mRNA_P-wetherbeei_contig18485.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig18485.1.1 vs. uniprot
Match: UPI0015D4CCD2 (branched-chain amino acid ABC transporter permease n=1 Tax=Azospirillum oleiclasticum TaxID=2735135 RepID=UPI0015D4CCD2) HSP 1 Score: 193 bits (491), Expect = 6.540e-59 Identity = 98/157 (62.42%), Postives = 125/157 (79.62%), Query Frame = 1
Query: 4 FGNIVTDYRLFIIAFGVALSAGLFFAIEKTRIGMIVRAASSNSVMASCLGIDVARLRTVVFMVGTALAAVGGAVAGPLLPLKLGMGSTIIIDCFVVVVIGGLGNIRGAIIGALIIGMVRALGQQFASDWINMLTYLLLLVTLAVRPEGLFNRRGREA 474
FG+ V+ YRLF+I FG+A+S LF +E++ +G VRA +N MA+C+GIDV R+RT VF +G ALA VGG VAGPLLP++L MG TIIIDCFVVV+IGGLGNIRGA++GAL++GM RA GQ +A DWI++ TY LL+ TL +RP+GLFNRR R A
Sbjct: 129 FGSQVSLYRLFVIGFGLAVSLALFLVLERSPLGTAVRACQANGGMAACVGIDVGRVRTAVFAIGAALAGVGGTVAGPLLPIQLQMGFTIIIDCFVVVIIGGLGNIRGAVLGALLVGMTRAYGQAYAPDWIDVATYTLLIATLLLRPQGLFNRRERLA 285
BLAST of mRNA_P-wetherbeei_contig18485.1.1 vs. uniprot
Match: A0A1Y5RVW1_9PROT (High-affinity branched-chain amino acid transport system permease protein LivH n=1 Tax=Oceanibacterium hippocampi TaxID=745714 RepID=A0A1Y5RVW1_9PROT) HSP 1 Score: 191 bits (486), Expect = 3.720e-58 Identity = 95/158 (60.13%), Postives = 125/158 (79.11%), Query Frame = 1
Query: 1 VFGNIVTDYRLFIIAFGVALSAGLFFAIEKTRIGMIVRAASSNSVMASCLGIDVARLRTVVFMVGTALAAVGGAVAGPLLPLKLGMGSTIIIDCFVVVVIGGLGNIRGAIIGALIIGMVRALGQQFASDWINMLTYLLLLVTLAVRPEGLFNRRGREA 474
+ G+ V YRLFII FG ++AGLFF +E++R GM++RAAS + M LGI V+R+RT VF G+ LAA+GG VA PLLP++LGMG ++IIDCF+VVVIGGLGNIRGA++GAL+IGM RALG +A W+ LT++LL+ TL +RPEGLF+R+GR A
Sbjct: 128 ILGSQVPTYRLFIIGFGALIAAGLFFMLERSRYGMVIRAASGDPEMVQTLGISVSRIRTFVFAFGSGLAALGGVVAAPLLPIELGMGFSVIIDCFIVVVIGGLGNIRGAVLGALLIGMTRALGYTYAPSWVEFLTFVLLIATLVLRPEGLFSRKGRAA 285
BLAST of mRNA_P-wetherbeei_contig18485.1.1 vs. uniprot
Match: A0A418V1I1_RHOPL (Branched-chain amino acid ABC transporter permease n=1 Tax=Rhodopseudomonas palustris TaxID=1076 RepID=A0A418V1I1_RHOPL) HSP 1 Score: 185 bits (470), Expect = 9.700e-56 Identity = 90/157 (57.32%), Postives = 128/157 (81.53%), Query Frame = 1
Query: 4 FGNIVTDYRLFIIAFGVALSAGLFFAIEKTRIGMIVRAASSNSVMASCLGIDVARLRTVVFMVGTALAAVGGAVAGPLLPLKLGMGSTIIIDCFVVVVIGGLGNIRGAIIGALIIGMVRALGQQFASDWINMLTYLLLLVTLAVRPEGLFNRRGREA 474
FG ++ YRLF++ FG A+ LFF IE+T++G+++RA+S+N+ MA LG+DV R+RT +F +G ALA V GA+AGP+LP++L MG +II+DCF+VV+IGGLGNIRGA++GAL+IGM RA GQQ+A++WI++ TY +L+VTL VRP+GLF R R +
