mRNA_P-wetherbeei_contig1848.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1848.4.1
Unique NamemRNA_P-wetherbeei_contig1848.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1848.4.1 vs. uniprot
Match: A0A6H5JDR2_9PHAE (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDR2_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 2.590e-46
Identity = 110/323 (34.06%), Postives = 159/323 (49.23%), Query Frame = 2
Query:  356 PLFLIIGVQ---KGGASELKFQLFQHPMVAGARS-EIHFFDRSDMAVTP------------GRMLRKSDVTRLLVTYSELLLPPKPTRAERLRREREDGGYVIDASPKYMYQMRTPYRVQKLLPHVRAVVLLRDPVERYFSSLAMYVC-----------RGFPRARFHTPGKLQEYLAAAAESYAPYKPACRGAGAEPERLRECEKKADLAEPLNRGLYADQLERWLYLFNASQIMVVDSAELFSDVAGVVGRVAEFGGLSRFEFTYDPEKHAPQERCSHTARSKYASLRSAIAASGEEKALRDFYRPHNERLFRLIGSDFGW 1243
            PL +IIG Q   KGG   L+  L  HP ++G R  E HFFD       P            G  L  S    +L  Y++  +       E +   + D    ++++P Y +    PYR++ +LP  R V++LRDP ERYFS L M +C               +  FH PG+++EYL     SY PY P CRG  A  + L  C K     +PL+RGLYADQLERW  ++  SQI+V++S+E+F +  G + +VA   GL    + YD         C       +A          +++ L+++YRPHNERL+RL+G +  W
Sbjct:  216 PLAIIIGTQASAKGGTQNLRSHLLTHPSLSGLRQKEAHFFDWFWFTSDPKSRHEWRGDGRGGAGLNSSAAGEVLSAYADRAM-------EAVDPRKRDTMATVESTPLYFFYPLAPYRMKMVLPAARLVLILRDPTERYFSHLRMMMCWTRDSETFDHLEKRQKTYFHIPGRVKEYLERGEASYKPYTPLCRGEEARAKDLLRCWKAMVTHDPLHRGLYADQLERWFRVYPRSQILVLESSEMFGNFTGTLDKVARHIGLPPHGYEYDSRHQHASAPCERNHPELFAEGGRYQKMLEDQRVLQEWYRPHNERLYRLLGREMPW 531          
BLAST of mRNA_P-wetherbeei_contig1848.4.1 vs. uniprot
Match: D7G9G8_ECTSI (Putative deacetylase sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G8_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 4.270e-45
Identity = 107/275 (38.91%), Postives = 146/275 (53.09%), Query Frame = 2
Query:  356 PLFLIIGVQKGGASELKFQLFQHPMVAGARSEIHFFDRSDMAVTP--------GRM--LRKSDVTRLLVTYSELLLP---PKPTRAERLRREREDGGYVIDASPKYMYQMRTPYRVQKLLPHVRAVVLLRDPVERYFSSLAMYVCRGFP-----------RARFHTPGKLQEYLAAAAESYAPYKPACRGAGAEPERLRECEKKADLAEPLNRGLYADQLERWLYLFNASQIMVVDSAELFSDVAGVVGRVAEFGGLSRFEFTYDPEKHAPQERC 1108
            PL  IIGVQKGG + L+  L  HP+V G  +E+HFFD+ D  + P        GR   L    + R+L  Y++  L    PK   A          G ++++SP+Y+     PYR++ +LP  + VV+LRDP +RYFS L M +C+  P              FH PG+ + Y+  A  +Y PY   CRG  A    L  C K      PL+RGLYADQLERW  +++ SQI+V+DSAE+F +    V  VAE+ GL   EF YD  KH  +  C
Sbjct:  133 PLITIIGVQKGGTTNLRRNLLTHPLVTGMPNEVHFFDQ-DPDIYPKLGHWQGDGREKELSPGAIGRILSEYAKTCLEEGKPKKKPAWHKNVAAMSSGVIVESSPRYILSPIAPYRMRMVLPRAKLVVVLRDPTDRYFSQLRMVMCKTEPDPGYMSLEEQISTHFHPPGQAKGYIKRAEAAYNPYGERCRGENATSADLWNCFKAMATHNPLHRGLYADQLERWFRVYDKSQILVIDSAEMFVNFTETVAVVAEWAGLPEHEFEYD--KHEFKGAC 404          
BLAST of mRNA_P-wetherbeei_contig1848.4.1 vs. uniprot
