mRNA_P-wetherbeei_contig18478.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18478.1.1
Unique NamemRNA_P-wetherbeei_contig18478.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18478.1.1 vs. uniprot
Match: D7FQB1_ECTSI (SAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQB1_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 4.770e-13
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 1
Query:   37 LAELLEELGLGKYGRIFAESEVDLDALALMEEGDLADLSIPKGPRLKILNAI 192
            L ++L+ +GLGKY   FAE+EVDL+AL LM E DLAD+ IPKGPRLKILNA+
Sbjct:  572 LGKVLQTMGLGKYCPKFAENEVDLEALGLMSESDLADIGIPKGPRLKILNAV 623          
BLAST of mRNA_P-wetherbeei_contig18478.1.1 vs. uniprot
Match: A0A835YT56_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT56_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.670e-11
Identity = 36/54 (66.67%), Postives = 39/54 (72.22%), Query Frame = 1
Query:   34 ALAELLEELGLGKYGRIFAESEVDLDALALMEEGDLADLSIPKGPRLKILNAIR 195
            +LAELL  L L KY R   E+EVDLDAL LM E D  DL IPKGPRLKI+NA R
Sbjct:  394 SLAELLCALKLTKYARPLEENEVDLDALQLMSEADFTDLGIPKGPRLKIMNAAR 447          
BLAST of mRNA_P-wetherbeei_contig18478.1.1 vs. uniprot
Match: A0A1X7U136_AMPQE (SAM domain-containing protein n=3 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7U136_AMPQE)

HSP 1 Score: 62.0 bits (149), Expect = 2.260e-9
Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 1
Query:   37 LAELLEELGLGKYGRIFAESEVDLDALALMEEGDLADLSIPKGPRLKILNAIRRQ 201
            L+ LL++LGL KY  +F ++E+D  AL LM E D A++ IPKGPR+K+LNAI R+
Sbjct: 2689 LSGLLDKLGLSKYHNLFQKNEIDHHALLLMSEKDFAEVGIPKGPRVKLLNAIGRK 2743          
BLAST of mRNA_P-wetherbeei_contig18478.1.1 vs. uniprot
Match: D7FHT5_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT5_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 2.980e-9
Identity = 27/53 (50.94%), Postives = 40/53 (75.47%), Query Frame = 1
Query:   37 LAELLEELGLGKYGRIFAESEVDLDALALMEEGDLADLSIPKGPRLKILNAIR 195
            LAE L ++GLG+Y +   E+E+DL+A+ LM + D  D+ IPKGPR+K+L A+R
Sbjct:  443 LAEFLGDMGLGQYAQALTENEIDLEAVQLMADSDFQDIGIPKGPRVKLLYALR 495          
BLAST of mRNA_P-wetherbeei_contig18478.1.1 vs. uniprot
Match: A0A6H5JET1_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET1_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 3.020e-9
Identity = 27/53 (50.94%), Postives = 40/53 (75.47%), Query Frame = 1
Query:   37 LAELLEELGLGKYGRIFAESEVDLDALALMEEGDLADLSIPKGPRLKILNAIR 195
            LAE L ++GLG+Y +   E+E+DL+A+ LM + D  D+ IPKGPR+K+L A+R
Sbjct:  583 LAEFLGDMGLGQYAQALTENEIDLEAVQLMADSDFQDIGIPKGPRVKLLYALR 635          
BLAST of mRNA_P-wetherbeei_contig18478.1.1 vs. uniprot
Match: A0A7S2PSC4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PSC4_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.450e-8
Identity = 34/55 (61.82%), Postives = 38/55 (69.09%), Query Frame = 1
Query:   25 MDEALAELLEELGLGKYGRIFAESEVDLDALALMEEGDLADLSIPKGPRLKILNA 189
            MDE  A  L+ L L KY  I  E+EVDL  L LM+E DLA+L IPKGPRLKIL A
Sbjct: 1072 MDELTA-FLQTLNLSKYAPILQENEVDLAVLPLMKEVDLAELGIPKGPRLKILRA 1125          
BLAST of mRNA_P-wetherbeei_contig18478.1.1 vs. uniprot
Match: UPI00077A5B7E (ankyrin repeat and KH domain-containing protein mask-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A5B7E)

HSP 1 Score: 59.3 bits (142), Expect = 1.980e-8
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 1
Query:   31 EALAELLEELGLGKYGRIFAESEVDLDALALMEEGDLADLSIPKGPRLKILNAIR 195
            + L   LE L L  +  +F E+E+DLDAL LM E D AD+ +PKGPR+K+LN+ R
Sbjct: 1048 DTLQTFLERLSLSSHLGLFQENEIDLDALLLMSEKDYADIGLPKGPRVKLLNSTR 1102          
BLAST of mRNA_P-wetherbeei_contig18478.1.1 vs. uniprot
Match: UPI001CF56318 (ankyrin repeat domain-containing protein 17-like isoform X1 n=2 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF56318)

HSP 1 Score: 59.3 bits (142), Expect = 2.010e-8
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 1
Query:   31 EALAELLEELGLGKYGRIFAESEVDLDALALMEEGDLADLSIPKGPRLKILNAIR 195
            + L   LE L L  +  +F E+E+DLDAL LM E D AD+ +PKGPR+K+LN+ R
Sbjct: 1968 DTLQTFLERLSLSSHLGLFQENEIDLDALLLMSEKDYADIGLPKGPRVKLLNSTR 2022          
BLAST of mRNA_P-wetherbeei_contig18478.1.1 vs. uniprot
Match: UPI00053C1989 (uncharacterized protein LOC104824671 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C1989)

