mRNA_P-wetherbeei_contig18484.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18484.2.1
Unique NamemRNA_P-wetherbeei_contig18484.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18484.2.1 vs. uniprot
Match: A0A7S3XWY9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWY9_HETAK)

HSP 1 Score: 144 bits (362), Expect = 5.220e-42
Identity = 66/89 (74.16%), Postives = 74/89 (83.15%), Query Frame = 1 
Query:   61 AMGAAGPGLPANFKGNYELYAVVTHKGREADGGHYMAWVRKE------ADKWFVFDDDSVSQVTTEEVMQLKGGGDWHMAYLAFYRYKN 309
            A GAAGPGLP +F+GNYEL+ VVTHKGREADGGHYM WV++E      +DKWFVFDD  VS+ T EEVM+LKGGGDWHMAYL FYRYKN
Sbjct:   65 AEGAAGPGLPGDFRGNYELFGVVTHKGREADGGHYMGWVKQEGGRGDPSDKWFVFDDADVSETTEEEVMKLKGGGDWHMAYLTFYRYKN 153
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BLAST of mRNA_P-wetherbeei_contig18484.2.1 vs. uniprot
Match: D7FPW5_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPW5_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 4.500e-37
Identity = 62/80 (77.50%), Postives = 68/80 (85.00%), Query Frame = 1 
Query:   67 GAAGPGLPANFKGNYELYAVVTHKGREADGGHYMAWVRKEADKWFVFDDDSVSQVTTEEVMQLKGGGDWHMAYLAFYRYK 306
            GAAGPGLPA+FKG YEL+AVVTHKGREADGGHYM WVR+E D W VFDD  VS   TE++M LKGGGDWHMAYL FYR+K
Sbjct:  558 GAAGPGLPADFKGTYELFAVVTHKGREADGGHYMGWVRQEGDDWLVFDDSDVSPCKTEDIMNLKGGGDWHMAYLTFYRFK 637
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BLAST of mRNA_P-wetherbeei_contig18484.2.1 vs. uniprot
Match: A0A5D6YB19_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB19_9STRA)

HSP 1 Score: 134 bits (338), Expect = 3.470e-35
Identity = 63/94 (67.02%), Postives = 73/94 (77.66%), Query Frame = 1 
Query:   28 AATAAAPTVSTAMGAAGPGLPANFKGNYELYAVVTHKGREADGGHYMAWVRKEADKWFVFDDDSVSQVTTEEVMQLKGGGDWHMAYLAFYRYKN 309
            AA AAA ++S    A G GLP +F+GNYELYA++THKGR AD GHYMAWVR E D WF +DDD VS   TE++ +LKGGGDWHMAYLAFYR KN
Sbjct:  406 AALAAAKSMSMGARAPGIGLPVDFQGNYELYAILTHKGRSADSGHYMAWVRHEGDDWFCYDDDDVSPCKTEDINKLKGGGDWHMAYLAFYRAKN 499
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BLAST of mRNA_P-wetherbeei_contig18484.2.1 vs. uniprot
Match: A0A7S1TQP1_9STRA (Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQP1_9STRA)

HSP 1 Score: 134 bits (336), Expect = 6.200e-35
Identity = 57/76 (75.00%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:   73 AGPGLPANFKGNYELYAVVTHKGREADGGHYMAWVRKEADKWFVFDDDSVSQVTTEEVMQLKGGGDWHMAYLAFYR 300
            AGPGLP +FKGNYEL+ VVTHKGREAD GHY+ WVR+E D+W VFDDD V +V TE ++ LKGGGDWHMAYLAFYR
Sbjct:  408 AGPGLPDDFKGNYELFGVVTHKGREADAGHYIGWVRQEGDQWLVFDDDHVEEVNTEAILNLKGGGDWHMAYLAFYR 483
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BLAST of mRNA_P-wetherbeei_contig18484.2.1 vs. uniprot
Match: M4BKS8_HYAAE (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BKS8_HYAAE)

HSP 1 Score: 134 bits (336), Expect = 6.640e-35
Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 1 
Query:   64 MGAAGPG--LPANFKGNYELYAVVTHKGREADGGHYMAWVRKEADKWFVFDDDSVSQVTTEEVMQLKGGGDWHMAYLAFYRYK 306
            MGA  PG  LPANF+GNYELYA++THKGR AD GHYMAWVR E D W+ +DDD VS   TE++M+LKGGGDWHMAYLAFYR K
Sbjct:  415 MGAKSPGIELPANFQGNYELYAILTHKGRSADSGHYMAWVRHEGDDWYCYDDDDVSPCKTEDIMKLKGGGDWHMAYLAFYRAK 497
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BLAST of mRNA_P-wetherbeei_contig18484.2.1 vs. uniprot
Match: A0A662Y598_9STRA (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y598_9STRA)

