prot_P-wetherbeei_contig1843.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig1843.1.1
Unique Nameprot_P-wetherbeei_contig1843.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length141
Homology
BLAST of mRNA_P-wetherbeei_contig1843.1.1 vs. uniprot
Match: D7FJT5_ECTSI (Splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJT5_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 2.100e-18
Identity = 43/93 (46.24%), Postives = 63/93 (67.74%), Query Frame = 0
Query:    4 SVGVYIGKLDPNVSNNLLADLLACCGGLSKLARVPDPATNALKPFGIATFATPRAAAVAVRVLNGMPLAGQEIVVKVGKKDVDAIQPFLDAFD 96
            S+ VY+GKL P   N+L+ +LL CCG + K  R  DP+T+  K FG  T+   +AAA++V++LN + LAGQ I+VKVGKK+  +++ FL   D
Sbjct:  135 SINVYVGKLKPETDNSLVQELLTCCGRVEKWNRAVDPSTDLPKAFGFCTYHNAQAAAISVQLLNDLELAGQPILVKVGKKEQPSLEAFLSPKD 227          
BLAST of mRNA_P-wetherbeei_contig1843.1.1 vs. uniprot
Match: A0A835Z4I4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4I4_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.770e-12
Identity = 41/87 (47.13%), Postives = 53/87 (60.92%), Query Frame = 0
Query:    5 VGVYIGKLDPNVSNNLLADLLACCGGLSKLARVPDPATNALKPFGIATFATPRAAAVAVRVLNGMPLAGQEIVVKVGKKDVDAIQPF 91
            V VY+GKL   V    + ++L   G L+K  R  D  TN LK FG AT+ T   A VAV+VLNG  + G+E++VKVGKK+  AI  F
Sbjct:   38 VTVYVGKLADAVEPQYVGEVLRSVGRLAKWNRANDAETNKLKHFGFATYRTAEEADVAVKVLNGQKVMGEELLVKVGKKEQAAIDEF 124          
BLAST of mRNA_P-wetherbeei_contig1843.1.1 vs. uniprot
Match: C1E996_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E996_MICCC)

HSP 1 Score: 65.5 bits (158), Expect = 1.120e-9
Identity = 32/82 (39.02%), Postives = 48/82 (58.54%), Query Frame = 0
Query:    1 ASQSVGVYIGKLDPNVSNNLLADLLACCGGLSKLARVPDPATNALKPFGIATFATPRAAAVAVRVLNGMPLAGQEIVVKVGK 82
            A +S  VY+GK+ PNV + L+  LL  CG +    RV DP  +  K FG   FA       A+R+L+G P+AG+E+++ V +
Sbjct:   39 AKESTTVYVGKIPPNVDDALVRKLLDACGEVRSWKRVMDPENDTPKRFGFCEFADAEGVLRAMRILDGFPVAGEELLLNVNQ 120          
BLAST of mRNA_P-wetherbeei_contig1843.1.1 vs. uniprot
Match: A0A7S0S4K1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S4K1_9CHLO)

HSP 1 Score: 64.3 bits (155), Expect = 2.070e-9
Identity = 36/99 (36.36%), Postives = 55/99 (55.56%), Query Frame = 0
Query:    3 QSVGVYIGKLDPNVSNNLLADLLACCGGLSKLARVPDPATNALKPFGIATFATPRAAAVAVRVLNGMPLAGQEIVVKVGKKDVDAIQPFLDAFDAAPAA 101
            +S  VY+GK+  +V ++++  LL  CG L    R  DP T  LK FG A F        A+R+LNG+ L GQE+++K       A Q +++ ++A  AA
Sbjct:   85 KSTTVYVGKIAASVEDSVVRHLLEACGPLKSWKRSEDPDTKQLKGFGFAEFTDAEGVCRAIRLLNGLKLDGQELLIKGNT----ATQRYVEHYEADKAA 179          
BLAST of mRNA_P-wetherbeei_contig1843.1.1 vs. uniprot
Match: A0A7S0I8P8_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0I8P8_MICPS)

