mRNA_P-wetherbeei_contig1851.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1851.1.2
Unique NamemRNA_P-wetherbeei_contig1851.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1851.1.2 vs. uniprot
Match: D7G6U0_ECTSI (REJ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U0_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 2.010e-18
Identity = 49/107 (45.79%), Postives = 78/107 (72.90%), Query Frame = 2 
Query:   59 QDLFMFTPIRLFLVFMFVPSLMRHRLRPDMFTRIPRYAASVQVARQRPDLQVSQLILEGRIPRGSEYAQYIPPAATGTG---CLSGFMVAAAFTLMALLFALPEEAQ 370
            +D+F+  P++L  V++F+PSLMRHR+R DMF RIPR+A SVQVAR+ P+++VS +IL+GRIP G+E+ ++IP     +    C++G +    FT++A++  LP+  Q
Sbjct: 1797 EDIFLLVPLKLAFVYLFLPSLMRHRMRSDMFKRIPRHATSVQVARRHPNMEVSGMILQGRIPHGNEFEKFIPLFTARSRWYTCMTGLV----FTVLAIIMLLPDTLQ 1899
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1851.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6U0_ECTSI2.010e-1845.79REJ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1851contigP-wetherbeei_contig1851:735..2935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1314
Hectar predicted targeting categoryother localisation
Exons4
Cds size1002
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1851.1.2prot_P-wetherbeei_contig1851.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1851 996..2884 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186148.107706-UTR-P-wetherbeei_contig1851:734..9951683186148.107706-UTR-P-wetherbeei_contig1851:734..995Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1851 735..995 -
1683186148.153989-UTR-P-wetherbeei_contig1851:2884..29351683186148.153989-UTR-P-wetherbeei_contig1851:2884..2935Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1851 2885..2935 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186148.1174815-CDS-P-wetherbeei_contig1851:995..15221683186148.1174815-CDS-P-wetherbeei_contig1851:995..1522Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1851 996..1522 -
1683186148.1266153-CDS-P-wetherbeei_contig1851:1779..21211683186148.1266153-CDS-P-wetherbeei_contig1851:1779..2121Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1851 1780..2121 -
1683186148.1362433-CDS-P-wetherbeei_contig1851:2355..24521683186148.1362433-CDS-P-wetherbeei_contig1851:2355..2452Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1851 2356..2452 -
