMAALDGCL 611
            RVG+  F  RY+ L+PN FR V DGD+VTG+P  R  + HVG     D   +GSL++DPS +E +F+T A+  + +H    Y  AL  CL
Sbjct:  467 RVGNFAFASRYDDLIPNCFRVVVDGDIVTGIP--RAWYKHVGTEVVVDC--AGSLIVDPSFVERAFQTMAKRSLASHSLAVYRPALRSCL 552
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BLAST of mRNA_P-wetherbeei_contig1854.1.1 vs. uniprot
Match: D8LEN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN4_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 9.880e-12
Identity = 42/97 (43.30%), Postives = 55/97 (56.70%), Query Frame = 3 
Query:  342 RVGDPFFVRRYNQLVPNSFRFVCDGDVVTGVPPARFGFMHVGRSATADKTGSGSLLIDPSLLEASFKTSARIRVINHLFPAYMAALDGCLYPIESPE 632
            R G+  F  R +++VP+SFR V DGD V G+P  R+   H G  A  D  G GSL+IDPS +E  F   ++  V++HL  AY A L G L     PE
Sbjct: 1297 RAGNSIFAARCDEVVPDSFRVVVDGDPVPGIPSWRYA--HAGTQALIDGRGRGSLIIDPSFVEKRFFARSKRHVLSHLVHAYQAGLRGNLLQAVPPE 1391
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BLAST of mRNA_P-wetherbeei_contig1854.1.1 vs. uniprot
Match: A0A7S1ULZ9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1ULZ9_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 5.110e-11
Identity = 35/76 (46.05%), Postives = 47/76 (61.84%), Query Frame = 3 
Query:  342 RVGDPFFVRRYNQLVPNSFRFVCDGDVVTGVPPARF---GFMHVGRSATADKTGSGSLLIDPSLLEASFKTSARIR 560
            RVG+  +   Y+Q+VPN +R   DGDVVT  P A +    + HVG     DK G GSL++DPS +E SF+T +R R
Sbjct:   68 RVGNSTWATTYDQMVPNMYRVTVDGDVVTNAPRAGYTCLSWKHVGVGIVIDKEGRGSLIVDPSFVERSFRTKSRRR 143
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BLAST of mRNA_P-wetherbeei_contig1854.1.1 vs. uniprot
Match: A0A1W0A2H2_9STRA (Lipase_3 domain-containing protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2H2_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 7.110e-11
Identity = 37/90 (41.11%), Postives = 53/90 (58.89%), Query Frame = 3 
Query:  342 RVGDPFFVRRYNQLVPNSFRFVCDGDVVTGVPPARFGFMHVGRSATADKTGSGSLLIDPSLLEASFKTSARIRVINHLFPAYMAALDGCL 611
            RVG+P FVR+YN  VPNSFR V DGD+V G+P     + HVG     D   +G++++DPS +E     S++ +V +H    Y   L  C+
Sbjct:  740 RVGNPAFVRQYNNKVPNSFRIVFDGDLVAGIPRFWGLYEHVGSEVAIDD--AGNVIVDPSFVERRLLVSSKTKVASHATLVYRTGLRNCM 827
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BLAST of mRNA_P-wetherbeei_contig1854.1.1 vs. uniprot
Match: A0A812RKV5_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RKV5_SYMMI)

HSP 1 Score: 75.5 bits (184), Expect = 9.500e-11
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 3 
Query:  342 RVGDPFFVRRYNQLVPNSFRFVCDGDVVTGVPPARFGFMHVGRSATADKTGSGSLLIDPSLLEASFKTSARIRVINHLFPAYMAALDG 605