HSP 1 Score: 62.4 bits (150), Expect = 5.860e-9
Identity = 30/82 (36.59%), Postives = 48/82 (58.54%), Query Frame = 0
Query:    1 ASQSVGVYIGKLDPNVSNNLLADLLACCGGLSKLARVPDPATNALKPFGIATFATPRAAAVAVRVLNGMPLAGQEIVVKVGK 82
            A +S  VY+GK+ P+V + L+ +LL  CG +    RV DP  +  K FG   FA       A+R+L+G P+A +E+++ V +
Sbjct:   83 AKESTTVYVGKIPPSVDDALVRELLDACGEVRSWKRVMDPENDTPKRFGFCEFADAEGVLRAMRILDGFPVANEELLLNVNQ 164          
BLAST of mRNA_P-wetherbeei_contig1843.1.1 vs. uniprot
Match: A0A7S0XBF3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0XBF3_9CHLO)

HSP 1 Score: 61.6 bits (148), Expect = 2.310e-8
Identity = 31/80 (38.75%), Postives = 44/80 (55.00%), Query Frame = 0
Query:    3 QSVGVYIGKLDPNVSNNLLADLLACCGGLSKLARVPDPATNALKPFGIATFATPRAAAVAVRVLNGMPLAGQEIVVKVGK 82
            QS  VY+GK+   V ++L+  LL  CGG+    RV DP  N  K FG   F        A+R+L+G PL G E+++ V +
Sbjct:  121 QSTTVYVGKIPAGVRDSLVRALLGACGGVRSWKRVMDPEKNTPKRFGFCEFDDAEGVLRAMRILDGFPLLGDELLLNVNQ 200          
BLAST of mRNA_P-wetherbeei_contig1843.1.1 vs. uniprot
Match: A0A7S1X6P2_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X6P2_9CHLO)

HSP 1 Score: 58.2 bits (139), Expect = 8.160e-8
Identity = 31/95 (32.63%), Postives = 48/95 (50.53%), Query Frame = 0
Query:    1 ASQSVGVYIGKLDPNVSNNLLADLLACCGGLSKLARVPDPATNALKPFGIATFATPRAAAVAVRVLNGMPLAGQEIVVKVGKKDVDAIQPFLDAF 95
            A +S  +Y+GK+   V+++LL  LL CCG +    R  DP T   K FG             +R+LNG  + GQ ++VK  +    A Q ++D +
Sbjct:   18 APESTTIYVGKIAATVTDDLLKQLLECCGKVKSWTRQADPETKQPKAFGFCDMEDAEGVMRCLRILNGREVHGQALLVKANQ----ATQKYVDYY 108          
BLAST of mRNA_P-wetherbeei_contig1843.1.1 vs. uniprot
Match: D8U2W0_VOLCA (RRM domain-containing protein (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U2W0_VOLCA)

HSP 1 Score: 55.1 bits (131), Expect = 2.850e-7
Identity = 29/79 (36.71%), Postives = 44/79 (55.70%), Query Frame = 0
Query:    1 ASQSVGVYIGKLDPNVSNNLLADLLACCGGLSKLARVPDPATNALKPFGIATFATPRAAAVAVRVLNGMPLAGQEIVVK 79
            A +S  VY+GK+  +V ++++  LL  CG +    R  DP T   K FG   F        A+R+LNG+ L GQE+++K
Sbjct:    4 AEKSTTVYVGKIASSVPDSVVRTLLDACGRVKSWKRQMDPDTKQPKGFGFCEFEDAEGVLRAMRLLNGLKLDGQELLLK 82          
BLAST of mRNA_P-wetherbeei_contig1843.1.1 vs. uniprot
Match: A0A835XM43_9CHLO (RRM domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XM43_9CHLO)