HSP 1 Score: 132 bits (331), Expect = 9.950e-35
Identity = 59/84 (70.24%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:   64 MGAAGPG--LPANFKGNYELYAVVTHKGREADGGHYMAWVRKEADKWFVFDDDSVSQVTTEEVMQLKGGGDWHMAYLAFYRYKN 309
            MGA  PG  LP +F+GNYELYA++THKGR AD GHYMAWVR + D WF +DDD VS   TE++M+LKGGGDWHMAYLAFYR KN
Sbjct:  323 MGAKSPGIELPIDFQGNYELYAILTHKGRSADSGHYMAWVRHKGDDWFCYDDDDVSPCKTEDIMKLKGGGDWHMAYLAFYRAKN 406
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BLAST of mRNA_P-wetherbeei_contig18484.2.1 vs. uniprot
Match: K3WGB7_GLOUD (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGB7_GLOUD)

HSP 1 Score: 132 bits (332), Expect = 2.430e-34
Identity = 60/87 (68.97%), Postives = 69/87 (79.31%), Query Frame = 1 
Query:   55 STAMGAAGPG--LPANFKGNYELYAVVTHKGREADGGHYMAWVRKEADKWFVFDDDSVSQVTTEEVMQLKGGGDWHMAYLAFYRYKN 309
            S +MGA  PG  LP +F+GNYELYA++THKGR AD GHYMAWVR E D WF +DDD VS   TE++ +LKGGGDWHMAYLAFYR KN
Sbjct:  410 SMSMGARSPGIGLPVDFQGNYELYAILTHKGRSADSGHYMAWVRHEGDDWFCYDDDDVSPCKTEDINKLKGGGDWHMAYLAFYRAKN 496
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BLAST of mRNA_P-wetherbeei_contig18484.2.1 vs. uniprot
Match: A0A8K1FF25_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FF25_PYTOL)

HSP 1 Score: 130 bits (327), Expect = 1.250e-33
Identity = 59/84 (70.24%), Postives = 67/84 (79.76%), Query Frame = 1 
Query:   64 MGAAGPGL--PANFKGNYELYAVVTHKGREADGGHYMAWVRKEADKWFVFDDDSVSQVTTEEVMQLKGGGDWHMAYLAFYRYKN 309
            MGA  PGL  P +F+GNYELYA++THKGR AD GHYMAWVR E D WF +DDD VS   TE++ +LKGGGDWHMAYLAFYR KN
Sbjct:  412 MGAKEPGLGLPHDFQGNYELYAILTHKGRSADSGHYMAWVRHEGDDWFCYDDDDVSPCKTEDIQKLKGGGDWHMAYLAFYRAKN 495
[Close]
BLAST of mRNA_P-wetherbeei_contig18484.2.1 vs. uniprot
Match: A0A662Y238_9STRA (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y238_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.300e-33
Identity = 59/84 (70.24%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:   64 MGAAGPG--LPANFKGNYELYAVVTHKGREADGGHYMAWVRKEADKWFVFDDDSVSQVTTEEVMQLKGGGDWHMAYLAFYRYKN 309
            MGA  PG  LP +F+GNYELYA++THKGR AD GHYMAWVR + D WF +DDD VS   TE++M+LKGGGDWHMAYLAFYR KN
Sbjct:  651 MGAKSPGIELPIDFQGNYELYAILTHKGRSADSGHYMAWVRHKGDDWFCYDDDDVSPCKTEDIMKLKGGGDWHMAYLAFYRAKN 734
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BLAST of mRNA_P-wetherbeei_contig18484.2.1 vs. uniprot
Match: A0A2D4C8B6_PYTIN (Multifunctional fusion protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C8B6_PYTIN)