Match: D7FST9_ECTSI (Sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST9_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 6.970e-41
Identity = 113/327 (34.56%), Postives = 163/327 (49.85%), Query Frame = 2
Query:  224 ASPFPYKAEMFDAEDIGAAWKRMITNGNHT-PIPRATVGG----ATVTWPLFLIIGVQKGGASELKFQLFQHPMVAGARS-EIHFFDRSDMAVTP-------------GRMLRKSDVTRLLVTYSELLLPPKPTRAERLRREREDGGYVIDASPKYMYQMRTPYRVQKLLPHVRAVVLLRDPVERYFSSLAMYVC-----RGFPRAR------FHTPGKLQEYLAAAAESYAPYKPACRGAGAEPERLRECEKKADLAEPLNRGLYADQLERWLYLFNASQIMVVDSAELFSDVAGVVGRVAEFGGLSRFEFTYDPEKH---APQER 1105
            ++P P+    +++ +  A       +GN   P+P     G    A+ + PL +IIG QKGG   L+  L  HP ++G R  E HFFD       P             G  L  S    +L  Y++  +       + +   + D    +++SP Y++    PYR++ +LP  R V++LRDP ERYFS L M +C       F +        FH PG+++EYL     SY PY P CRG GA  + L  C K     +PL+RGLY DQLERWL ++  SQI+VV+S+E+F D  G + +VA   GL   +F+YD       AP ER
Sbjct:  227 SAPGPFSLRRYESFEAYAT--EQSASGNAILPVPIVRPPGKGPEASRSIPLAIIIGTQKGGTQNLRSHLLTHPSLSGLRQKEAHFFDWFWFPSDPNKKRHEWPGDGRGGAGLNPSAAGEVLSAYADRAM-------KAVDPSKRDTMATVESSPLYLFFPLAPYRMRMVLPAARLVLILRDPTERYFSHLRMMMCGTRDGETFDQLEERLETYFHIPGRVKEYLEQGEASYKPYTPLCRGEGARAKDLLRCWKAMVTHDPLHRGLYVDQLERWLRVYPRSQILVVESSEMFGDFTGTLNQVARHIGLPPHDFSYDSRHQHASAPCER 544          
BLAST of mRNA_P-wetherbeei_contig1848.4.1 vs. uniprot
Match: D7G3W4_ECTSI (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W4_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 5.660e-40
Identity = 88/230 (38.26%), Postives = 121/230 (52.61%), Query Frame = 2
Query:  602 GGYVIDASPKYMYQMRTPYRVQKLLPHVRAVVLLRDPVERYFSSLAMYVCRG-----FPRAR------FHTPGKLQEYLAAAAESYAPYKPACRGAGAEPERLRECEKKADLAEPLNRGLYADQLERWLYLFNASQIMVVDSAELFSDVAGVVGRVAEFGGLSRFEFTYDPEKHAPQERCSHTARSK----YASLRSAIAASGEEKALRDFYRPHNERLFRLIGSDFGWN 1246
            G   +++SP+Y++    PYR+  + P  R V++LRDP +RYFS L M +C G     F R +      FH+PG    Y+     +Y PY P CRG  A  E LR+C +      PL RGLYADQLERW  +F+ SQI++VDSA +  D+ GV+  VA   GL   +F  D         C    R +    +           EE   R++YRPHNERLF+L+G    W+
Sbjct:   10 GKVTVESSPRYIFNPLAPYRMGMVQPFARLVLVLRDPTDRYFSQLRMTMCSGKTNQTFERVQENQATWFHSPGDAAGYIDGGEATYEPYTPLCRGENATTEDLRDCYRAQLPHHPLLRGLYADQLERWFRVFDKSQILIVDSANMMEDLPGVLADVAAHIGLPGSDFDSDRPVQHSTGLCPALGRGEDPDFFGEEGRYDKMLEEEDLFREWYRPHNERLFKLLGRSMMWD 239          
BLAST of mRNA_P-wetherbeei_contig1848.4.1 vs. uniprot
Match: A0A6H5KMM8_9PHAE (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMM8_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 8.750e-38
Identity = 81/216 (37.50%), Postives = 111/216 (51.39%), Query Frame = 2
Query:  632 YMYQMRTPYRVQKLLPHVRAVVLLRDPVERYFSSLAMYVCRGFPRAR-----------FHTPGKLQEYLAAAAESYAPYKPACRGAGAEPERLRECEKKADLAEPLNRGLYADQLERWLYLFNASQIMVVDSAELFSDVAGVVGRVAEFGGLSRFEFTYDPEKHAPQERCSHTARSKYASLRSAIAASGEEKALRDFYRPHNERLFRLIGSDFGWN 1246