HSP 1 Score: 57.4 bits (137), Expect = 5.920e-7
Identity = 33/101 (32.67%), Postives = 52/101 (51.49%), Query Frame = 0
Query:    1 ASQSVGVYIGKLDPNVSNNLLADLLACCGGLSKLARVPDPATNALKPFGIATFATPRAAAVAVRVLNGMPLAGQEIVVKVGKKDVDAIQPFLDAFDAAPAA 101
            A +S  VY+GK+  +V ++++  LL  CG +    R  DP T   K FG   F        A+R+LNG+ + GQE+++K       A Q + + +DA   A
Sbjct:   60 AEKSTTVYVGKIASSVPDSIVRHLLDACGKVKSWKRQQDPDTKQPKGFGFCEFEDAEGVLRALRLLNGVKIDGQELLLKCNA----ATQKYTEQYDAQRTA 156          
BLAST of mRNA_P-wetherbeei_contig1843.1.1 vs. uniprot
Match: A0A835XLC6_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XLC6_9CHLO)

HSP 1 Score: 57.4 bits (137), Expect = 7.400e-7
Identity = 33/101 (32.67%), Postives = 52/101 (51.49%), Query Frame = 0
Query:    1 ASQSVGVYIGKLDPNVSNNLLADLLACCGGLSKLARVPDPATNALKPFGIATFATPRAAAVAVRVLNGMPLAGQEIVVKVGKKDVDAIQPFLDAFDAAPAA 101
            A +S  VY+GK+  +V ++++  LL  CG +    R  DP T   K FG   F        A+R+LNG+ + GQE+++K       A Q + + +DA   A
Sbjct:   60 AEKSTTVYVGKIASSVPDSIVRHLLDACGKVKSWKRQQDPDTKQPKGFGFCEFEDAEGVLRALRLLNGVKIDGQELLLKCNA----ATQKYTEQYDAQRTA 156          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1843.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FJT5_ECTSI2.100e-1846.24Splicing factor PWI domain-containing protein / RN... [more]
A0A835Z4I4_9STRA1.770e-1247.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
C1E996_MICCC1.120e-939.02Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A0A7S0S4K1_9CHLO2.070e-936.36Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A7S0I8P8_MICPS5.860e-936.59Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A7S0XBF3_9CHLO2.310e-838.75Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A7S1X6P2_9CHLO8.160e-832.63Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
D8U2W0_VOLCA2.850e-736.71RRM domain-containing protein (Fragment) n=1 Tax=V... [more]
A0A835XM43_9CHLO5.920e-732.67RRM domain-containing protein n=1 Tax=Edaphochlamy... [more]
A0A835XLC6_9CHLO7.400e-732.67Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 139..141
NoneNo IPR availablePANTHERPTHR18806RBM25 PROTEINcoord: 4..91
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 6..79
e-value: 8.8E-11
score: 51.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 7..76
e-value: 5.2E-10
score: 39.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 5..83
score: 11.161792
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..88
e-value: 7.5E-12
score: 47.4
IPR034268RBM25, RNA recognition motifCDDcd12446RRM_RBM25coord: 7..83
e-value: 2.35409E-23
score: 84.9682
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 7..84

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1843contigP-wetherbeei_contig1843:565..987 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1843.1.1mRNA_P-wetherbeei_contig1843.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig1843 565..987 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig1843.1.1 ID=prot_P-wetherbeei_contig1843.1.1|Name=mRNA_P-wetherbeei_contig1843.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=141bp
ASQSVGVYIGKLDPNVSNNLLADLLACCGGLSKLARVPDPATNALKPFGI
ATFATPRAAAVAVRVLNGMPLAGQEIVVKVGKKDVDAIQPFLDAFDAAPA
AVAAAKAAAAAEAAAAEESEAADVMAVSGTTVSADDSGAAA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR034268RBM25_RRM
IPR035979RBD_domain_sf