mRNA_P-wetherbeei_contig1853.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1853.1.2
Unique NamemRNA_P-wetherbeei_contig1853.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1853.1.2 vs. uniprot
Match: D7G7V7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7V7_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 1.750e-59
Identity = 95/149 (63.76%), Postives = 109/149 (73.15%), Query Frame = 1
Query:   40 STAGKKRSXXXSGGPGDGPAHPFPTDYCDHFETPLRAYRDAEPVLVGLAAALGKARAELQIWDPFFCAGRTPRLLAQLGFTSVHHENVDFYEVIRQGAVPPHDVFVTNPPYSGNHKRRCLEFCAASGKPWLLLMPNYVATKDYYRSSAL 486
            S AGKKR       P     HPFPT+Y DHFETPL+AYRD E  L  LA  L K R  L+IWDP++CAGRTPRLL QLGF  V H N DFY+V+R+   P HDV +TNPPYSG+HK+RCLE+C ASGKPW LL+PNYVATKDYYR + L
Sbjct:   87 SLAGKKRPRESLAAPHH---HPFPTEYGDHFETPLQAYRDIEVALALLAKLLDKKRKHLRIWDPYYCAGRTPRLLGQLGFPKVEHSNQDFYKVVREKRQPKHDVLITNPPYSGDHKKRCLEYCRASGKPWFLLVPNYVATKDYYRLAVL 232          
BLAST of mRNA_P-wetherbeei_contig1853.1.2 vs. uniprot
Match: A0A7S0D9T2_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D9T2_MICPS)

HSP 1 Score: 164 bits (414), Expect = 8.110e-46
Identity = 74/127 (58.27%), Postives = 93/127 (73.23%), Query Frame = 1
Query:  100 HPFPTDYCDHFETPLRAYRDAEPVLVGLAAALGKARAELQIWDPFFCAGRTPRLLAQLGFTSVHHENVDFYEVIRQGAVPPHDVFVTNPPYSGNHKRRCLEFCAASGKPWLLLMPNYVATKDYYRSS 480
            HPF  D  DH ETP  AY+D EP L  +A AL K + +L+I+DP+FC G   + LA+LGFT+V++EN DFY+VI Q  VPPHDV +TNPPYSG+H R+ LEFC  S KPWLLL+PN+V  K YY+ S
Sbjct:   23 HPFEVDAADHCETPFAAYQDVEPFLFRVALALRKPKEKLRIYDPYFCEGSVAKHLARLGFTNVYNENEDFYKVIEQNRVPPHDVLLTNPPYSGDHFRKILEFCGRSEKPWLLLLPNFVCRKTYYQPS 149          
BLAST of mRNA_P-wetherbeei_contig1853.1.2 vs. uniprot
Match: A0A6U0XTY6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0XTY6_9STRA)

HSP 1 Score: 158 bits (400), Expect = 3.490e-44
Identity = 75/125 (60.00%), Postives = 85/125 (68.00%), Query Frame = 1
Query:   97 AHPFPTDYCDHFETPLRAYRDAEPVLVGLAAALGKARAELQIWDPFFCAGRTPRLLAQLGFTSVHHENVDFYEVIRQGAVPPHDVFVTNPPYSGNHKRRCLEFCAASGKPWLLLMPNYVATKDYY 471
            AHPF T+Y DHFETPL AY+   PVL  +A  LGK   EL+I+DPF+CAG     +A LGF  + H N DFY    +G VP  DV VTNPPYS +HK R L FC  SGKPW LLMPNYVATK YY
Sbjct:    8 AHPFSTEYGDHFETPLIAYKHLRPVLCWIAKRLGKKPKELRIYDPFYCAGAVVGRMASLGFPRLIHRNEDFYRCESEGRVPAFDVLVTNPPYSLDHKERILNFCVTSGKPWALLMPNYVATKQYY 132          
BLAST of mRNA_P-wetherbeei_contig1853.1.2 vs. uniprot
Match: C1FIX8_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FIX8_MICCC)

