mRNA_P-wetherbeei_contig18537.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18537.2.1
Unique NamemRNA_P-wetherbeei_contig18537.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18537.2.1 vs. uniprot
Match: W4H9J4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H9J4_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 6.110e-7
Identity = 57/150 (38.00%), Postives = 75/150 (50.00%), Query Frame = 1 
Query:    1 DRAEERAKAEAAFDAVDVERRGIVRPEQWPLLFEAAGSPWWEERYVRLMSGMADVSGGVTREAFLRGYV-AWLFAAEGSGDXXXXXXXXXXXXXXXSGAAVASGLGDFGSRSGILGEGQWKCDSCLVHNDEA-ALQCVSCEAPNPDRTGA 444
            +RAEE AKA AAFDAVD +  G +    +  LF+A G+ +  + + R +  + D  G V +E F+  YV            XXXXXXXXX      S   +   +  F        EG WKCD C+V N  A A  CV+CE+PNP    A
Sbjct:  497 ERAEEFAKASAAFDAVDTDGVGAIPLADFENLFDALGTVYAADAHTRTIRKL-DRHGEVRKEDFVAWYVDXXXXXXXXXXXXXXXXXXXXVDTTMKSDEDIRKAMEKFRRP-----EGSWKCDECMVLNLVAGAAACVACESPNPTAAAA 640
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18537.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
W4H9J4_9STRA6.110e-738.00Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18537contigP-wetherbeei_contig18537:677..1180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LRY5
PFAMsPro_isomerase,SYF2
Model size462
Max annot lvl2759|Eukaryota
KEGG koko:K09566
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.26e-16
EggNOG OGsCOG0652@1|root,KOG0865@2759|Eukaryota
EC5.2.1.8
Descriptionpeptidyl-prolyl cis-trans isomerase activity
Cds size462
COG categoryO
BRITEko00000,ko01000,ko03041,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186148.829015-CDS-P-wetherbeei_contig18537:676..8461683186148.829015-CDS-P-wetherbeei_contig18537:676..846Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18537 677..846 -
1683186148.8408082-CDS-P-wetherbeei_contig18537:888..11801683186148.8408082-CDS-P-wetherbeei_contig18537:888..1180Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18537 889..1180 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18537.2.1prot_P-wetherbeei_contig18537.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18537 677..1180 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18537.2.1

>prot_P-wetherbeei_contig18537.2.1 ID=prot_P-wetherbeei_contig18537.2.1|Name=mRNA_P-wetherbeei_contig18537.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=154bp
DRAEERAKAEAAFDAVDVERRGIVRPEQWPLLFEAAGSPWWEERYVRLMS
GMADVSGGVTREAFLRGYVAWLFAAEGSGDDDDDSGGGDGGSDGGSGAAV
ASGLGDFGSRSGILGEGQWKCDSCLVHNDEAALQCVSCEAPNPDRTGAGD
GVA*
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mRNA from alignment at P-wetherbeei_contig18537:677..1180-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18537.2.1 ID=mRNA_P-wetherbeei_contig18537.2.1|Name=mRNA_P-wetherbeei_contig18537.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig18537:677..1180- (Phaeothamnion wetherbeei SAG_119_79)
GATCGGGCAGAAGAGCGGGCGAAGGCCGAGGCGGCGTTCGACGCAGTCGA
CGTGGAGCGGCGGGGCATTGTGAGGCCTGAGCAGTGGCCGCTGCTCTTCG
AGGCGGCGGGCTCGCCGTGGTGGGAGGAAAGGTACGTCAGGTTGATGTCG
GGCATGGCAGACGTGAGCGGTGGGGTGACGCGCGAGGCGTTCCTGCGCGG
CTACGTGGCATGGCTCTTTGCGGCCGAGGGCAGCGGCGACGACGATGACG
ACAGCGGCGGCGGCGACGGTGGCAGCGACGGCGGCAGCGGTGGTCCGGAC
GGTGGGGGCGGCGGTGGCAGCGGCGGCTGGATAGCTGCGGTCGCCTCTGG
CCTCGGCGACTTCGGCAGCAGGAGTGGGATTCTCGGCGAGGGGCAGTGGA
AGTGTGACTCTTGCCTCGTCCACAACGACGAGGCAGCGTTGCAGTGTGTG
TCGTGCGAGGCGCCCAACCCGGACCGGACGGGCGCCGGCGACGGAGTCGC
GTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18537:677..1180-

>mRNA_P-wetherbeei_contig18537.2.1 ID=mRNA_P-wetherbeei_contig18537.2.1|Name=mRNA_P-wetherbeei_contig18537.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig18537:677..1180- (Phaeothamnion wetherbeei SAG_119_79)
GATCGGGCAGAAGAGCGGGCGAAGGCCGAGGCGGCGTTCGACGCAGTCGA
CGTGGAGCGGCGGGGCATTGTGAGGCCTGAGCAGTGGCCGCTGCTCTTCG
AGGCGGCGGGCTCGCCGTGGTGGGAGGAAAGGTACGTCAGGTTGATGTCG
GGCATGGCAGACGTGAGCGGTGGGGTGACGCGCGAGGCGTTCCTGCGCGG
CTACGTGGCATGGCTCTTTGCGGCCGAGGGCAGCGGCGACGACGATGACG
ACAGCGGCGGCGGCGACGGTGGCAGCGACGGCGGCAGCGGTGCTGCGGTC
GCCTCTGGCCTCGGCGACTTCGGCAGCAGGAGTGGGATTCTCGGCGAGGG
GCAGTGGAAGTGTGACTCTTGCCTCGTCCACAACGACGAGGCAGCGTTGC
AGTGTGTGTCGTGCGAGGCGCCCAACCCGGACCGGACGGGCGCCGGCGAC
GGAGTCGCGTGA
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