Sbjct: 129 FGTDISKYRLFVVLFGAAMVVLLFFGIERTKLGLVLRASSNNAGMAEMLGVDVGRVRTALFALGAALAGVAGAIAGPMLPIQLQMGFSIILDCFIVVIIGGLGNIRGAVVGALLIGMTRAYGQQYAAEWIDIATYGVLVVTLLVRPQGLFGIRLRTS 285
BLAST of mRNA_P-wetherbeei_contig18485.1.1 vs. uniprot
Match: A0A533J7S7_9BRAD (Branched-chain amino acid ABC transporter permease n=5 Tax=Bradyrhizobium TaxID=374 RepID=A0A533J7S7_9BRAD) HSP 1 Score: 185 bits (469), Expect = 1.370e-55 Identity = 90/157 (57.32%), Postives = 126/157 (80.25%), Query Frame = 1
Query: 4 FGNIVTDYRLFIIAFGVALSAGLFFAIEKTRIGMIVRAASSNSVMASCLGIDVARLRTVVFMVGTALAAVGGAVAGPLLPLKLGMGSTIIIDCFVVVVIGGLGNIRGAIIGALIIGMVRALGQQFASDWINMLTYLLLLVTLAVRPEGLFNRRGREA 474
FG+ + YRLFII FG +S LF ++++++GM++RAASS+S MA LG+DVAR+RT VF +G+ LAA+GG VA PL+P++LGMG ++IIDCFVVV+IGGLGNI+GAI AL++GM RA G +A +W+ ++T++LL+VTL RP GLF+R+GR A
Sbjct: 129 FGSQIPSYRLFIIGFGALVSVLLFLLLDRSKLGMVIRAASSDSEMAQTLGVDVARVRTAVFALGSGLAALGGVVAAPLVPIELGMGFSVIIDCFVVVIIGGLGNIKGAIFAALLLGMARAAGFTYAPEWVELITFVLLIVTLLTRPSGLFSRKGRAA 285
BLAST of mRNA_P-wetherbeei_contig18485.1.1 vs. uniprot
Match: A0A2S0NE28_9HYPH (Branched-chain amino acid ABC transporter permease n=1 Tax=Phreatobacter cathodiphilus TaxID=1868589 RepID=A0A2S0NE28_9HYPH) HSP 1 Score: 184 bits (468), Expect = 1.940e-55 Identity = 90/157 (57.32%), Postives = 124/157 (78.98%), Query Frame = 1
Query: 4 FGNIVTDYRLFIIAFGVALSAGLFFAIEKTRIGMIVRAASSNSVMASCLGIDVARLRTVVFMVGTALAAVGGAVAGPLLPLKLGMGSTIIIDCFVVVVIGGLGNIRGAIIGALIIGMVRALGQQFASDWINMLTYLLLLVTLAVRPEGLFNRRGREA 474
FG+ + YRLFII FG +S LF +E++R+GM++RAASS++ MA LGIDVA++RT VF +G LAA+GG VA PL+P++LGMG ++IIDCFVVV+IGGLGNIRGAI+ AL++GM RA G +A +W+ ++T++LL+ TL RP G F+R+GR A
Sbjct: 129 FGSQIPSYRLFIIGFGATVSLALFLLLERSRLGMVIRAASSDADMAQTLGIDVAKVRTAVFALGAGLAALGGVVAAPLVPIELGMGFSVIIDCFVVVIIGGLGNIRGAILAALLLGMARAAGFTYAPEWVELITFVLLIATLLTRPAGFFSRKGRAA 285
BLAST of mRNA_P-wetherbeei_contig18485.1.1 vs. uniprot
Match: A0A0A1PRN8_9BACT (High-affinity branched-chain amino acid transport system permease protein LivH n=2 Tax=Bacteria TaxID=2 RepID=A0A0A1PRN8_9BACT) HSP 1 Score: 184 bits (466), Expect = 3.890e-55 Identity = 91/157 (57.96%), Postives = 127/157 (80.89%), Query Frame = 1
Query: 4 FGNIVTDYRLFIIAFGVALSAGLFFAIEKTRIGMIVRAASSNSVMASCLGIDVARLRTVVFMVGTALAAVGGAVAGPLLPLKLGMGSTIIIDCFVVVVIGGLGNIRGAIIGALIIGMVRALGQQFASDWINMLTYLLLLVTLAVRPEGLFNRRGREA 474
