mRNA_P-wetherbeei_contig1843.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1843.1.1
Unique NamemRNA_P-wetherbeei_contig1843.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1843.1.1 vs. uniprot
Match: D7FJT5_ECTSI (Splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJT5_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 2.100e-18
Identity = 43/93 (46.24%), Postives = 63/93 (67.74%), Query Frame = 1 
Query:   10 SVGVYIGKLDPNVSNNLLADLLACCGGLSKLARVPDPATNALKPFGIATFATPRAAAVAVRVLNGMPLAGQEIVVKVGKKDVDAIQPFLDAFD 288
            S+ VY+GKL P   N+L+ +LL CCG + K  R  DP+T+  K FG  T+   +AAA++V++LN + LAGQ I+VKVGKK+  +++ FL   D
Sbjct:  135 SINVYVGKLKPETDNSLVQELLTCCGRVEKWNRAVDPSTDLPKAFGFCTYHNAQAAAISVQLLNDLELAGQPILVKVGKKEQPSLEAFLSPKD 227
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BLAST of mRNA_P-wetherbeei_contig1843.1.1 vs. uniprot
Match: A0A835Z4I4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4I4_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.770e-12
Identity = 41/87 (47.13%), Postives = 53/87 (60.92%), Query Frame = 1 
Query:   13 VGVYIGKLDPNVSNNLLADLLACCGGLSKLARVPDPATNALKPFGIATFATPRAAAVAVRVLNGMPLAGQEIVVKVGKKDVDAIQPF 273
            V VY+GKL   V    + ++L   G L+K  R  D  TN LK FG AT+ T   A VAV+VLNG  + G+E++VKVGKK+  AI  F
Sbjct:   38 VTVYVGKLADAVEPQYVGEVLRSVGRLAKWNRANDAETNKLKHFGFATYRTAEEADVAVKVLNGQKVMGEELLVKVGKKEQAAIDEF 124
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BLAST of mRNA_P-wetherbeei_contig1843.1.1 vs. uniprot
Match: C1E996_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E996_MICCC)

HSP 1 Score: 65.5 bits (158), Expect = 1.120e-9
Identity = 32/82 (39.02%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:    1 ASQSVGVYIGKLDPNVSNNLLADLLACCGGLSKLARVPDPATNALKPFGIATFATPRAAAVAVRVLNGMPLAGQEIVVKVGK 246
            A +S  VY+GK+ PNV + L+  LL  CG +    RV DP  +  K FG   FA       A+R+L+G P+AG+E+++ V +
Sbjct:   39 AKESTTVYVGKIPPNVDDALVRKLLDACGEVRSWKRVMDPENDTPKRFGFCEFADAEGVLRAMRILDGFPVAGEELLLNVNQ 120
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BLAST of mRNA_P-wetherbeei_contig1843.1.1 vs. uniprot
Match: A0A7S0S4K1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S4K1_9CHLO)

HSP 1 Score: 64.3 bits (155), Expect = 2.070e-9
Identity = 36/99 (36.36%), Postives = 55/99 (55.56%), Query Frame = 1 
Query:    7 QSVGVYIGKLDPNVSNNLLADLLACCGGLSKLARVPDPATNALKPFGIATFATPRAAAVAVRVLNGMPLAGQEIVVKVGKKDVDAIQPFLDAFDAAPAA 303
            +S  VY+GK+  +V ++++  LL  CG L    R  DP T  LK FG A F        A+R+LNG+ L GQE+++K       A Q +++ ++A  AA
Sbjct:   85 KSTTVYVGKIAASVEDSVVRHLLEACGPLKSWKRSEDPDTKQLKGFGFAEFTDAEGVCRAIRLLNGLKLDGQELLIKGNT----ATQRYVEHYEADKAA 179
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BLAST of mRNA_P-wetherbeei_contig1843.1.1 vs. uniprot
Match: A0A7S0I8P8_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0I8P8_MICPS)

HSP 1 Score: 62.4 bits (150), Expect = 5.860e-9
Identity = 30/82 (36.59%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:    1 ASQSVGVYIGKLDPNVSNNLLADLLACCGGLSKLARVPDPATNALKPFGIATFATPRAAAVAVRVLNGMPLAGQEIVVKVGK 246
            A +S  VY+GK+ P+V + L+ +LL  CG +    RV DP  +  K FG   FA       A+R+L+G P+A +E+++ V +
Sbjct:   83 AKESTTVYVGKIPPSVDDALVRELLDACGEVRSWKRVMDPENDTPKRFGFCEFADAEGVLRAMRILDGFPVANEELLLNVNQ 164
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BLAST of mRNA_P-wetherbeei_contig1843.1.1 vs. uniprot
Match: A0A7S0XBF3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0XBF3_9CHLO)

