mRNA_P-wetherbeei_contig18462.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18462.1.1
Unique NamemRNA_P-wetherbeei_contig18462.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18462.1.1 vs. uniprot
Match: A0A225UB95_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UB95_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 6.080e-5
Identity = 24/52 (46.15%), Postives = 31/52 (59.62%), Query Frame = 1 
Query:    1 ASGAGHLDIVIWLHENRDEGCSRRGMPSLGGGTETLGAMDAAATNGHLPVLQ 156
            A+G G+L++V WLH+NRDEGC             T   MD AA NG+L VL+
Sbjct:    4 AAGFGYLEVVQWLHDNRDEGC-------------TSNEMDGAAANGYLDVLK 42
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BLAST of mRNA_P-wetherbeei_contig18462.1.1 vs. uniprot
Match: A0A7S3XTN1_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTN1_HETAK)

HSP 1 Score: 48.1 bits (113), Expect = 7.450e-5
Identity = 18/28 (64.29%), Postives = 22/28 (78.57%), Query Frame = 1 
Query:   13 GHLDIVIWLHENRDEGCSRRGMPSLGGG 96
            GHLD+V+WLHENR EGC+R+ M    GG
Sbjct:    3 GHLDVVMWLHENRTEGCTRKAMDGAAGG 30
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18462.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A225UB95_9STRA6.080e-546.15Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A7S3XTN1_HETAK7.450e-564.29Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18462contigP-wetherbeei_contig18462:75..308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog67593.Physo127170
Preferred nameLONRF2
PFAMsAnk,Ank_2,Ank_4,LON_substr_bdg,TPR_16,zf-C3HC4_2,zf-C3HC4_4,zf-RING_UBOX
Model size234
Max annot lvl2759|Eukaryota
KEGG koko:K10349
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0016567,GO:0016740,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0030162,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031624,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0036211,GO:0042176,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044390,GO:0044464,GO:0045732,GO:0045862,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0061136,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:2000058,GO:2000060
Exons1
Evalue8.68e-05
EggNOG OGsCOG0666@1|root,KOG0508@2759|Eukaryota
DescriptionEP4 subtype prostaglandin E2 receptor binding
Cds size234
COG categoryL
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186146.733844-CDS-P-wetherbeei_contig18462:74..3081683186146.733844-CDS-P-wetherbeei_contig18462:74..308Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18462 75..308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18462.1.1prot_P-wetherbeei_contig18462.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18462 75..308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18462.1.1

>prot_P-wetherbeei_contig18462.1.1 ID=prot_P-wetherbeei_contig18462.1.1|Name=mRNA_P-wetherbeei_contig18462.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=78bp
ASGAGHLDIVIWLHENRDEGCSRRGMPSLGGGTETLGAMDAAATNGHLPV
LQFLAANRGEGFTATGVHRAAANGHLGV
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mRNA from alignment at P-wetherbeei_contig18462:75..308+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18462.1.1 ID=mRNA_P-wetherbeei_contig18462.1.1|Name=mRNA_P-wetherbeei_contig18462.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig18462:75..308+ (Phaeothamnion wetherbeei SAG_119_79)
GCGAGCGGCGCGGGCCACTTGGACATTGTCATCTGGCTGCACGAGAACCG
CGACGAGGGCTGCAGCCGCCGCGGCATGCCGTCGCTCGGCGGCGGCACCG
AGACGCTAGGTGCCATGGACGCCGCCGCCACCAACGGTCATCTGCCGGTG
CTGCAGTTCCTCGCGGCCAACCGCGGCGAGGGCTTCACGGCCACGGGGGT
GCACCGGGCGGCGGCCAACGGCCACCTCGGGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18462:75..308+

>mRNA_P-wetherbeei_contig18462.1.1 ID=mRNA_P-wetherbeei_contig18462.1.1|Name=mRNA_P-wetherbeei_contig18462.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig18462:75..308+ (Phaeothamnion wetherbeei SAG_119_79)
GCGAGCGGCGCGGGCCACTTGGACATTGTCATCTGGCTGCACGAGAACCG
CGACGAGGGCTGCAGCCGCCGCGGCATGCCGTCGCTCGGCGGCGGCACCG
AGACGCTAGGTGCCATGGACGCCGCCGCCACCAACGGTCATCTGCCGGTG
CTGCAGTTCCTCGCGGCCAACCGCGGCGAGGGCTTCACGGCCACGGGGGT
GCACCGGGCGGCGGCCAACGGCCACCTCGGGGTG
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