            RVG+  F   YN++VPNSFR V DGD+V+GVP   +   H+G     D  G+GS++IDPS +E   +T  +  +  H    Y   L G
Sbjct:  194 RVGNWHFATEYNRIVPNSFRIVVDGDIVSGVPKGNY--KHIGTEIIVDPLGAGSIIIDPSFVEKFLRTHNKTSMSVHSLVFYRRGLQG 279
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BLAST of mRNA_P-wetherbeei_contig1854.1.1 vs. uniprot
Match: A0A7S4VHR9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VHR9_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.980e-9
Identity = 36/111 (32.43%), Postives = 60/111 (54.05%), Query Frame = 3 
Query:  330 WSNGRVGDPFFVRRYNQLVPNSFRFVCDGDVVTGVPPARFGFMHVGRSATADKTGSGSLLIDPSLLEASFKTSARIRVINHLFPAYMAALDGCLYPIESPEEMRRLIDDIY 662
            + + +VG PF+   YNQ+VP++ R VCDGD++T  P    G++HV   +  D TGS  + +DP+L+E       R +  +H    Y++ +    +P  S EE+  +    Y
Sbjct: 1053 YGSPKVGGPFWAAAYNQVVPDTQRIVCDGDIITSGP--FMGYLHVKTESIFDFTGS--VRVDPNLMEKQITLKKRNKASSHFLSNYLSVIRKSFHPDFSEEELMNITRSHY 1159
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BLAST of mRNA_P-wetherbeei_contig1854.1.1 vs. uniprot
Match: A0A7S3XUJ7_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUJ7_HETAK)

HSP 1 Score: 68.2 bits (165), Expect = 2.380e-8
Identity = 31/69 (44.93%), Postives = 48/69 (69.57%), Query Frame = 3 
Query:  312 RSLYFFWSNGRVGDPFFVRRYNQLVPNSFRFVCDGDVVTGVPPARFGFMHVGRSATADKTGSGSLLIDP 518
            R + + + + R+G+  F RRY++LVP ++R  CDGDVVTGVP A +   HVG++   D TGSG ++++P
Sbjct:  451 RLVAYTFGSPRLGNHVFSRRYDELVPETYRIECDGDVVTGVPKAWY--KHVGQNILVDGTGSGMIIVEP 517
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1854.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A7S1UK76_9STRA1.540e-1642.20Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
D7G7X3_ECTSI3.350e-1444.12Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S0SWE1_9STRA5.000e-1238.30Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S2DGL2_9STRA8.270e-1244.44Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
D8LEN4_ECTSI9.880e-1243.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1ULZ9_9STRA5.110e-1146.05Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A1W0A2H2_9STRA7.110e-1141.11Lipase_3 domain-containing protein (Fragment) n=1 ... [more]
A0A812RKV5_SYMMI9.500e-1140.91Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A7S4VHR9_9STRA2.980e-932.43Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S3XUJ7_HETAK2.380e-844.93Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1854contigP-wetherbeei_contig1854:390..2160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1755
Hectar predicted targeting categoryother localisation
Exons2
Cds size960