FG+ + YRLFII FG A+SA LF IEK+R G+++RA SS+S MA LGI+V+R+RT VF +G LAA+GG +A PL+P++LGMG ++IIDCFVVV+IGGLG+IRGA+ AL++GM RA+G +A +W++++T++LL+VTL RP GLF+R+GR A
Sbjct: 129 FGSQIPSYRLFIIVFGAAVSALLFVVIEKSRYGVMIRATSSDSDMAETLGINVSRVRTAVFALGAGLAALGGVIAAPLVPIELGMGFSVIIDCFVVVIIGGLGSIRGAVFAALLLGMARAVGFTYAPEWVDLITFMLLIVTLLTRPAGLFSRKGRAA 285
BLAST of mRNA_P-wetherbeei_contig18485.1.1 vs. uniprot
Match: A0A2E2QQS3_9PROT (Branched-chain amino acid ABC transporter permease n=6 Tax=Sneathiella TaxID=510690 RepID=A0A2E2QQS3_9PROT) HSP 1 Score: 182 bits (461), Expect = 2.210e-54 Identity = 94/157 (59.87%), Postives = 122/157 (77.71%), Query Frame = 1
Query: 4 FGNIVTDYRLFIIAFGVALSAGLFFAIEKTRIGMIVRAASSNSVMASCLGIDVARLRTVVFMVGTALAAVGGAVAGPLLPLKLGMGSTIIIDCFVVVVIGGLGNIRGAIIGALIIGMVRALGQQFASDWINMLTYLLLLVTLAVRPEGLFNRRGREA 474
FG+ V YRLFII FGVA+SA LFF ++++R GMI+RAAS + M LGI+V+ +RT VF G LAA+GGA A PL P++LGMG IIID F+VV+IGGLGNIRGA++ AL+IGM RALG +A W++ LT++LL+ TL +RPEGLF+R+GR A
Sbjct: 129 FGSSVPSYRLFIIGFGVAVSAALFFMLDRSRYGMIIRAASGDPEMVRTLGINVSLVRTGVFSFGAGLAALGGAAAAPLFPIELGMGFNIIIDSFIVVIIGGLGNIRGAVMAALLIGMTRALGYSYAPSWVDFLTFILLIGTLILRPEGLFSRKGRTA 285
BLAST of mRNA_P-wetherbeei_contig18485.1.1 vs. uniprot
Match: A0A4Q3QMP5_9BURK (Branched-chain amino acid ABC transporter permease n=1 Tax=Comamonadaceae bacterium TaxID=1871071 RepID=A0A4Q3QMP5_9BURK) HSP 1 Score: 179 bits (454), Expect = 2.450e-53 Identity = 89/157 (56.69%), Postives = 126/157 (80.25%), Query Frame = 1
Query: 4 FGNIVTDYRLFIIAFGVALSAGLFFAIEKTRIGMIVRAASSNSVMASCLGIDVARLRTVVFMVGTALAAVGGAVAGPLLPLKLGMGSTIIIDCFVVVVIGGLGNIRGAIIGALIIGMVRALGQQFASDWINMLTYLLLLVTLAVRPEGLFNRRGREA 474
FG+ V+ YR+F+I G A A L IE++RIG+++R+ S++ +MA+ LG+ V R+RT VF VG ALA +GGA+AGP+LP++L MG TII+DCF+VV+IGGLGNIRGA++GAL+IGM RA GQQ+ +WI++LTY +L+ TL +RP+GLF+R+ R A
Sbjct: 128 FGSDVSRYRVFVIVVGAATMALLLLGIERSRIGLVIRSCSTHPLMAATLGVRVDRVRTGVFAVGAALAGLGGAMAGPMLPIQLQMGGTIILDCFIVVIIGGLGNIRGAVVGALMIGMTRAFGQQYLPEWIDILTYAVLIATLLLRPQGLFSRKERLA 284
BLAST of mRNA_P-wetherbeei_contig18485.1.1 vs. uniprot
Match: UPI0010409717 (branched-chain amino acid ABC transporter permease n=1 Tax=Paracoccus marinus TaxID=288426 RepID=UPI0010409717) HSP 1 Score: 179 bits (453), Expect = 3.560e-53 Identity = 86/157 (54.78%), Postives = 125/157 (79.62%), Query Frame = 1