            Y++    PYR++ + PH R VV+L+DP  RYFS   M +C     ++           FH PG+   YL    +    Y P CRG  AEP  L +C    +   PL RGLYADQLERW  +F+ SQI+V+DS+EL+ D    + R A   GL   +F Y+ +       C       +           +E+  RD+YRPHNERL+ LIG DF W+
Sbjct:    2 YVFYPLAPYRMKMVQPHARLVVILKDPTARYFSHARMTMCGKIDESKPKTSVNYRLRAFHAPGRAAGYLNRGTDKVERYAPLCRGVNAEPGDLAKCFMAINGQNPLLRGLYADQLERWFAVFSRSQILVIDSSELYRDFLPTLERAARHLGLPPHDFYYNSDFQHSTGACKENRPQFFGEDGRYKKMLEQEQLFRDWYRPHNERLYSLIGKDFKWD 217          
BLAST of mRNA_P-wetherbeei_contig1848.4.1 vs. uniprot
Match: A0A835YYW0_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYW0_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.300e-29
Identity = 93/251 (37.05%), Postives = 111/251 (44.22%), Query Frame = 2
Query:  350 TWPLFLIIGVQKGGASELKFQLFQHPMVAGARSEIHFFDRSDMAVTPG--------RMLRKSDVTRLLVTYSELLLPPKP---TRAERLRREREDGGYVIDASPKYMYQMRTPYRVQKLLPHVRAVVLLRDPVERYFSSLAMYVCR----GFPRARFHTPGKLQEYLAAAAESY-APYKPACRGAGAEPERLRECEKKADLAEPLNRGLYADQLERWLYLFNASQIMVVDSAELFSDVAGVVGRVAEFGGL 1054
            T PLF+IIG QK G + L+  L  HP +AG+R+E HFFD    A   G         +         L  YS  LL  +      A  +RR      +V D SP Y        R   L P  R V+L+RDPVERYFS+  M  C     G P   FH  G      A  A +Y A     C G    P R   C+  A     L RGLYAD L RWL  F A  ++VVDSA  F     V+  V  F GL
Sbjct:    7 TTPLFIIIGAQKAGTTNLRHNLLSHPSLAGSRTETHFFDWHFPAAGEGGDADDATTAIAEGGGAAAALRAYSRRLLQGRAGLVRAASDVRRVARGRAFVFDTSPSYYLIPAAAARAAALRPRARLVLLVRDPVERYFSAAHMVTCWNATVGLPTEAFHATGGAAARAAEFAAAYNASDADGCMGL---PLRGGRCQWGAFTGNALARGLYADALRRWLRAFPARNVLVVDSARYFRATQAVLDEVLAFLGL 254          
BLAST of mRNA_P-wetherbeei_contig1848.4.1 vs. uniprot
Match: D7G3W5_ECTSI (Similar to heparan sulfate sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W5_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.080e-26
Identity = 98/337 (29.08%), Postives = 143/337 (42.43%), Query Frame = 2
Query:  290 MITNGNHTPIPRATVGGAT---VTWPLFLIIGVQKGGASELKFQLFQHPMVAGAR-SEIHFFDRS-----DMAVTPGRM-------LRKSDVTRLLVTYSELLLPPKPTRAERLRREREDGGYVI--DASPKYMYQMRTPYRVQKLLPHVRAVVLLRDPVERYFSSLAMYVCRGFPRARFHTPGKLQEYLAAAAESYAPYKPACRGAGAEPERLRECEKKADLAEPLNRGLYADQLERWLYLFNASQIMVVDSAELFSDVAGVVGRVAEFGGLSRFEFTYDPEKHAPQERCSHTARSKYASLRSAIAASGEEKALRDFYRPHNERLFRLIGSDFGWN 1246
            M+ +    P+P  T        ++ PL  IIGVQKGG   L+  L QHP+++G   +E HFFDR+      +   PG         L  S    +L  YS   +     R      E E+ G  +  D+SP Y++    PYR++ + PH R VV+L+DP  R    +A+++ RGF                                    +R R+                 +QLERW  +F  SQI+V+DS+EL+ D    + R A   GL   +F YD +       C       +           +E+  RD+YRPHNERL+ LIG D  W+