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186148.9096267-UTR-P-wetherbeei_contig1854:389..8441683186148.9096267-UTR-P-wetherbeei_contig1854:389..844Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1854 390..844 +
1683186148.9380836-UTR-P-wetherbeei_contig1854:1820..21601683186148.9380836-UTR-P-wetherbeei_contig1854:1820..2160Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1854 1821..2160 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186148.9192727-CDS-P-wetherbeei_contig1854:844..16121683186148.9192727-CDS-P-wetherbeei_contig1854:844..1612Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1854 845..1612 +
1683186148.928232-CDS-P-wetherbeei_contig1854:1628..18201683186148.928232-CDS-P-wetherbeei_contig1854:1628..1820Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1854 1629..1820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1854.1.1prot_P-wetherbeei_contig1854.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1854 845..1820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1854.1.1

>prot_P-wetherbeei_contig1854.1.1 ID=prot_P-wetherbeei_contig1854.1.1|Name=mRNA_P-wetherbeei_contig1854.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=320bp
MHVGRSATADKTGSGSLLIDPSLLEASFKTSARIRVINHLFPAYMAALDG
CLYPIESPEEMRRLIDDIYRDRSDLDFLGCARFWLTCDGRLQRGRRWCAA
GAGVADADAAEAAVVAEMEEGGADAPRRWRRWRRSKIFRKSDSSGARAGG
AADDDSSNGGATGGHDSGSETDGASDTSNDEGGFFKAGCGWGCGGCARRD
DVILNPARGGGGSGSAVARRRQLRRRMRSNRAPSMGSTDNMDPLGDGKED
DPDATAASGGCGGGGGGGGGGSGGNRCQCCRGAGGEGVCSGAKGGAGPQW
WWRGHAQKGMAFCMDIWNS*
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mRNA from alignment at P-wetherbeei_contig1854:390..2160+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1854.1.1 ID=mRNA_P-wetherbeei_contig1854.1.1|Name=mRNA_P-wetherbeei_contig1854.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1771bp|location=Sequence derived from alignment at P-wetherbeei_contig1854:390..2160+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCGATGGCGGGGGCGGCGGCGTATCACGAGTACGATGAGGAGATCGGC
ATCACCATGTACAACTTTGGCAGTCCGAGGTCCGTCTTTCGGAAGTTGGA
ACGGCTCGCGGGTTTCACTGCCGGCTTCGCGGACGTTGAAACTTGTAACG
TCTGGAAACGGTAACTAAGTCGCTAGCTAAGACTGCCCGGCCGTACGCTC
AGGATTCTTGTGTGCTGATAGATAGGTCTACCACGAAAAGGGCTGACTCG
GATACAGGCCGCCAGCTTCTTTTCTTAAACCAGCTCGAACCACCGCTACC
GTCGCTCTGGCCGTTCCCTTTACTTTTTTTGGTCAAACGGTAGGGTGGGC
GATCCATTCTTCGTGCGGCGTTACAACCAGCTGGTCCCGAATTCCTTCCG
CTTCGTCTGCGACGGTGACGTCGTGACCGGAGTGCCGCCGGCGCGCTTTG
GCTTCATGCACGTCGGGCGGTCAGCCACAGCCGACAAGACGGGCAGCGGA
TCCCTCCTGATCGACCCGAGTCTCCTGGAGGCGTCCTTCAAGACCAGCGC
CCGCATTCGCGTCATCAATCACCTCTTTCCGGCATACATGGCGGCGCTCG
ACGGCTGTCTTTACCCGATCGAGAGCCCTGAGGAGATGCGGCGGCTGATC