Query: 4 FGNIVTDYRLFIIAFGVALSAGLFFAIEKTRIGMIVRAASSNSVMASCLGIDVARLRTVVFMVGTALAAVGGAVAGPLLPLKLGMGSTIIIDCFVVVVIGGLGNIRGAIIGALIIGMVRALGQQFASDWINMLTYLLLLVTLAVRPEGLFNRRGREA 474
FG+++ YRLF+I FG A+S LF +++++ G+++RAAS+++ MA LGIDV+R+RT VF +G LAA+GGAV PL+P++LGMG +IIIDCF+VV+IGGLGNIRGAI+ +L+IGM RA G +A++W+ ++T+ LL+ TL RP GLF+ +GR A
Sbjct: 129 FGSMIPSYRLFVIGFGAAVSLALFLLLDRSKWGIVIRAASADADMAQALGIDVSRVRTAVFALGAGLAAIGGAVTAPLVPIELGMGFSIIIDCFIVVIIGGLGNIRGAILASLLIGMARAAGYTYATEWVELITFALLIGTLMFRPAGLFSVKGRTA 285
BLAST of mRNA_P-wetherbeei_contig18485.1.1 vs. uniprot
Match: A0A853G8B4_9BURK (Branched-chain amino acid ABC transporter permease n=1 Tax=Alcaligenaceae bacterium TaxID=2021368 RepID=A0A853G8B4_9BURK) HSP 1 Score: 173 bits (439), Expect = 4.460e-51 Identity = 84/157 (53.50%), Postives = 122/157 (77.71%), Query Frame = 1
Query: 4 FGNIVTDYRLFIIAFGVALSAGLFFAIEKTRIGMIVRAASSNSVMASCLGIDVARLRTVVFMVGTALAAVGGAVAGPLLPLKLGMGSTIIIDCFVVVVIGGLGNIRGAIIGALIIGMVRALGQQFASDWINMLTYLLLLVTLAVRPEGLFNRRGREA 474
F ++ YRLF++ G +A L F +E+T++G++VRA S+NS+MA+ LGI V R R +VF +G ALA G + GP+LP++L MG++II+DCF+VV+IGGLGNIRGA+IGAL+IGM RA GQQ+ S+WI+++ Y +L+ TL +RP+GLF++R R A
Sbjct: 128 FSTELSRYRLFVVVVGATAAALLLFVVERTKLGLLVRACSANSMMAATLGIRVDRARALVFAIGAALAGFAGVITGPMLPIQLQMGNSIILDCFIVVIIGGLGNIRGAVIGALLIGMTRAYGQQYLSEWIDLIVYTVLISTLLLRPQGLFSKRERLA 284 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18485.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig18485.1.1 >prot_P-wetherbeei_contig18485.1.1 ID=prot_P-wetherbeei_contig18485.1.1|Name=mRNA_P-wetherbeei_contig18485.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=159bp VFGNIVTDYRLFIIAFGVALSAGLFFAIEKTRIGMIVRAASSNSVMASCLback to top mRNA from alignment at P-wetherbeei_contig18485:866..1342- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig18485.1.1 ID=mRNA_P-wetherbeei_contig18485.1.1|Name=mRNA_P-wetherbeei_contig18485.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig18485:866..1342- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig18485:866..1342- >mRNA_P-wetherbeei_contig18485.1.1 ID=mRNA_P-wetherbeei_contig18485.1.1|Name=mRNA_P-wetherbeei_contig18485.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig18485:866..1342- (Phaeothamnion wetherbeei SAG_119_79)back to top |