Sbjct:   96 MLNSTEPLPVPVVTPNDGRRPPMSLPLGTIIGVQKGGTQNLRSHLLQHPLLSGVPGTEAHFFDRNPDTYPSLGEWPGNTGDARRAKLPASAAGEVLELYSNATM-----RTIGAPDELEEAGVTVTVDSSPMYIFYPLAPYRMKMVQPHARLVVILKDPTAR---KIAVFL-RGFS-----------------------------------DRKRQ----------------PNQLERWFAVFPRSQILVIDSSELYRDFLPTLERAARHLGLPPHDFYYDSDFQHGTGACKDNRPQFFGEDGRYKKMLEQEQLFRDWYRPHNERLYSLIGKDLKWD 372          
BLAST of mRNA_P-wetherbeei_contig1848.4.1 vs. uniprot
Match: A0A6P7LA94_BETSP (Sulfotransferase n=1 Tax=Betta splendens TaxID=158456 RepID=A0A6P7LA94_BETSP)

HSP 1 Score: 121 bits (303), Expect = 4.090e-26
Identity = 103/315 (32.70%), Postives = 132/315 (41.90%), Query Frame = 2
Query:  341 ATVTWPLFLIIGVQKGGASELKFQLFQHPMVAGARSEIHFFDRSDMAVTPGRMLRKSDVTRLLVTYSELLLPPKPTRAERLRREREDGGYVIDASPKYMYQMRTPYRVQKLLPHVRAVVLLRDPVERYFSSLAMYVCRGFPRARFHTPGKLQEYLAAAAESYAPYKPACRGAGAEPERLRECEKKADLAEPLNRGLYADQLERWLYLFNASQIMVVDSAELFSDVAGVVGRVAEFGGLSR--------------FEFTYDPEKHAPQERCSHTARSKYASLRSAIAASGEEKALRDFYRPHNERLFRLIGSDFGW 1243
            AT   P  LIIGV+KGG   L   L  HP +    SE HFFDR                 R L  Y  ++  PK            DG  V++ +P+Y   + TP RV  +   V+ +V++RDPV R  S     + +        TP         A ES A              + R   +   L  PL  GLYA  LERWL  F  SQI +V    L SD AG +GRV +F GL R              F     PE  +       T    +AS+  A+      + LRDFYRPHN+R +R+ G DFGW
Sbjct:  105 ATRRLPQALIIGVKKGGTRALLEFLRLHPDIRALGSEPHFFDRH--------------YARGLDWYRSMM--PKAL----------DGQIVMEKTPRYFVTVETPQRVHAMSRDVKLIVVVRDPVTRAISDYTQIISK--------TPD------IPAFESLA-------------FKNRTTGQIDSLWSPLWIGLYAQHLERWLAWFPRSQIHLVSGERLISDPAGELGRVQDFLGLQRIITDKHFYFNKTKGFPCLKKPEGSSKPHCLGKTKGRTHASIDPAVM-----RRLRDFYRPHNQRFYRMTGQDFGW 361          
BLAST of mRNA_P-wetherbeei_contig1848.4.1 vs. uniprot
Match: A0A7C1JAP0_9CHLR (Sulfotransferase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C1JAP0_9CHLR)

HSP 1 Score: 117 bits (292), Expect = 1.650e-25
Identity = 91/303 (30.03%), Postives = 137/303 (45.21%), Query Frame = 2
Query:  347 VTWPLFLIIGVQKGGASELKFQLFQHP-MVAGARSEIHFFDRSDMAVTPGRMLRKSDVTRLLVTYSELLLPPKPTRAERLRREREDGGYVIDASPKYMYQMRTPYRVQKLLPHVRAVVLLRDPVERYFSSLAMYVCRGFPRARFHTPGKLQ-EYLAAAAESYAPYKPACRGAGAEPERLRECEKKADLAEPLNRGLYADQLERWLYLFNASQIMVVDSAELFSDVAGVVGRVAEFGGLSRFEFTYDPEKHAPQERCSHTARSKYASLRSAIAASGEEKALRD-FYRPHNERLFRLIGSDFGWN 1246
            V+ P FLIIG QK G + L   L  HP +V GA  E+HFFD              +   R    Y      P     +++           +A+PKY+Y    P R+    P ++ + LLR+P++R FS+  +     F    F    + Q  Y+AA    Y    P  R  G                  L+RGLYADQL+R+  LF   Q+++++S EL  D  G + RV  F GL   +++   E++ P  +  +TA             + E +AL   F+RPHNERL+ ++G D+ W+
Sbjct:   22 VSAPAFLIIGAQKAGTTALFAYLDAHPQIVKGAAKEMHFFD--------------NHFDRGTGWYHARFPLPAALHPDKI---------TYEATPKYLYDPNVPARIHDYNPSIKLIALLRNPIDRAFSAWNVPGWNKFGYESFDAMAREQVAYIAAHGTGY----PGSRHVGF-----------------LHRGLYADQLKRYFELFPREQLLILESGELRRDPVGTMNRVTAFIGLKSHDWSQ--EEYHPANKGIYTA-----------PMTDETRALLSAFFRPHNERLYAMLGVDYDWD 267          