HSP 1 Score: 155 bits (392), Expect = 4.520e-41
Identity = 69/125 (55.20%), Postives = 91/125 (72.80%), Query Frame = 1
Query:  100 HPFPTDYCDHFETPLRAYRDAEPVLVGLAAALGKARAELQIWDPFFCAGRTPRLLAQLGFTSVHHENVDFYEVIRQGAVPPHDVFVTNPPYSGNHKRRCLEFCAASGKPWLLLMPNYVATKDYYR 474
            HPF  D  DH ETP +AY+D EP L  +A AL K + +L+I+DP+FC G   + LA+LGFTSV+++N DFY+ I +  +P HDV +TNPPYSG+H RR L FCA + KPWLLL+PN+V  K YY+
Sbjct:  130 HPFEVDAADHCETPFQAYQDIEPFLFRMALALKKPKDKLRIYDPYFCEGSVAKHLARLGFTSVYNKNEDFYKCIEEKRIPEHDVLLTNPPYSGDHFRRILSFCAKNKKPWLLLLPNFVCRKQYYQ 254          
BLAST of mRNA_P-wetherbeei_contig1853.1.2 vs. uniprot
Match: A0A4D9CYX8_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CYX8_9STRA)

HSP 1 Score: 154 bits (388), Expect = 7.790e-41
Identity = 70/126 (55.56%), Postives = 84/126 (66.67%), Query Frame = 1
Query:   94 PAHPFPTDYCDHFETPLRAYRDAEPVLVGLAAALGKARAELQIWDPFFCAGRTPRLLAQLGFTSVHHENVDFYEVIRQGAVPPHDVFVTNPPYSGNHKRRCLEFCAASGKPWLLLMPNYVATKDYY 471
            P++PFPTDY DHFE+PLRAY D EP L  L  AL + +  L I+DP++C G    LL  LGF  V ++  DFY  +  G VP +DV VTNPPYS NHK + L FC  S KPW LL+PNYVA K YY
Sbjct:  147 PSYPFPTDYADHFESPLRAYEDLEPFLQWLRRALRRDKTSLHIYDPYYCQGAVVNLLKSLGFPRVTNKMRDFYADVAAGTVPSYDVLVTNPPYSDNHKEKILRFCLGSDKPWCLLLPNYVANKSYY 272          
BLAST of mRNA_P-wetherbeei_contig1853.1.2 vs. uniprot
Match: A0A7S1IGA0_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IGA0_9EUGL)

HSP 1 Score: 152 bits (383), Expect = 8.900e-41
Identity = 67/122 (54.92%), Postives = 88/122 (72.13%), Query Frame = 1
Query:  115 DYCDHFETPLRAYRDAEPVLVGLAAALGKARAELQIWDPFFCAGRTPRLLAQLGFTSVHHENVDFYEVIRQGAVPPHDVFVTNPPYSGNHKRRCLEFCAASGKPWLLLMPNYVATKDYYRSS 480
            +Y DHFET  +AY+D  P+L   A  + +  + L I+DPF+C G   R LA LGF +VHHE  DFY  ++ G VP HD+ +TNPPYSG+HK R LE+C ASGKPW LL+PNY+ATK+YY+S+
Sbjct:   96 EYGDHFETCDQAYKDITPLLKEAARLMQRDASSLGIYDPFYCDGAVKRHLAALGFHTVHHEKRDFYADVKNGQVPEHDILITNPPYSGDHKERILEYCCASGKPWALLLPNYIATKNYYQST 217          
BLAST of mRNA_P-wetherbeei_contig1853.1.2 vs. uniprot
Match: A0A7R9V2F9_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V2F9_9CHLO)