GATGACATTTACCGCGACCGCAGTGACCTTGACTTTCTCGGCTGCGCCCG
CTTCTGGCTGACGTGTGACGGCCGGCTGCAACGCGGCCGCCGCTGGTGCG
CCGCGGGCGCCGGGGTCGCCGACGCCGACGCCGCCGAGGCCGCCGTCGTC
GCCGAGATGGAAGAGGGAGGCGCAGACGCGCCGCGGCGCTGGCGGCGCTG
GCGGCGGAGCAAGATTTTCCGGAAAAGTGACAGCAGCGGCGCCCGCGCCG
GCGGTGCAGCCGACGACGACAGCAGCAATGGTGGCGCCACCGGTGGCCAC
GACAGCGGCAGCGAGACGGATGGCGCCAGCGACACGAGTAACGACGAGGG
AGGATTTTTCAAGGCTGGCTGTGGCTGGGGCTGCGGCGGCTGCGCGCGTC
GCGATGACGTAATCCTCAACCCTGCCCGCGGTGGCGGCGGCAGCGGCAGC
GCTGTCGCCCGCCGCCGGCAGCTCCGCCGGCGTATGCGGTCCAATCGGGC
GCCATCAATGGGTTCCACTGACAACATGGACCCGCTCGGCGACGGGAAGG
AGGACGACCCCGATGCCACTGCTGTGGCAGCGGCGTGAGGCATCTGGTGG
ATGCGGTGGTGGTGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCAACCGCT
GCCAATGCTGCCGCGGCGCTGGTGGCGAAGGCGTATGCAGCGGCGCGAAA
GGAGGAGCCGGGCCGCAGTGGTGGTGGCGAGGTCATGCGCAAAAGGGCAT
GGCCTTCTGCATGGATATTTGGAATTCGTAAGGTAAATACTTGAGTGTCT
GGCAGGCCCCAGTAGGCGGCAATGATTGTGAAGAGAGCGGTGCAGTGCAC
GAAGGTTTGGTGCAGAGGCACAATTTGGACGGTTACCGCCGCGCAGAGAG
ATGCCAAACAAGGGCAAGACGGCGGGGAGCAAGCGCTCTATCGTTGGGAG
GCGGAGCCACAAGTTGTAGCTGCCGCGGTCTTTTGGCAGATGTGATGTTC
CAGAGGAAGGCAAGGGCCGGCCGAAATGACTGGCTGAAGGTAGTTGAGAG
GGGAGTTCCGGCTTTCTCTCGTCACGGTTGTTGTTTTTCAAGCGGCACTG
AGGTGTTTCCTTCAATACAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1854:390..2160+

>mRNA_P-wetherbeei_contig1854.1.1 ID=mRNA_P-wetherbeei_contig1854.1.1|Name=mRNA_P-wetherbeei_contig1854.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=960bp|location=Sequence derived from alignment at P-wetherbeei_contig1854:390..2160+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCACGTCGGGCGGTCAGCCACAGCCGACAAGACGGGCAGCGGATCCCT
CCTGATCGACCCGAGTCTCCTGGAGGCGTCCTTCAAGACCAGCGCCCGCA
TTCGCGTCATCAATCACCTCTTTCCGGCATACATGGCGGCGCTCGACGGC
TGTCTTTACCCGATCGAGAGCCCTGAGGAGATGCGGCGGCTGATCGATGA
CATTTACCGCGACCGCAGTGACCTTGACTTTCTCGGCTGCGCCCGCTTCT
GGCTGACGTGTGACGGCCGGCTGCAACGCGGCCGCCGCTGGTGCGCCGCG
GGCGCCGGGGTCGCCGACGCCGACGCCGCCGAGGCCGCCGTCGTCGCCGA
GATGGAAGAGGGAGGCGCAGACGCGCCGCGGCGCTGGCGGCGCTGGCGGC
GGAGCAAGATTTTCCGGAAAAGTGACAGCAGCGGCGCCCGCGCCGGCGGT
GCAGCCGACGACGACAGCAGCAATGGTGGCGCCACCGGTGGCCACGACAG
CGGCAGCGAGACGGATGGCGCCAGCGACACGAGTAACGACGAGGGAGGAT
TTTTCAAGGCTGGCTGTGGCTGGGGCTGCGGCGGCTGCGCGCGTCGCGAT
GACGTAATCCTCAACCCTGCCCGCGGTGGCGGCGGCAGCGGCAGCGCTGT
CGCCCGCCGCCGGCAGCTCCGCCGGCGTATGCGGTCCAATCGGGCGCCAT
CAATGGGTTCCACTGACAACATGGACCCGCTCGGCGACGGGAAGGAGGAC
GACCCCGATGCCACTGCTGCATCTGGTGGATGCGGTGGTGGTGGCGGCGG
CGGCGGCGGCGGCAGCGGCGGCAACCGCTGCCAATGCTGCCGCGGCGCTG
GTGGCGAAGGCGTATGCAGCGGCGCGAAAGGAGGAGCCGGGCCGCAGTGG
TGGTGGCGAGGTCATGCGCAAAAGGGCATGGCCTTCTGCATGGATATTTG
GAATTCGTAA
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