BLAST of mRNA_P-wetherbeei_contig1848.4.1 vs. uniprot
Match: A0A0M0BQB9_9ARCH (Sulfotransfer_1 domain-containing protein n=1 Tax=miscellaneous Crenarchaeota group-15 archaeon DG-45 TaxID=1685127 RepID=A0A0M0BQB9_9ARCH)

HSP 1 Score: 115 bits (289), Expect = 4.730e-25
Identity = 98/306 (32.03%), Postives = 144/306 (47.06%), Query Frame = 2
Query:  356 PLFLIIGVQKGGASELKFQLFQHPMVAGA-RSEIHFFDRSDMAVTPGRMLRKSDVTRLLVTYSELLLPPKPTR--AERLRREREDGGYVI-DASPKYMYQMRTPYRVQKLLPHVRAVVLLRDPVERYFSSLAMYVCRGFPRARFHTPGKLQ-EYLAAAAESYAPYKPACRGAGAEPERLRECE----KKADLAEPLNRGLYADQLERWLYLFNASQIMVVDSAELFSDVAGVVGRVAEFGGLSRFEFTYDPEKHAPQERCSHTARSKYASLRSAIAASGEEKALRDFYRPHNERLFRLIGSDFGWN 1246
            P F+IIG Q+ G + L   L +HP VA A + E HFFD     V  GR           +++   L P   ++  AER+R     GG+   +ASP Y++    P R+ + LP V+ + LLR+PV+R +S  +    RG     F    + + E L              RG   E ER+ E E        L   L+RG+Y DQL RW+ LF   Q++V+ S + F+D    +GRV +F GL R+E                   S++   R     +G  + L +F+ PHN RL+ L+G DF W+
Sbjct:   19 PDFIIIGGQRCGTTSLYNNLVRHPCVAPAFQKEAHFFD-----VHFGRG----------ISWYRSLFPTVVSKRWAERVR----GGGFATGEASPYYIFHPHAPRRIFEALPGVKLIALLRNPVDRAYSHYSARARRGVEALSFGEAVEREGERL--------------RG---EEERMLEDEGYYSPSHRLFSYLSRGVYVDQLRRWMDLFPRDQLLVLRSEDFFADPGAELGRVTDFLGLPRWE---------------GWEISRFNVGRYREMDAGVRRRLVEFFEPHNRRLYDLLGVDFDWS 273          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1848.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JDR2_9PHAE2.590e-4634.06Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
D7G9G8_ECTSI4.270e-4538.91Putative deacetylase sulfotransferase n=1 Tax=Ecto... [more]
D7FST9_ECTSI6.970e-4134.56Sulfotransferase n=1 Tax=Ectocarpus siliculosus Ta... [more]
D7G3W4_ECTSI5.660e-4038.26Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
A0A6H5KMM8_9PHAE8.750e-3837.50Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
A0A835YYW0_9STRA1.300e-2937.05P-loop containing nucleoside triphosphate hydrolas... [more]
D7G3W5_ECTSI1.080e-2629.08Similar to heparan sulfate sulfotransferase n=1 Ta... [more]
A0A6P7LA94_BETSP4.090e-2632.70Sulfotransferase n=1 Tax=Betta splendens TaxID=158... [more]
A0A7C1JAP0_9CHLR1.650e-2530.03Sulfotransferase n=1 Tax=Chloroflexi bacterium Tax... [more]
A0A0M0BQB9_9ARCH4.730e-2532.03Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1848contigP-wetherbeei_contig1848:2789..6536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G9G8
Model size2307
Max annot lvl2880.D7G9G8|-
Hectar predicted targeting categorysignal peptide
Exons4
Evalue1.9e-47
EggNOG OGsKOG3704@1|root,KOG3704@2759|Eukaryota
Descriptionheparan sulfate sulfotransferase activity
Cds size1536
