mRNA_P-wetherbeei_contig18429.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18429.1.1
Unique NamemRNA_P-wetherbeei_contig18429.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18429.1.1 vs. uniprot
Match: A0A7S2C711_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C711_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 5.820e-22
Identity = 47/90 (52.22%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:    4 LDMAMELFQAADQFGAERLKRLCEHKMLASINVDNAXXXXXXXXXXXXXXXXXXXXXXXXXHFDAVSKTQCFEDMGRTNNDLLFEIIHNR 273
            LD+AMELFQ AD FG ERLK++CE+KMLASINVDNA                         +FD V+KT CFE+MGRTN +L+FEI+  R
Sbjct:  131 LDIAMELFQTADHFGVERLKKICEYKMLASINVDNAASIFHAADLHNAKSLREKCLNFILANFDPVTKTACFEEMGRTNVELVFEILQKR 220
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BLAST of mRNA_P-wetherbeei_contig18429.1.1 vs. uniprot
Match: A0A7S2BYV7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BYV7_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 6.000e-20
Identity = 61/90 (67.78%), Postives = 72/90 (80.00%), Query Frame = 1 
Query:    4 LDMAMELFQAADQFGAERLKRLCEHKMLASINVDNAXXXXXXXXXXXXXXXXXXXXXXXXXHFDAVSKTQCFEDMGRTNNDLLFEIIHNR 273
            LD+AMELFQAADQFG ERLK++CE KMLASINV+NA   XXXXXXXXXXXXXXX       +FD V+K+  FE+MGRTN +L+FEI+  R
Sbjct:  158 LDIAMELFQAADQFGVERLKKICESKMLASINVENAATIXXXXXXXXXXXXXXXCLNFVLANFDPVTKSASFEEMGRTNVELVFEILQKR 247
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BLAST of mRNA_P-wetherbeei_contig18429.1.1 vs. uniprot
Match: F0Y4D1_AURAN (BTB domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4D1_AURAN)

HSP 1 Score: 90.9 bits (224), Expect = 2.090e-19
Identity = 64/91 (70.33%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:    1 ALDMAMELFQAADQFGAERLKRLCEHKMLASINVDNAXXXXXXXXXXXXXXXXXXXXXXXXXHFDAVSKTQCFEDMGRTNNDLLFEIIHNR 273
            ALD+AMELFQAADQFG ERLKR+CE KMLASI+V+NA  XXXXXXXXXXXXXXXXX      +FDAV++T  FE+MGR N +L+FEI+ +R
Sbjct:  389 ALDIAMELFQAADQFGVERLKRMCESKMLASIHVENAATXXXXXXXXXXXXXXXXXLNFILTNFDAVTRTASFEEMGRVNVELVFEILKSR 479
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BLAST of mRNA_P-wetherbeei_contig18429.1.1 vs. uniprot
Match: A0A7S2SJA3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJA3_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 4.370e-19
Identity = 46/90 (51.11%), Postives = 56/90 (62.22%), Query Frame = 1 
Query:    4 LDMAMELFQAADQFGAERLKRLCEHKMLASINVDNAXXXXXXXXXXXXXXXXXXXXXXXXXHFDAVSKTQCFEDMGRTNNDLLFEIIHNR 273
            ++ AMELFQAAD+FG ERLKR+CE+ ML+SIN+DNA                         +FDAV KTQ FED+GRTN DL+FEI   R
Sbjct:  452 VEEAMELFQAADRFGVERLKRMCENAMLSSINIDNAASILLAADLYDATSLREKCLLFIISNFDAVIKTQSFEDLGRTNVDLMFEIFQKR 541
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BLAST of mRNA_P-wetherbeei_contig18429.1.1 vs. uniprot
Match: A0A7S2XZ71_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ71_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 4.840e-19
Identity = 64/90 (71.11%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:    4 LDMAMELFQAADQFGAERLKRLCEHKMLASINVDNAXXXXXXXXXXXXXXXXXXXXXXXXXHFDAVSKTQCFEDMGRTNNDLLFEIIHNR 273
            LD+AMELFQAADQFG ERLK++CE KMLASI+++NA XXXXXXXXXXXXXXXXXX      +FDAV+KT  FE+MGRT+ DL+FEI+  R
Sbjct:  299 LDIAMELFQAADQFGVERLKKMCEGKMLASISIENAAXXXXXXXXXXXXXXXXXXLNFILANFDAVTKTPDFEEMGRTSIDLVFEILRQR 388
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BLAST of mRNA_P-wetherbeei_contig18429.1.1 vs. uniprot
Match: A0A0G4FIC0_VITBC (BTB domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FIC0_VITBC)