HSP 1 Score: 150 bits (380), Expect = 2.420e-40
Identity = 70/132 (53.03%), Postives = 88/132 (66.67%), Query Frame = 1
Query:   94 PAHPFPTDYCDHFETPLRAYRDAEPVLVGLAAALGKARAELQIWDPFFCAGRTPRLLAQLGFTSVHHENVDFYEVIRQGAVPPHDVFVTNPPYSGNHKRRCLEFCAASGKPWLLLMPNYVATKDYYRSSALT 489
            P  P+PTDY DHFET   A  D EP L  LA  LGK ++EL ++DP++C G   +   Q+G   + HE  DFY  ++ G+VP +D+ VTNPPYSG+HK R L+FC  SGK W LLMPNYVATK Y+ S A T
Sbjct:   79 PCWPYPTDYLDHFETSKEAIADLEPALYRLATHLGKPKSELVVYDPYYCKGTIRQHWEQIGVKRLIHEKRDFYADVKSGSVPEYDILVTNPPYSGDHKERILQFCMESGKAWALLMPNYVATKLYFTSIAST 210          
BLAST of mRNA_P-wetherbeei_contig1853.1.2 vs. uniprot
Match: A0A7R9VAV0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VAV0_9CHLO)

HSP 1 Score: 150 bits (379), Expect = 9.380e-40
Identity = 74/134 (55.22%), Postives = 88/134 (65.67%), Query Frame = 1
Query:   73 SGGPGDGPAHPFP-TDYCDHFETPLRAYRDAEPVLVGLAAALGKARAELQIWDPFFCAGRTPRLLAQLGFTSVHHENVDFYEVIRQGAVPPHDVFVTNPPYSGNHKRRCLEFCAASGKPWLLLMPNYVATKDYY 471
            +G P   P H F  TD  DH ETP  AYRD EP+L  LA  LG+ +  L+I+DP+FCAG   R L  LGFT V +ENVDFY     G+VP  DV VTNPP+S +H  RC+EF A  GKPW LLMP++VA K YY
Sbjct:  206 AGAPAALPRHTFDVTDTRDHAETPFEAYRDLEPLLFRLAGQLGRTKDSLRIYDPYFCAGSVKRHLGHLGFTHVFNENVDFYAASAAGSVPEFDVLVTNPPFSADHMARCVEFAAGCGKPWALLMPDFVAKKAYY 339          
BLAST of mRNA_P-wetherbeei_contig1853.1.2 vs. uniprot
Match: D7G4N4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4N4_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 1.210e-39
Identity = 76/146 (52.05%), Postives = 92/146 (63.01%), Query Frame = 1
Query:  100 HPFPTDYCDHFETPLRAYRDAEPVLVGLAAALGKARAELQIWDPFFCAGRTPRLLAQLGFTSVHHENVDFYEVIRQGAVPPHDVFVTNPPYSGNHKRRCLEFCAASG-KPWLLLMPNYVATKDYYRSSALTRTPASATGRFTWCPP 534
            +PF  + CDH ET  RAY D  P+L  LAA LGK   +L I+DP++C G T   LA LGF  VH+   DFYEV++ G +P HDV VTNPP+SG H  + L+FCA  G KPW LL+PNYV  KDYY  S   R+   AT  F   PP
Sbjct:  297 YPFEVEECDHCETSERAYSDISPLLSALAAELGKPPEDLVIYDPYYCQGSTVGRLASLGFPRVHNRKEDFYEVVKNGNIPQHDVVVTNPPFSGEHMPKILKFCARQGAKPWFLLLPNYVYLKDYYEPSLGRRSGQGATRPFYLTPP 442          
BLAST of mRNA_P-wetherbeei_contig1853.1.2 vs. uniprot
Match: A0A2J8ADG8_9CHLO (Uncharacterized protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8ADG8_9CHLO)