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1848.4.1prot_P-wetherbeei_contig1848.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1848 2928..5904 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186147.2762306-UTR-P-wetherbeei_contig1848:2788..29271683186147.2762306-UTR-P-wetherbeei_contig1848:2788..2927Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1848 2789..2927 +
1683186147.324558-UTR-P-wetherbeei_contig1848:5904..65361683186147.324558-UTR-P-wetherbeei_contig1848:5904..6536Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1848 5905..6536 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186147.2859209-CDS-P-wetherbeei_contig1848:2927..35731683186147.2859209-CDS-P-wetherbeei_contig1848:2927..3573Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1848 2928..3573 +
1683186147.294581-CDS-P-wetherbeei_contig1848:4256..44471683186147.294581-CDS-P-wetherbeei_contig1848:4256..4447Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1848 4257..4447 +
1683186147.3037407-CDS-P-wetherbeei_contig1848:4959..51001683186147.3037407-CDS-P-wetherbeei_contig1848:4959..5100Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1848 4960..5100 +
1683186147.313643-CDS-P-wetherbeei_contig1848:5346..59041683186147.313643-CDS-P-wetherbeei_contig1848:5346..5904Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1848 5347..5904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1848.4.1

>prot_P-wetherbeei_contig1848.4.1 ID=prot_P-wetherbeei_contig1848.4.1|Name=mRNA_P-wetherbeei_contig1848.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=512bp
MLLEDHGVSSWLRIFRFFLCVAVAHAVDASPFPYKAEMFDAEDIGAAWKR
MITNGNHTPIPRATVGGATVTWPLFLIIGVQKGGASELKFQLFQHPMVAG
ARSEIHFFDRSDMAVTPGRMLRKSDVTRLLVTYSELLLPPKPTRAERLRR
EREDGGYVIDASPKYMYQMRTPYRVQKLLPHVRAVVLLRDPVERYFSSLA
MYVCRGFPRARFHTPGKLQEYLAAAAESYAPYKPACRGAGAEPERLRECE
KKADLAEPLNRGLYADQLERWLYLFNASQIMVVDSAELFSDVAGVVGRVA
EFGGLSRFEFTYDPEKHAPQERCSHTARSKYASLRSAIAASGEEKALRDF
YRPHNERLFRLIGSDFGWNDAPRTIATARAAGADAGTGGVDAADAAAGAR
TWEGWAAEAEAEAAAAAVEAAEARLAGKKSTSLGSPRQRSSLGSQRSGQR
RRGSRRRPGGDGGGDGGGGGGGGGDDVGEAIVGPPLAFWHKDWTAEGNFV
SEDAYMNGGGA*
back to top

mRNA from alignment at P-wetherbeei_contig1848:2789..6536+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1848.4.1 ID=mRNA_P-wetherbeei_contig1848.4.1|Name=mRNA_P-wetherbeei_contig1848.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3748bp|location=Sequence derived from alignment at P-wetherbeei_contig1848:2789..6536+ (Phaeothamnion wetherbeei SAG_119_79)