HSP 1 Score: 61.6 bits (148), Expect = 2.310e-8
Identity = 31/80 (38.75%), Postives = 44/80 (55.00%), Query Frame = 1 
Query:    7 QSVGVYIGKLDPNVSNNLLADLLACCGGLSKLARVPDPATNALKPFGIATFATPRAAAVAVRVLNGMPLAGQEIVVKVGK 246
            QS  VY+GK+   V ++L+  LL  CGG+    RV DP  N  K FG   F        A+R+L+G PL G E+++ V +
Sbjct:  121 QSTTVYVGKIPAGVRDSLVRALLGACGGVRSWKRVMDPEKNTPKRFGFCEFDDAEGVLRAMRILDGFPLLGDELLLNVNQ 200
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BLAST of mRNA_P-wetherbeei_contig1843.1.1 vs. uniprot
Match: A0A7S1X6P2_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X6P2_9CHLO)

HSP 1 Score: 58.2 bits (139), Expect = 8.160e-8
Identity = 31/95 (32.63%), Postives = 48/95 (50.53%), Query Frame = 1 
Query:    1 ASQSVGVYIGKLDPNVSNNLLADLLACCGGLSKLARVPDPATNALKPFGIATFATPRAAAVAVRVLNGMPLAGQEIVVKVGKKDVDAIQPFLDAF 285
            A +S  +Y+GK+   V+++LL  LL CCG +    R  DP T   K FG             +R+LNG  + GQ ++VK  +    A Q ++D +
Sbjct:   18 APESTTIYVGKIAATVTDDLLKQLLECCGKVKSWTRQADPETKQPKAFGFCDMEDAEGVMRCLRILNGREVHGQALLVKANQ----ATQKYVDYY 108
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BLAST of mRNA_P-wetherbeei_contig1843.1.1 vs. uniprot
Match: D8U2W0_VOLCA (RRM domain-containing protein (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U2W0_VOLCA)

HSP 1 Score: 55.1 bits (131), Expect = 2.850e-7
Identity = 29/79 (36.71%), Postives = 44/79 (55.70%), Query Frame = 1 
Query:    1 ASQSVGVYIGKLDPNVSNNLLADLLACCGGLSKLARVPDPATNALKPFGIATFATPRAAAVAVRVLNGMPLAGQEIVVK 237
            A +S  VY+GK+  +V ++++  LL  CG +    R  DP T   K FG   F        A+R+LNG+ L GQE+++K
Sbjct:    4 AEKSTTVYVGKIASSVPDSVVRTLLDACGRVKSWKRQMDPDTKQPKGFGFCEFEDAEGVLRAMRLLNGLKLDGQELLLK 82
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BLAST of mRNA_P-wetherbeei_contig1843.1.1 vs. uniprot
Match: A0A835XM43_9CHLO (RRM domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XM43_9CHLO)

HSP 1 Score: 57.4 bits (137), Expect = 5.920e-7
Identity = 33/101 (32.67%), Postives = 52/101 (51.49%), Query Frame = 1 
Query:    1 ASQSVGVYIGKLDPNVSNNLLADLLACCGGLSKLARVPDPATNALKPFGIATFATPRAAAVAVRVLNGMPLAGQEIVVKVGKKDVDAIQPFLDAFDAAPAA 303
            A +S  VY+GK+  +V ++++  LL  CG +    R  DP T   K FG   F        A+R+LNG+ + GQE+++K       A Q + + +DA   A
Sbjct:   60 AEKSTTVYVGKIASSVPDSIVRHLLDACGKVKSWKRQQDPDTKQPKGFGFCEFEDAEGVLRALRLLNGVKIDGQELLLKCNA----ATQKYTEQYDAQRTA 156
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BLAST of mRNA_P-wetherbeei_contig1843.1.1 vs. uniprot
Match: A0A835XLC6_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XLC6_9CHLO)