1683186148.1450794-CDS-P-wetherbeei_contig1851:2848..28841683186148.1450794-CDS-P-wetherbeei_contig1851:2848..2884Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1851 2849..2884 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1851.1.2

>prot_P-wetherbeei_contig1851.1.2 ID=prot_P-wetherbeei_contig1851.1.2|Name=mRNA_P-wetherbeei_contig1851.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=334bp
MLSGPLHVHAHPALPCVHVCAEPDAAPPPARHVHQNTPLRRVGPGGTAAA
RLASQPANSGGAHPAGQRVRAVHPASGDRYRLPVRVYGGRGLHADGAALR
VARGGPGRRLGHCYRLCRRRCPDRRPSYLHGGGVAAGCGDCRRHPLRHRR
DFVAAPKAGRGGGQGPQGRGGGVDAAGALPGCRVRRRGRDRGGAAAATAA
AAGRCRAVAARVNGRRRQWRRRRQGRTNFRPLGDGGAHRNRAAVTSDEEL
RRLPASLTRVACRAGGRRRRSDGNGRWQRLRAGMAGEIVVVARREPDLLL
RWGKREISFIKRCGFPYICGRRGFSPERDGHLA*
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mRNA from alignment at P-wetherbeei_contig1851:735..2935-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1851.1.2 ID=mRNA_P-wetherbeei_contig1851.1.2|Name=mRNA_P-wetherbeei_contig1851.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2201bp|location=Sequence derived from alignment at P-wetherbeei_contig1851:735..2935- (Phaeothamnion wetherbeei SAG_119_79)
TCTTACCCCTGCCGCGATTGTTGTGGCGGAATTTTGCTGGATCCTGGGTG
GATGCTGTCAGGACCTCTTCATGTTCACGCCCATCCGGTAAGTGGCTAGT
GTGTGTCGCCGAATTTTCCTCTCTCCTCGCGTTCGTTTCCCAGCCCCGTT
ACCACACTGCCGCCGCTGTGATTGCCACTGCCACTAACCCCAACCCAAAC
ATCACCACCACCACTCAAGTTCTCCGACGCCACCCACGGCCAATTTTGCT
GCCGTCGCCACCGCCACCACCTCTGCCATCGCGGCTGCCACCGCTGTCGT
CCCTTTCGCCGCTGTCACCGCTGCTGGTATCGCCGCTGTCACCGCTCCCG
ATATCGCCGCTGTCACCACTGCCGATATCGGCGCACGCCGCCGCTGTCGT
TGCGCGCCGCCGCTGCCGCCATCATCGCCACCGCCGTTTCGCGCGCCTTT
TCATATGGACCATCCCACCTTCGCTCCCTCCAGGCTCTTCCTTGTGTTCA
TGTTTGTGCCGAGCCTGATGCGGCACCGCCTCCGGCCCGACATGTTCACC
AGAATACCCCGCTACGCCGCGTCGGTCCAGGTGCGCCTCAAAACCAGAGA
ATGGGTGACATGAATGGCAAACTTTGTTCGTTTTCGAGCTCCTTCCTCCT
ATTTTTCGCTGTTTCGGAACATCGCGCTCTGCACAGTTTTCGAACAGTGA
ACGTGCTACCGGGCGCTCCCGTGGTAATAGTGCGCTTCGCCGGCTCTAAC
CAGTTTATTGTTCTGTTTTCTTCTGTCCTGCTCAACGGAAACCAACCGAA
ACTGCGGAAAGCAGGTGGCACGGCAGCGGCCCGACTTGCAAGTCAGCCAG
CTAATTCTGGAGGGGCGCATCCCGCGGGGCAGCGAGTACGCGCAGTACAT
CCCGCCAGCGGCGACAGGTACCGGCTGCCTGTCCGGGTTTATGGTGGCCG
CGGCCTTCACGCTGATGGCGCTGCTCTTCGCGTTGCCAGAGGAGGCCCAG
GGCGCCGTCTTGGACATTGTTATCGCCTTTGCCGGCGGCGTTGCCCTGAT
CGGCGCCCATCGTATCTACATGGCGGCGGAGTGGCAGCTGGCTGTGGCGA
TTGTCGTCGGCATCCTCTTCGCCATCGCCGTGATTTCGTGGCAGCACCTA
AAGCAGGTGGAGTTCTGCCACGTGATACCATCGCCGCTGTTTTTGCGCGC
TCTCTAACACTGCCACTGTGTCAATGCTGCCGCTACTACTGCGATCACAA