AAGCTGAGATTGGCCCTGACTTCTTTTTGAAGTTATCAGCAACTGATCAT TAGTGGTTGATGGAAAGAGGGTAGACCGGATAGTGCAAATTGCCCTCCCA AAGCCGTCGTCGTTCGTTTATTTTAATTTTATTGCGAGGATGCTGCTGGA AGACCATGGCGTTTCGTCATGGCTTCGCATTTTCCGTTTCTTTCTATGCG TCGCGGTCGCGCATGCCGTCGACGCTTCCCCTTTCCCCTACAAGGCGGAA ATGTTCGACGCGGAGGACATTGGGGCAGCGTGGAAGAGAATGATAACAAA CGGTAACCATACGCCGATCCCTCGAGCCACCGTGGGAGGCGCAACAGTCA CTTGGCCACTTTTTCTGATCATCGGCGTGCAGAAGGGGGGCGCGAGCGAG CTGAAGTTCCAATTATTTCAGCACCCGATGGTCGCCGGCGCGAGATCGGA GATACACTTCTTTGACCGCTCAGACATGGCCGTCACGCCCGGTCGCATGC TCCGGAAGAGCGATGTGACGCGCCTCCTTGTGACCTACTCAGAACTTCTG CTCCCGCCAAAGCCGACGCGAGCGGAGCGCTTGAGAAGAGAGAGGGAGGA CGGAGGTTACGTCATCGACGCCTCGCCGAAGTACATGTACCAGATGCGGA CGCCCTACCGCGTCCAGAAGCTCTTGCCGCACGTCAGAGCGGTGGTGCTT CTGAGGGATCCGGTGGAGCGTTACTTTTCGTCGCTGGCCATGTATGTCTG CCGCGGCTTTCCGCGTGCGCGCTTCCATACCCCAGGTGAGAAGGAAACGA TGGAGGAAAGGCGAAGAGGAGCTTCTTGGGTGACTGGCTTTCTGGACAGA AGCCCAATTTCCTGTGCGTTTGCGTCCGTGCTTACTGATTGCTTTTTTTG GTGCTTACATCTTATGCGCTTACAATTGTCGTTCGTCTCCCGTTGTTGCA CCCTGCGCTTGCCTTACCACTCTTTTTTAAGGCTGTTTCCCCTGGTTAGC TATTTTTCGCGGTGGGATAGCCTCTGGGTTTTTATCAAGGCGCGTTTAAT TGATGAAGGCCTGACCCCCTGCTCCTTACTGTTTGGCCCCATTGGATTGC CCGGTGCATCCTTTATTTGCTTTTAGCTCATCTTTTCTGACCACTTCTCG TTTTGCGTCCTTCTCAAGTTCGTGGAACTACGGTTCGGCGTTGCTCCAGC GTCGCGTTTCTTGCATGGCTTCCGCTGGCCTGTGACATCCTGCATCTCTA CCGGCGCGTGGCTTTTGTGCGGCTATCGTCTGGCTTTGATACTAATCTGA CGGCTGGTCTGATCTGCTGTAGAACGGCGTCCATCCGCTTGGCGGGTCTG TCCGTTGGCACGGCCATCATCCCGGCTGCGCTTCCGGTCCCGTCCGCTCG GGTACGGCTGGTTACGGCCTGCTTTGGTTGTTCATCACCCAACAAACCAC ACCAACCAAACGGAGCAGGAAAGCTGCAAGAGTACTTGGCGGCGGCGGCG GAGAGCTACGCGCCGTACAAGCCAGCGTGCCGCGGAGCTGGCGCGGAGCC GGAGCGGCTGCGGGAGTGCGAGAAGAAGGCCGACCTCGCCGAGCCGCTCA ACCGCGGCCTCTACGCGGATCAGCTCGAGCGCTGGCTGTACCTCTTTAAC GCCTCGCAGGCGAGTAAAAAAATGGCAACCTTAACGTGAATTTAGACACA GTCTTGCTCCGATCTTTCCAGGGTTGGTGCGAATGGCGTTATTGTTGTTT CGCCTCCTTTCGCCTGTTGTCTTCAGGTTGTCGGCTCTTGCTTTAAGCGC GGTTGGGGATTCCCGGGTGGGGCGAAAGAAGGCTAGAGTCGTTGTGTCTC CCAGGGCTTACGGATGTTGCCTCAGCTTTTTCGGGTAGAGTTGCGTCGGT CATTATCTCCGTTTGCCAAGTTGGTGGTGGGCGACTTTTCTCTTCCCCTT TCTCTTCGCTCGATGACTTCGCACGGTTCCCACGGTGTCTTCCTCCTTTT CGGTACCATGCGTCGTAAAGTTTTCTTTTACTTCTCCTGGTCGATTTGCA TGGCCCTGCCTGCGCCTTCCCATCGTCTCCTTACCCCATCCGTCCTTACA TTACCACTGCTTCTCCTCCCAGATTTCCGCCTCGCGTTTCTTTTCCCCAA TTCTTGACTTTTCCCGTGCAGATAATGGTGGTGGACAGTGCCGAGCTTTT TTCCGACGTCGCCGGCGTCGTGGGGCGCGTGGCGGAGTTCGGCGGCCTCT CGCGGTTCGAGTTCACGTACGATCCAGAGAAACACGCCCCACAGGAGCGC TGTTCGCATACGGTGCGGCTGGGGCGATGGGCTTTCTGCTTTTCCCTTCC ATACAAATACTGTTCCAATCTTTTTAAGTTGCCCATGGCGGCACGAAATG CGTCCTCTTCCGTTGAATGTTTTGGCTTTGCTGGGGAAGTGTTGCTTTCT CAGTAGGAGTGAAGGCGGAAAATTTTGGTGGCCAGAGAAACCCGTTCTAA TCTGTTGTGGCCTTCTTTCCTTTCCGCATGCGGGGCTGCGCGCGTCCGGA TTGAGCAGGCCCGATCGAAGTACGCATCACTGCGGTCGGCGATTGCCGCC TCGGGCGAGGAGAAGGCGCTGCGTGATTTCTATCGCCCGCACAACGAGCG CCTCTTCCGCCTCATTGGCAGCGACTTCGGCTGGAACGACGCGCCGCGAA CGATCGCCACCGCCCGCGCCGCCGGCGCTGACGCAGGCACCGGCGGCGTC GATGCAGCCGACGCTGCGGCCGGCGCGCGCACCTGGGAAGGCTGGGCTGC GGAGGCGGAGGCGGAGGCGGCGGCAGCGGCGGTTGAGGCGGCGGAGGCGC GGCTCGCCGGGAAGAAGTCCACGTCGCTCGGCAGCCCGCGGCAGCGGTCC AGTCTGGGCTCTCAGCGCTCCGGGCAGCGACGCCGCGGCAGCAGGAGGAG ACCGGGCGGCGACGGCGGCGGCGACGGGGGCGGCGGCGGCGGCGGCGGCG