HSP 1 Score: 89.7 bits (221), Expect = 5.830e-19
Identity = 46/91 (50.55%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:    1 ALDMAMELFQAADQFGAERLKRLCEHKMLASINVDNAXXXXXXXXXXXXXXXXXXXXXXXXXHFDAVSKTQCFEDMGRTNNDLLFEIIHNR 273
            +LDMAM+LF AADQFG ERLK+LCE K+L SI++DNA                         +FDAVSKTQ FE+MGR N +L+FEI+  R
Sbjct:  430 SLDMAMDLFVAADQFGVERLKKLCERKILTSIDIDNAATILQAADLHTAVSLRQSCFDFILRNFDAVSKTQSFEEMGRANVELVFEILKRR 520
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BLAST of mRNA_P-wetherbeei_contig18429.1.1 vs. uniprot
Match: A0A7S4A3I8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3I8_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 7.990e-19
Identity = 63/90 (70.00%), Postives = 73/90 (81.11%), Query Frame = 1 
Query:    4 LDMAMELFQAADQFGAERLKRLCEHKMLASINVDNAXXXXXXXXXXXXXXXXXXXXXXXXXHFDAVSKTQCFEDMGRTNNDLLFEIIHNR 273
            LDMAMELFQAADQFG ERLKR+CE +ML SI+V+NA  XXXXXXXXXXXXXXXXX      +FDAV++T  FE+MGR N DL+FEI+  R
Sbjct:  430 LDMAMELFQAADQFGVERLKRMCESRMLGSIHVENAATXXXXXXXXXXXXXXXXXLAFVLANFDAVTRTSAFEEMGRVNVDLVFEILKAR 519
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BLAST of mRNA_P-wetherbeei_contig18429.1.1 vs. uniprot
Match: A0A7S2GCG7_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2GCG7_9DINO)

HSP 1 Score: 84.7 bits (208), Expect = 1.690e-18
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:    1 ALDMAMELFQAADQFGAERLKRLCEHKMLASINVDNAXXXXXXXXXXXXXXXXXXXXXXXXXHFDAVSKTQCFEDMGRTNNDLLFEIIHNR 273
            ++D+AM+LF AADQFG ERLKRLCE K+L SIN+D+                          +FDAVSKT  FE+MGR+N +L+FE++  R
Sbjct:  101 SMDIAMDLFVAADQFGVERLKRLCEKKILVSINIDSVATILQAANMHIAHGLRQSCMDFILRNFDAVSKTPAFEEMGRSNVELVFEVLKRR 191
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BLAST of mRNA_P-wetherbeei_contig18429.1.1 vs. uniprot
Match: A0A7S3JNQ4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JNQ4_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.950e-18
Identity = 43/90 (47.78%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:    4 LDMAMELFQAADQFGAERLKRLCEHKMLASINVDNAXXXXXXXXXXXXXXXXXXXXXXXXXHFDAVSKTQCFEDMGRTNNDLLFEIIHNR 273
            LD+AM+LFQAAD+FG +RLK++CE KMLASINV+NA                         HFD V++T  FEDMGR+N DL+F+++  R
Sbjct:  457 LDIAMDLFQAADRFGVDRLKKICESKMLASINVENACSIFHAADRYMAKSLRDRSLSFILHHFDDVTQTPAFEDMGRSNVDLVFDVLRAR 546
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BLAST of mRNA_P-wetherbeei_contig18429.1.1 vs. uniprot
Match: A0A7S1SDQ4_ALECA (Hypothetical protein n=3 Tax=Alveolata TaxID=33630 RepID=A0A7S1SDQ4_ALECA)