HSP 1 Score: 150 bits (378), Expect = 1.670e-39
Identity = 70/123 (56.91%), Postives = 85/123 (69.11%), Query Frame = 1
Query:  103 PFPTDYCDHFETPLRAYRDAEPVLVGLAAALGKARAELQIWDPFFCAGRTPRLLAQLGFTSVHHENVDFYEVIRQGAVPPHDVFVTNPPYSGNHKRRCLEFCAASGKPWLLLMPNYVATKDYY 471
            PF  DY DHFET  RA +D  PVL  L+  L K  +EL ++DPF+CAG      A LG T   H N DFY+ +++GA+P +D+ VTNPPYSG+HK R LEFC  SGKPW LLMPNYVATK Y+
Sbjct:  119 PFAADYNDHFETDFRAVQDILPVLQQLSKRLCKPLSELAVYDPFYCAGGVRAHYAALGITKFIHRNRDFYDDVKKGALPSYDILVTNPPYSGDHKERILEFCLRSGKPWCLLMPNYVATKAYF 241          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1853.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7V7_ECTSI1.750e-5963.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0D9T2_MICPS8.110e-4658.27Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A6U0XTY6_9STRA3.490e-4460.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
C1FIX8_MICCC4.520e-4155.20Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A0A4D9CYX8_9STRA7.790e-4155.56Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S1IGA0_9EUGL8.900e-4154.92Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7R9V2F9_9CHLO2.420e-4053.03Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A7R9VAV0_9CHLO9.380e-4055.22Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
D7G4N4_ECTSI1.210e-3952.05Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2J8ADG8_9CHLO1.670e-3956.91Uncharacterized protein n=1 Tax=Tetrabaena sociali... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1853contigP-wetherbeei_contig1853:559..1867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G7V7
PFAMsKH_1
Model size800
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.76e-61
EggNOG OGs2BVHF@1|root,2S29B@2759|Eukaryota
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-06_000150.1
Cds size660
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186148.53982-CDS-P-wetherbeei_contig1853:558..8731683186148.53982-CDS-P-wetherbeei_contig1853:558..873Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1853 559..873 +
1683186148.5516863-CDS-P-wetherbeei_contig1853:1177..13741683186148.5516863-CDS-P-wetherbeei_contig1853:1177..1374Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1853 1178..1374 +
1683186148.5617442-CDS-P-wetherbeei_contig1853:1579..17271683186148.5617442-CDS-P-wetherbeei_contig1853:1579..1727Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1853 1580..1727 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186148.5698137-UTR-P-wetherbeei_contig1853:1727..18671683186148.5698137-UTR-P-wetherbeei_contig1853:1727..1867Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1853 1728..1867 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1853.1.2prot_P-wetherbeei_contig1853.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1853 559..1727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1853.1.2