HSP 1 Score: 132 bits (331), Expect = 1.450e-33
Identity = 59/84 (70.24%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:   64 MGAAGPG--LPANFKGNYELYAVVTHKGREADGGHYMAWVRKEADKWFVFDDDSVSQVTTEEVMQLKGGGDWHMAYLAFYRYKN 309
            MGA  PG  LPA+F+GNYELYA++THKGR AD GHYMAWVR + D WF +DDD VS   TE++ +LKGGGDWHMAYLAFYR KN
Sbjct:  864 MGAKSPGIGLPADFQGNYELYAILTHKGRSADSGHYMAWVRHKGDDWFCYDDDDVSPCKTEDIQKLKGGGDWHMAYLAFYRAKN 947
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18484.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XWY9_HETAK5.220e-4274.16Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7FPW5_ECTSI4.500e-3777.50Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ecto... [more]
A0A5D6YB19_9STRA3.470e-3567.02Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pyth... [more]
A0A7S1TQP1_9STRA6.200e-3575.00Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Phae... [more]
M4BKS8_HYAAE6.640e-3572.29Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Hyal... [more]
A0A662Y598_9STRA9.950e-3570.24Ubiquitin carboxyl-terminal hydrolase (Fragment) n... [more]
K3WGB7_GLOUD2.430e-3468.97Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Glob... [more]
A0A8K1FF25_PYTOL1.250e-3370.24Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662Y238_9STRA1.300e-3370.24Ubiquitin carboxyl-terminal hydrolase (Fragment) n... [more]
A0A2D4C8B6_PYTIN1.450e-3370.24Multifunctional fusion protein n=1 Tax=Pythium ins... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18484contigP-wetherbeei_contig18484:209..812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FPW5
PFAMsUCH
Model size312
Max annot lvl2759|Eukaryota
KEGG koko:K11843
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.38e-38
EggNOG OGsKOG1872@1|root,KOG1872@2759|Eukaryota
EC3.4.19.12
Descriptionnegative regulation of ER-associated ubiquitin-dependent protein catabolic process
Cds size312
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186147.394913-CDS-P-wetherbeei_contig18484:208..3651683186147.394913-CDS-P-wetherbeei_contig18484:208..365Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18484 209..365 +
1683186147.4056308-CDS-P-wetherbeei_contig18484:657..8121683186147.4056308-CDS-P-wetherbeei_contig18484:657..812Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18484 658..812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18484.2.1prot_P-wetherbeei_contig18484.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18484 209..812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18484.2.1

>prot_P-wetherbeei_contig18484.2.1 ID=prot_P-wetherbeei_contig18484.2.1|Name=mRNA_P-wetherbeei_contig18484.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp
MGDDAAAVPAATAAAPTVSTAMGAAGPGLPANFKGNYELYAVVTHKGREA
DGGHYMAWVRKEADKWFVFDDDSVSQVTTEEVMQLKGGGDWHMAYLAFYR
YKN*
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mRNA from alignment at P-wetherbeei_contig18484:209..812+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18484.2.1 ID=mRNA_P-wetherbeei_contig18484.2.1|Name=mRNA_P-wetherbeei_contig18484.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=604bp|location=Sequence derived from alignment at P-wetherbeei_contig18484:209..812+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGGACGACGCGGCGGCGGTGCCGGCGGCGACGGCGGCGGCGCCAAC
GGTGTCGACGGCGATGGGGGCGGCTGGGCCGGGCCTGCCAGCAAATTTCA
AGGGAAACTATGAGCTGTACGCCGTGGTTACGCACAAGGGGCGCGAGGCG
GATGGAGGTGCATCGAATTCTAACTTCGTCCGCTCCTTTGCATAATTTTT
GTCTTCTGTTTTCGTTGTAGCGCCATCCCGCAGGTTTTCCGCTGTATTCT
TGTCCTGCTGACAAGTTGGCATCCTATTCTTGCCTTGTTGAGCGTTTGGC
TTCAGAAGCAGGCGATGCTGACGGTCTTCCCCTTCTTGCGTCTTCTCACG
TGAACGGTTCTTAAAACAAAATTTGCTGCCGCATTACCCCCTCGCCTGCC
CACTTGACGTGCTTGCTACCTTGTGGTTTGTAATCTCCAAAATCCGCAGG
GCACTACATGGCGTGGGTGCGAAAAGAGGCGGACAAGTGGTTCGTCTTCG
ACGATGACTCGGTGTCTCAGGTGACCACGGAGGAGGTCATGCAGCTCAAG
GGCGGCGGTGACTGGCACATGGCCTACCTCGCCTTCTACCGCTACAAGAA
CTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18484:209..812+

>mRNA_P-wetherbeei_contig18484.2.1 ID=mRNA_P-wetherbeei_contig18484.2.1|Name=mRNA_P-wetherbeei_contig18484.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig18484:209..812+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGGACGACGCGGCGGCGGTGCCGGCGGCGACGGCGGCGGCGCCAAC
GGTGTCGACGGCGATGGGGGCGGCTGGGCCGGGCCTGCCAGCAAATTTCA
AGGGAAACTATGAGCTGTACGCCGTGGTTACGCACAAGGGGCGCGAGGCG
GATGGAGGGCACTACATGGCGTGGGTGCGAAAAGAGGCGGACAAGTGGTT
CGTCTTCGACGATGACTCGGTGTCTCAGGTGACCACGGAGGAGGTCATGC
AGCTCAAGGGCGGCGGTGACTGGCACATGGCCTACCTCGCCTTCTACCGC
TACAAGAACTAA
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