CCGTTACTGCCGCCACCGCCGCCGCCGCTGCAGCCACGACATCAGACATG
ACGTCCGCCTGAACAGTTCAGCACCGCAATCATCGCTCACACCGTTTCCG
ACGCATCTCTCCTCGTCTTACCTTCGGTTCTCTTTTTGCGAAAACTCTGG
AATCTGTCGGCAGGTAGAGGTGGAGGACAGGGCCCGCAAGGCCGGGGCGG
CGGCGTCGATGCGGCGGGAGCTCTTCCCGGGTGCCGAGTACGACGGCGAG
GAAGGGACCGCGGGGGAGCAGCCGCCGCCACTGCGGCTGCCGCCGGCAGG
TGCCGGGCTGTCGCTGCGCGGGTCAACGGGCGGCGGCGGCAGTGGCGGCG
ACGACGCCAGGGACGGACAAACTTCCGCCCTTTGGGAGATGGAGGAGCTC
ACAGGAACCGAGCTGCCGTAACCAGTGATGAAGAGCTGCGTCGCTTACCC
GCGTCGCTTACCCGCGTCGCTTGCCGTGCCGGCGGAAGGCGACGGCGGTC
GGATGGCAACGGCCGATGGCAGCGACTGCGTGCGGGTATGGCGGGGGAGA
TAGTAGTGGTGGCGCGACGCGAGCCAGATCTGTTGTTGAGGTGGGGGAAG
CGGGAAATTTCTTTTATTAAGCGTTGCGGTTTTCCTTATATCTGTGGCCG
CCGGGGGTTTTCGCCTGAAAGGGACGGCCACTTGGCTTAGATTTGGCGCC
CATAAAGACAGCGCGACGGCAGCTTATGGGGCTAGCGGGTGGCAGGCTAC
GGATGGACGGACCGGCCGGATGCTGCATGCATACGATCCGAAGGGGTCAA
GGGGTCGAGGGTAGACGGCATATCCAATTATATGGGAAGTGTTTCCTGCC
AGGATTGGTTCTAGCGCAATTGGGATGAAGTTGGGGAAAAACGTGCGTAG
TTGATGGGATTTGAGATCTAGCCGTAATGAACTGATCCTTTTGACTTGAC
G
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1851:735..2935-

>mRNA_P-wetherbeei_contig1851.1.2 ID=mRNA_P-wetherbeei_contig1851.1.2|Name=mRNA_P-wetherbeei_contig1851.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1002bp|location=Sequence derived from alignment at P-wetherbeei_contig1851:735..2935- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGTCAGGACCTCTTCATGTTCACGCCCATCCGGCTCTTCCTTGTGT
TCATGTTTGTGCCGAGCCTGATGCGGCACCGCCTCCGGCCCGACATGTTC
ACCAGAATACCCCGCTACGCCGCGTCGGTCCAGGTGGCACGGCAGCGGCC
CGACTTGCAAGTCAGCCAGCTAATTCTGGAGGGGCGCATCCCGCGGGGCA
GCGAGTACGCGCAGTACATCCCGCCAGCGGCGACAGGTACCGGCTGCCTG
TCCGGGTTTATGGTGGCCGCGGCCTTCACGCTGATGGCGCTGCTCTTCGC
GTTGCCAGAGGAGGCCCAGGGCGCCGTCTTGGACATTGTTATCGCCTTTG
CCGGCGGCGTTGCCCTGATCGGCGCCCATCGTATCTACATGGCGGCGGAG
TGGCAGCTGGCTGTGGCGATTGTCGTCGGCATCCTCTTCGCCATCGCCGT
GATTTCGTGGCAGCACCTAAAGCAGGTAGAGGTGGAGGACAGGGCCCGCA
AGGCCGGGGCGGCGGCGTCGATGCGGCGGGAGCTCTTCCCGGGTGCCGAG
TACGACGGCGAGGAAGGGACCGCGGGGGAGCAGCCGCCGCCACTGCGGCT
GCCGCCGGCAGGTGCCGGGCTGTCGCTGCGCGGGTCAACGGGCGGCGGCG
GCAGTGGCGGCGACGACGCCAGGGACGGACAAACTTCCGCCCTTTGGGAG
ATGGAGGAGCTCACAGGAACCGAGCTGCCGTAACCAGTGATGAAGAGCTG
CGTCGCTTACCCGCGTCGCTTACCCGCGTCGCTTGCCGTGCCGGCGGAAG
GCGACGGCGGTCGGATGGCAACGGCCGATGGCAGCGACTGCGTGCGGGTA
TGGCGGGGGAGATAGTAGTGGTGGCGCGACGCGAGCCAGATCTGTTGTTG
AGGTGGGGGAAGCGGGAAATTTCTTTTATTAAGCGTTGCGGTTTTCCTTA
TATCTGTGGCCGCCGGGGGTTTTCGCCTGAAAGGGACGGCCACTTGGCTT
AG
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