mRNA_P-wetherbeei_contig18499.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18499.1.1
Unique NamemRNA_P-wetherbeei_contig18499.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18499.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18499contigP-wetherbeei_contig18499:2..1074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1015
Hectar predicted targeting categoryother localisation
Exons2
Cds size609
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186147.9834676-UTR-P-wetherbeei_contig18499:1..3181683186147.9834676-UTR-P-wetherbeei_contig18499:1..318Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18499 2..318 -
1683186148.0124235-UTR-P-wetherbeei_contig18499:985..10741683186148.0124235-UTR-P-wetherbeei_contig18499:985..1074Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18499 986..1074 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186147.9938388-CDS-P-wetherbeei_contig18499:318..6841683186147.9938388-CDS-P-wetherbeei_contig18499:318..684Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18499 319..684 -
1683186148.0033185-CDS-P-wetherbeei_contig18499:742..9851683186148.0033185-CDS-P-wetherbeei_contig18499:742..985Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18499 743..985 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18499.1.1prot_P-wetherbeei_contig18499.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18499 319..985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18499.1.1

>prot_P-wetherbeei_contig18499.1.1 ID=prot_P-wetherbeei_contig18499.1.1|Name=mRNA_P-wetherbeei_contig18499.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=203bp
MAEPLVWDCVRPVVAAAADATTAVIDEDDGEGGDAAERDDGSGGGQRADG
AIAAAAAAAAAAAAVANDDGGEGNGGDGISDRGTGVWTLPPRPPVHRQSA
AEVMMTSSLRPLTSPSASASSTPGRRTTTPAAATKRTAEAAVLQVAAVGK
ALTTTVAAAAAAARTAKGAAAAAAAARTAKGAAATTTTLEQRASVAVWRL
AP*
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mRNA from alignment at P-wetherbeei_contig18499:2..1074-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18499.1.1 ID=mRNA_P-wetherbeei_contig18499.1.1|Name=mRNA_P-wetherbeei_contig18499.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1073bp|location=Sequence derived from alignment at P-wetherbeei_contig18499:2..1074- (Phaeothamnion wetherbeei SAG_119_79)
AGAATGAAGATGGCAGCCCAGACGAGGCCCCCGACGAGATCCGAGGCGGC
TTCGACACAGTCGTCGCCCTCGGGGCCTACACGACGCAGATGGCTGAACC
GCTGGTGTGGGATTGCGTGCGTCCGGTCGTCGCCGCCGCCGCCGATGCCA
CCACGGCCGTCATCGACGAAGACGACGGGGAGGGGGGCGATGCCGCAGAG
CGAGACGACGGCAGCGGCGGCGGCCAGCGTGCTGATGGAGCCATCGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCAGCTGCCGTCGCAAACGATGATGGAG
GTGAGGGCAACGGAGGCGACGGTATCAGCGACCTACGCGCCAATGATGGC
GACGGTGGCGGCGGCGGTGGTAGCGAAGGCGGTGGCTCGCAGGGGAACTG
GGGTGTGGACTCTGCCGCCAAGGCCGCCAGTGCACCGGCAAAGCGCAGCA
GAGGTGATGATGACGTCGAGTCTGAGGCCTCTCACATCGCCAAGCGCCTC
TGCGTCATCGACCCCGGGGAGGAGAACGACGACGCCGGCGGCGGCGACGA
AGAGGACGGCGGAGGCAGCAGTGCTGCAGGTGGCGGCGGTTGGGAAGGCA
TTGACGACGACGGTGGCGGCGGCAGCAGCGGCGGCGAGGACAGCTAAGGG
GGCAGCGGCGGCAGCAGCGGCGGCGAGGACAGCCAAGGGGGCGGCGGCGA
CGACGACGACGCTTGAGCAGCGAGCGTCTGTGGCGGTGTGGCGACTCGCC
CCATGATGTTGCCAATTGGCAATCTACAATCTTGATGGCAGCATGGCACA
CGACGTCTGCAGGCAGTTGCAGCGCGCCTCTGCCGGTCTCCTGTTTCACA
AGCGCGATTCAGACGAGTCTTGGGGCGGCAGCGGCTCTCCTTGAACGATT
TAATGCCCCTCTGCTGCAAAACCAACCATCATCAAGGGGAAGGAAGTGGG
AGGGTAGTTGGGCGGGTTCTGTATAGACATATTACAGAGCGAAATCTGGG
TTGGGGGGCCGGTGGAAAAGGCGACTGCTGACACCAGGCGTTGGGGGGTG
TTACATATCGAGGGCGGCGCCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18499:2..1074-

>mRNA_P-wetherbeei_contig18499.1.1 ID=mRNA_P-wetherbeei_contig18499.1.1|Name=mRNA_P-wetherbeei_contig18499.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=609bp|location=Sequence derived from alignment at P-wetherbeei_contig18499:2..1074- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGAACCGCTGGTGTGGGATTGCGTGCGTCCGGTCGTCGCCGCCGC
CGCCGATGCCACCACGGCCGTCATCGACGAAGACGACGGGGAGGGGGGCG
ATGCCGCAGAGCGAGACGACGGCAGCGGCGGCGGCCAGCGTGCTGATGGA
GCCATCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCAGCTGCCGTCGCAAA
CGATGATGGAGGTGAGGGCAACGGAGGCGACGGTATCAGCGACAGGGGAA
CTGGGGTGTGGACTCTGCCGCCAAGGCCGCCAGTGCACCGGCAAAGCGCA
GCAGAGGTGATGATGACGTCGAGTCTGAGGCCTCTCACATCGCCAAGCGC
CTCTGCGTCATCGACCCCGGGGAGGAGAACGACGACGCCGGCGGCGGCGA
CGAAGAGGACGGCGGAGGCAGCAGTGCTGCAGGTGGCGGCGGTTGGGAAG
GCATTGACGACGACGGTGGCGGCGGCAGCAGCGGCGGCGAGGACAGCTAA
GGGGGCAGCGGCGGCAGCAGCGGCGGCGAGGACAGCCAAGGGGGCGGCGG
CGACGACGACGACGCTTGAGCAGCGAGCGTCTGTGGCGGTGTGGCGACTC
GCCCCATGA
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