HSP 1 Score: 86.7 bits (213), Expect = 4.740e-18
Identity = 45/90 (50.00%), Postives = 56/90 (62.22%), Query Frame = 1 
Query:    4 LDMAMELFQAADQFGAERLKRLCEHKMLASINVDNAXXXXXXXXXXXXXXXXXXXXXXXXXHFDAVSKTQCFEDMGRTNNDLLFEIIHNR 273
            LD+AM+LF AADQFG ERLKRLCE K+L SINVD+A                         +FDAVSKT  FE+MGR+N +L+FE++  R
Sbjct:  301 LDIAMDLFIAADQFGVERLKRLCEKKILVSINVDSAPTILQAANMHIAHGLRQSCMDFILRNFDAVSKTPAFEEMGRSNVELVFEVLKRR 390
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18429.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2C711_9STRA5.820e-2252.22Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2BYV7_9STRA6.000e-2067.78Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
F0Y4D1_AURAN2.090e-1970.33BTB domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A7S2SJA3_9STRA4.370e-1951.11Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2XZ71_9STRA4.840e-1971.11Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0G4FIC0_VITBC5.830e-1950.55BTB domain-containing protein n=2 Tax=Vitrella bra... [more]
A0A7S4A3I8_9STRA7.990e-1970.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2GCG7_9DINO1.690e-1846.15Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A7S3JNQ4_9STRA2.950e-1847.78Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S1SDQ4_ALECA4.740e-1850.00Hypothetical protein n=3 Tax=Alveolata TaxID=33630... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18429contigP-wetherbeei_contig18429:348..623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009034935.1
Preferred namelztr1
PFAMsBTB,F-box-like,Jacalin,Kelch_1,Kelch_2,Kelch_3,Kelch_4,PAS_9
Model size276
Max annot lvl2759|Eukaryota
KEGG koko:K12115,ko:K12116,ko:K12117
KEGG Pathwayko04712,map04712
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0007600,GO:0008150,GO:0015030,GO:0016604,GO:0019233,GO:0031974,GO:0031981,GO:0032501,GO:0042752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0050789,GO:0050877,GO:0065007,GO:0070013
Exons1
Evalue2.79e-19
EggNOG OGs2CMFB@1|root,2QQ74@2759|Eukaryota
DescriptionGalactose oxidase, central domain
Cds size267
COG categoryS
BRITEko00000,ko00001,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186145.6326551-UTR-P-wetherbeei_contig18429:347..3561683186145.6326551-UTR-P-wetherbeei_contig18429:347..356Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18429 348..356 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186145.6437683-CDS-P-wetherbeei_contig18429:356..6231683186145.6437683-CDS-P-wetherbeei_contig18429:356..623Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18429 357..623 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18429.1.1prot_P-wetherbeei_contig18429.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18429 357..623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18429.1.1

>prot_P-wetherbeei_contig18429.1.1 ID=prot_P-wetherbeei_contig18429.1.1|Name=mRNA_P-wetherbeei_contig18429.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=89bp
MAMELFQAADQFGAERLKRLCEHKMLASINVDNAASIFHAADHHNAKSLR
EKCLNFILAHFDAVSKTQCFEDMGRTNNDLLFEIIHNR*
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mRNA from alignment at P-wetherbeei_contig18429:348..623+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18429.1.1 ID=mRNA_P-wetherbeei_contig18429.1.1|Name=mRNA_P-wetherbeei_contig18429.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig18429:348..623+ (Phaeothamnion wetherbeei SAG_119_79)
GCACTCGATATGGCGATGGAATTGTTCCAGGCGGCGGACCAGTTCGGCGC
AGAGCGGCTCAAACGGCTGTGCGAGCACAAGATGCTGGCGTCCATCAACG
TGGACAACGCCGCCAGCATCTTCCATGCTGCAGACCACCACAATGCCAAA
TCGCTGCGGGAGAAGTGCCTCAACTTCATCCTGGCGCACTTCGATGCCGT
CAGCAAGACACAGTGCTTCGAGGACATGGGCCGCACCAACAACGACCTTC
TCTTCGAGATCATCCACAACCGATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18429:348..623+

>mRNA_P-wetherbeei_contig18429.1.1 ID=mRNA_P-wetherbeei_contig18429.1.1|Name=mRNA_P-wetherbeei_contig18429.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig18429:348..623+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGATGGAATTGTTCCAGGCGGCGGACCAGTTCGGCGCAGAGCGGCT
CAAACGGCTGTGCGAGCACAAGATGCTGGCGTCCATCAACGTGGACAACG
CCGCCAGCATCTTCCATGCTGCAGACCACCACAATGCCAAATCGCTGCGG
GAGAAGTGCCTCAACTTCATCCTGGCGCACTTCGATGCCGTCAGCAAGAC
ACAGTGCTTCGAGGACATGGGCCGCACCAACAACGACCTTCTCTTCGAGA
TCATCCACAACCGATGA
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