>prot_P-wetherbeei_contig1853.1.2 ID=prot_P-wetherbeei_contig1853.1.2|Name=mRNA_P-wetherbeei_contig1853.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=220bp
GIGGGGSGWGISRSTAGKKRSKSSSGGPGDGPAHPFPTDYCDHFETPLRA
YRDAEPVLVGLAAALGKARAELQIWDPFFCAGRTPRLLAQLGFTSVHHEN
VDFYEVIRQGAVPPHDVFVTNPPYSGNHKRRCLEFCAASGKPWLLLMPNY
VATKDYYRSSALTRTPASATGRFTWCPPCATTLTTRRGPAMKSPHLHPCG
LSSLAATPTPSGGRHRREA*
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mRNA from alignment at P-wetherbeei_contig1853:559..1867+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1853.1.2 ID=mRNA_P-wetherbeei_contig1853.1.2|Name=mRNA_P-wetherbeei_contig1853.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1309bp|location=Sequence derived from alignment at P-wetherbeei_contig1853:559..1867+ (Phaeothamnion wetherbeei SAG_119_79)
GGCATCGGCGGCGGCGGTAGCGGATGGGGAATCAGCAGAAGCACAGCCGG CAAGAAACGCAGCAAGAGCAGCAGCGGTGGCCCCGGCGACGGCCCGGCCC ACCCGTTCCCGACCGACTACTGTGACCACTTTGAGACGCCACTCCGCGCC TACCGCGACGCCGAACCCGTTCTGGTGGGCCTGGCGGCCGCCCTGGGCAA GGCCCGTGCCGAGCTCCAGATATGGGACCCGTTTTTCTGCGCTGGAAGGA CGCCGCGGCTGCTGGCGCAGCTGGGCTTCACCAGCGTGCACCACGAGAAC GTCGACTTTTACGAGGTGAAAATACGGAGAGAAGTTGATGGCTTATTTGG CTCGAGGACTTTTGGACTGGAGTGCGTTTTGCCAACGAAGAGGGCGAAAA ACGCGCGCCTTTTCCAATATTTAGAAATCAAGGAGAACTGTTCGTATCAG GCGCTAAAAAATGTCACTGAATCTTGAGCTTGGGGGCTTTGTGAGTCGAA GAACGGGAGGGGCATGCGTTGCCGAAAAAAGCTGCTTCAATCAACCTTCG AACGCCTCAAAATTGATAAGATTATTTCGCCTAACCGTGCAGACCACATT TACAACGACGGCAAAACAGGTGATCCGACAAGGCGCCGTGCCGCCGCACG ACGTCTTTGTGACCAACCCGCCCTACTCGGGCAACCACAAGCGGCGCTGC CTCGAGTTCTGTGCGGCGTCGGGCAAGCCGTGGCTGCTGCTCATGCCCAA CTACGTCGCCACGAAGGACTACTACCGGAGCAGCGCCTTAACGCGGACGC CGGCATCGGCGACCGGGTCGGCGGCATCGGCGGCGGGGTCGGCATCGGCG TCGGCGGCGTCGGCCGTGCAAGCGGCGGCAGTGAAGCGAAGGATGGTTGG CGGCGGCGGCTGTGGCGGTGGGAGCGCCGCCCCAGTGTCTCCGCAAGGGC CGTCAGAAGCGGCAGTAGCAGCGCGGGCGACGACTGGGGCAGTGGCGGCT ACGCCACTACGGCAGATGGAGCCGTTTTACGTGGTGCCCACCGTGCGCTA CGACTTTGACCACCCGGCGGGGACCGGCCATGAAGTCTCCCCATTTGCAT CCATGTGGTTTGTCCAGCCTGGCCGCCACGCCGACGCCGTCTGGCGGTCG GCATCGACGCGAAGCTTAGGCGGCGGCGGCGGCAGCAGCAGCGATGGGGC GGCGTTCTTTCGGACGCTGCGGGATTTGGAGAGCCGAGCACTTGTGCCGA CGATGCGGCGGGGCAACCCAAAGCAGCGAAAGCGGGCGCGACAGGCCGCT GCAATGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1853:559..1867+

>mRNA_P-wetherbeei_contig1853.1.2 ID=mRNA_P-wetherbeei_contig1853.1.2|Name=mRNA_P-wetherbeei_contig1853.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=660bp|location=Sequence derived from alignment at P-wetherbeei_contig1853:559..1867+ (Phaeothamnion wetherbeei SAG_119_79)
GGCATCGGCGGCGGCGGTAGCGGATGGGGAATCAGCAGAAGCACAGCCGG
CAAGAAACGCAGCAAGAGCAGCAGCGGTGGCCCCGGCGACGGCCCGGCCC
ACCCGTTCCCGACCGACTACTGTGACCACTTTGAGACGCCACTCCGCGCC
TACCGCGACGCCGAACCCGTTCTGGTGGGCCTGGCGGCCGCCCTGGGCAA
GGCCCGTGCCGAGCTCCAGATATGGGACCCGTTTTTCTGCGCTGGAAGGA
CGCCGCGGCTGCTGGCGCAGCTGGGCTTCACCAGCGTGCACCACGAGAAC
GTCGACTTTTACGAGGTGATCCGACAAGGCGCCGTGCCGCCGCACGACGT
CTTTGTGACCAACCCGCCCTACTCGGGCAACCACAAGCGGCGCTGCCTCG
AGTTCTGTGCGGCGTCGGGCAAGCCGTGGCTGCTGCTCATGCCCAACTAC
GTCGCCACGAAGGACTACTACCGGAGCAGCGCCTTAACGCGGACGCCGGC
ATCGGCGACCGGCCGTTTTACGTGGTGCCCACCGTGCGCTACGACTTTGA
CCACCCGGCGGGGACCGGCCATGAAGTCTCCCCATTTGCATCCATGTGGT
TTGTCCAGCCTGGCCGCCACGCCGACGCCGTCTGGCGGTCGGCATCGACG
CGAAGCTTAG
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