HSP 1 Score: 57.4 bits (137), Expect = 7.400e-7
Identity = 33/101 (32.67%), Postives = 52/101 (51.49%), Query Frame = 1 
Query:    1 ASQSVGVYIGKLDPNVSNNLLADLLACCGGLSKLARVPDPATNALKPFGIATFATPRAAAVAVRVLNGMPLAGQEIVVKVGKKDVDAIQPFLDAFDAAPAA 303
            A +S  VY+GK+  +V ++++  LL  CG +    R  DP T   K FG   F        A+R+LNG+ + GQE+++K       A Q + + +DA   A
Sbjct:   60 AEKSTTVYVGKIASSVPDSIVRHLLDACGKVKSWKRQQDPDTKQPKGFGFCEFEDAEGVLRALRLLNGVKIDGQELLLKCNA----ATQKYTEQYDAQRTA 156
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1843.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FJT5_ECTSI2.100e-1846.24Splicing factor PWI domain-containing protein / RN... [more]
A0A835Z4I4_9STRA1.770e-1247.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
C1E996_MICCC1.120e-939.02Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A0A7S0S4K1_9CHLO2.070e-936.36Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A7S0I8P8_MICPS5.860e-936.59Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A7S0XBF3_9CHLO2.310e-838.75Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A7S1X6P2_9CHLO8.160e-832.63Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
D8U2W0_VOLCA2.850e-736.71RRM domain-containing protein (Fragment) n=1 Tax=V... [more]
A0A835XM43_9CHLO5.920e-732.67RRM domain-containing protein n=1 Tax=Edaphochlamy... [more]
A0A835XLC6_9CHLO7.400e-732.67Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1843contigP-wetherbeei_contig1843:565..987 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FJT5
Preferred nameSNU71
PFAMsPWI,RRM_1
Model size423
Max annot lvl2759|Eukaryota
KEGG koko:K12822
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005685,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0010941,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0030532,GO:0031323,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048024,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1903311,GO:1990904
Exons1
Evalue3.44e-19
EggNOG OGsKOG2253@1|root,KOG2253@2759|Eukaryota
DescriptionmRNA processing
Cds size423
COG categoryS
BRITEko00000,ko00001,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186145.7036345-CDS-P-wetherbeei_contig1843:564..9871683186145.7036345-CDS-P-wetherbeei_contig1843:564..987Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1843 565..987 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1843.1.1prot_P-wetherbeei_contig1843.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1843 565..987 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1843.1.1

>prot_P-wetherbeei_contig1843.1.1 ID=prot_P-wetherbeei_contig1843.1.1|Name=mRNA_P-wetherbeei_contig1843.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=141bp
ASQSVGVYIGKLDPNVSNNLLADLLACCGGLSKLARVPDPATNALKPFGI
ATFATPRAAAVAVRVLNGMPLAGQEIVVKVGKKDVDAIQPFLDAFDAAPA
AVAAAKAAAAAEAAAAEESEAADVMAVSGTTVSADDSGAAA
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mRNA from alignment at P-wetherbeei_contig1843:565..987-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1843.1.1 ID=mRNA_P-wetherbeei_contig1843.1.1|Name=mRNA_P-wetherbeei_contig1843.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig1843:565..987- (Phaeothamnion wetherbeei SAG_119_79)
GCGAGCCAGTCGGTGGGGGTGTACATCGGCAAGCTCGACCCCAACGTCAG
CAACAACCTTCTGGCGGACCTGCTCGCCTGCTGCGGCGGGCTCAGCAAGC
TGGCGAGGGTGCCCGATCCGGCGACCAACGCCCTGAAGCCGTTCGGCATC
GCCACGTTCGCGACGCCGCGGGCGGCGGCCGTGGCGGTGCGCGTGCTCAA
CGGCATGCCGCTCGCCGGGCAAGAAATTGTTGTCAAGGTGGGAAAGAAGG
ACGTGGATGCCATCCAGCCGTTCCTTGACGCCTTTGACGCCGCCCCGGCC
GCCGTCGCCGCCGCCAAAGCCGCCGCCGCCGCTGAGGCTGCCGCTGCCGA
AGAATCGGAAGCCGCTGATGTCATGGCCGTTAGCGGCACCACGGTTTCTG
CGGACGACAGCGGCGCTGCTGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1843:565..987-

>mRNA_P-wetherbeei_contig1843.1.1 ID=mRNA_P-wetherbeei_contig1843.1.1|Name=mRNA_P-wetherbeei_contig1843.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig1843:565..987- (Phaeothamnion wetherbeei SAG_119_79)
GCGAGCCAGTCGGTGGGGGTGTACATCGGCAAGCTCGACCCCAACGTCAG
CAACAACCTTCTGGCGGACCTGCTCGCCTGCTGCGGCGGGCTCAGCAAGC
TGGCGAGGGTGCCCGATCCGGCGACCAACGCCCTGAAGCCGTTCGGCATC
GCCACGTTCGCGACGCCGCGGGCGGCGGCCGTGGCGGTGCGCGTGCTCAA
CGGCATGCCGCTCGCCGGGCAAGAAATTGTTGTCAAGGTGGGAAAGAAGG
ACGTGGATGCCATCCAGCCGTTCCTTGACGCCTTTGACGCCGCCCCGGCC
GCCGTCGCCGCCGCCAAAGCCGCCGCCGCCGCTGAGGCTGCCGCTGCCGA
AGAATCGGAAGCCGCTGATGTCATGGCCGTTAGCGGCACCACGGTTTCTG
CGGACGACAGCGGCGCTGCTGCT
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