GCGACGATGTGGGGGAGGCGATAGTCGGGCCGCCGCTCGCCTTCTGGCAC AAGGACTGGACGGCCGAGGGCAACTTTGTGTCTGAGGACGCCTACATGAA TGGCGGCGGCGCTTGACTTCAGCACTCGCCCCCGGTGGTTGCGACTTGCT TTTTCTGGCGCCTCTGTCCGATAGGAGTGGTTCATCAGCGGCGGCGGGGG CTGCAGCTGCAATGGCATCGAAAGTGGCGGCAACAGCGGCGATGGCAATG TGGTGGCGGCGGCGGCGCTTCTGCAGCGCGGCGCAAGCTTCTTCCCTGCG GTGAAGCGCCTGCGGCGGCGGAATGCCGGCGTTGCGCCCTTTCAGTGTCT GTTTCTGAAGTAACTTTTTGATCATGTCTGCCGTGGCGTGGCGGACGAGG GATGCGGTGCGGACGTGCGAACAGGTTTGGGGTCAAGTGGAGGTCTTTCG CCGCGCTTGGTGGCATTCGGGGGGGTGCGGTGCTTTTCGGATGTCAAGTT GTCTCCCGATTGTGGCACGATGGTGTGAAGTTGTGCCTTGGCGCATAAGG TGCCATGCCTTGTGGAAGATGAGGTGGGCTTTGTAATTTCGTGGCGAGGA GCGGATGTTTCTTTGTAGCGCGAGCAGCTCTTCGTTTCGGGCGCCCCTCG CCAAAGAGCCGAAGGGGCTATTGTAAAGTAACTATCGGCGGGTCGGCTTG AGGGATCCGCAGGCTCGGGTTGGGTTATTTGGGGCTGTCTGCTGCGGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1848:2789..6536+

>mRNA_P-wetherbeei_contig1848.4.1 ID=mRNA_P-wetherbeei_contig1848.4.1|Name=mRNA_P-wetherbeei_contig1848.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1536bp|location=Sequence derived from alignment at P-wetherbeei_contig1848:2789..6536+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCTGGAAGACCATGGCGTTTCGTCATGGCTTCGCATTTTCCGTTT
CTTTCTATGCGTCGCGGTCGCGCATGCCGTCGACGCTTCCCCTTTCCCCT
ACAAGGCGGAAATGTTCGACGCGGAGGACATTGGGGCAGCGTGGAAGAGA
ATGATAACAAACGGTAACCATACGCCGATCCCTCGAGCCACCGTGGGAGG
CGCAACAGTCACTTGGCCACTTTTTCTGATCATCGGCGTGCAGAAGGGGG
GCGCGAGCGAGCTGAAGTTCCAATTATTTCAGCACCCGATGGTCGCCGGC
GCGAGATCGGAGATACACTTCTTTGACCGCTCAGACATGGCCGTCACGCC
CGGTCGCATGCTCCGGAAGAGCGATGTGACGCGCCTCCTTGTGACCTACT
CAGAACTTCTGCTCCCGCCAAAGCCGACGCGAGCGGAGCGCTTGAGAAGA
GAGAGGGAGGACGGAGGTTACGTCATCGACGCCTCGCCGAAGTACATGTA
CCAGATGCGGACGCCCTACCGCGTCCAGAAGCTCTTGCCGCACGTCAGAG
CGGTGGTGCTTCTGAGGGATCCGGTGGAGCGTTACTTTTCGTCGCTGGCC
ATGTATGTCTGCCGCGGCTTTCCGCGTGCGCGCTTCCATACCCCAGGAAA
GCTGCAAGAGTACTTGGCGGCGGCGGCGGAGAGCTACGCGCCGTACAAGC
CAGCGTGCCGCGGAGCTGGCGCGGAGCCGGAGCGGCTGCGGGAGTGCGAG
AAGAAGGCCGACCTCGCCGAGCCGCTCAACCGCGGCCTCTACGCGGATCA
GCTCGAGCGCTGGCTGTACCTCTTTAACGCCTCGCAGATAATGGTGGTGG
ACAGTGCCGAGCTTTTTTCCGACGTCGCCGGCGTCGTGGGGCGCGTGGCG
GAGTTCGGCGGCCTCTCGCGGTTCGAGTTCACGTACGATCCAGAGAAACA
CGCCCCACAGGAGCGCTGTTCGCATACGGCCCGATCGAAGTACGCATCAC
TGCGGTCGGCGATTGCCGCCTCGGGCGAGGAGAAGGCGCTGCGTGATTTC
TATCGCCCGCACAACGAGCGCCTCTTCCGCCTCATTGGCAGCGACTTCGG
CTGGAACGACGCGCCGCGAACGATCGCCACCGCCCGCGCCGCCGGCGCTG
ACGCAGGCACCGGCGGCGTCGATGCAGCCGACGCTGCGGCCGGCGCGCGC
ACCTGGGAAGGCTGGGCTGCGGAGGCGGAGGCGGAGGCGGCGGCAGCGGC
GGTTGAGGCGGCGGAGGCGCGGCTCGCCGGGAAGAAGTCCACGTCGCTCG
GCAGCCCGCGGCAGCGGTCCAGTCTGGGCTCTCAGCGCTCCGGGCAGCGA
CGCCGCGGCAGCAGGAGGAGACCGGGCGGCGACGGCGGCGGCGACGGGGG
CGGCGGCGGCGGCGGCGGCGGCGACGATGTGGGGGAGGCGATAGTCGGGC
CGCCGCTCGCCTTCTGGCACAAGGACTGGACGGCCGAGGGCAACTTTGTG
TCTGAGGACGCCTACATGAATGGCGGCGGCGCTTGA
back to top