HSP 1 Score: 58.9 bits (141), Expect = 2.490e-8
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 1
Query:   31 EALAELLEELGLGKYGRIFAESEVDLDALALMEEGDLADLSIPKGPRLKILNAI 192
            + + +LL  LGLGKY  +F   EVD+ AL  M+E DL DL+IP GPR KIL A+
Sbjct:  301 QTVDDLLNSLGLGKYAVLFKAEEVDMTALKQMKESDLKDLTIPMGPRKKILQAL 354          
BLAST of mRNA_P-wetherbeei_contig18478.1.1 vs. uniprot
Match: A0A382VC15_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382VC15_9ZZZZ)

HSP 1 Score: 57.4 bits (137), Expect = 2.970e-8
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 1
Query:   49 LEELGLGKYGRIFAESEVDLDALALMEEGDLADLSIPKGPRLKILNAI 192
            L+ LGL KY  +FAE+E+DLDA+ L+ E D  +L +P GPR K+L A+
Sbjct:    9 LDNLGLSKYADVFAENEIDLDAVGLLSEEDFKELGLPMGPRRKLLAAV 56          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18478.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQB1_ECTSI4.770e-1367.31SAM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YT56_9STRA3.670e-1166.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1X7U136_AMPQE2.260e-954.55SAM domain-containing protein n=3 Tax=Amphimedon q... [more]
D7FHT5_ECTSI2.980e-950.94SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JET1_9PHAE3.020e-950.94SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2PSC4_9STRA1.450e-861.82Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
UPI00077A5B7E1.980e-850.91ankyrin repeat and KH domain-containing protein ma... [more]
UPI001CF563182.010e-850.91ankyrin repeat domain-containing protein 17-like i... [more]
UPI00053C19892.490e-853.70uncharacterized protein LOC104824671 n=1 Tax=Taren... [more]
A0A382VC15_9ZZZZ2.970e-852.08Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18478contigP-wetherbeei_contig18478:820..1059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog157072.XP_008871710.1
PFAMsSAM_1,SAM_2
Model size240
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0007275,GO:0007368,GO:0007389,GO:0007507,GO:0008150,GO:0009799,GO:0009855,GO:0009966,GO:0009968,GO:0010646,GO:0010648,GO:0023051,GO:0023057,GO:0030111,GO:0030178,GO:0032501,GO:0032502,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0060828,GO:0065007,GO:0072359,GO:0090090,GO:0097159,GO:1901363
Exons1
Evalue2.9e-11
EggNOG OGsKOG4374@1|root,KOG4374@2759|Eukaryota
DescriptionRNA binding
Cds size216
COG categoryA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186147.2243075-CDS-P-wetherbeei_contig18478:819..10351683186147.2243075-CDS-P-wetherbeei_contig18478:819..1035Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18478 820..1035 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186147.2361662-UTR-P-wetherbeei_contig18478:1035..10591683186147.2361662-UTR-P-wetherbeei_contig18478:1035..1059Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18478 1036..1059 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18478.1.1prot_P-wetherbeei_contig18478.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18478 820..1035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18478.1.1

>prot_P-wetherbeei_contig18478.1.1 ID=prot_P-wetherbeei_contig18478.1.1|Name=mRNA_P-wetherbeei_contig18478.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=72bp
MDEALAELLEELGLGKYGRIFAESEVDLDALALMEEGDLADLSIPKGPRL
KILNAIRRQKRSSSRSSEESA*
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mRNA from alignment at P-wetherbeei_contig18478:820..1059-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18478.1.1 ID=mRNA_P-wetherbeei_contig18478.1.1|Name=mRNA_P-wetherbeei_contig18478.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig18478:820..1059- (Phaeothamnion wetherbeei SAG_119_79)
GCGTCGGCGGCGCCGAGGCGTCGCATGGACGAGGCGCTGGCGGAGCTGCT GGAGGAGCTGGGCCTGGGCAAGTACGGTCGCATCTTTGCGGAGAGCGAGG TGGACCTGGACGCGCTGGCGCTCATGGAGGAGGGCGATCTGGCCGACCTG AGCATCCCCAAGGGCCCGCGGCTCAAGATCCTCAACGCCATCCGCCGCCA GAAGCGCAGCTCCTCCCGCTCCAGCGAGGAGTCGGCTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18478:820..1059-

>mRNA_P-wetherbeei_contig18478.1.1 ID=mRNA_P-wetherbeei_contig18478.1.1|Name=mRNA_P-wetherbeei_contig18478.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig18478:820..1059- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGAGGCGCTGGCGGAGCTGCTGGAGGAGCTGGGCCTGGGCAAGTA
CGGTCGCATCTTTGCGGAGAGCGAGGTGGACCTGGACGCGCTGGCGCTCA
TGGAGGAGGGCGATCTGGCCGACCTGAGCATCCCCAAGGGCCCGCGGCTC
AAGATCCTCAACGCCATCCGCCGCCAGAAGCGCAGCTCCTCCCGCTCCAG
CGAGGAGTCGGCTTGA
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