mRNA_P-wetherbeei_contig1842.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1842.3.1
Unique NamemRNA_P-wetherbeei_contig1842.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1842.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1842contigP-wetherbeei_contig1842:4956..6565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1035
Hectar predicted targeting categoryother localisation
Exons3
Cds size624
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186145.502295-UTR-P-wetherbeei_contig1842:4955..53651683186145.502295-UTR-P-wetherbeei_contig1842:4955..5365Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1842 4956..5365 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186145.5117638-CDS-P-wetherbeei_contig1842:5365..55661683186145.5117638-CDS-P-wetherbeei_contig1842:5365..5566Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1842 5366..5566 -
1683186145.5211787-CDS-P-wetherbeei_contig1842:5928..63171683186145.5211787-CDS-P-wetherbeei_contig1842:5928..6317Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1842 5929..6317 -
1683186145.530792-CDS-P-wetherbeei_contig1842:6531..65651683186145.530792-CDS-P-wetherbeei_contig1842:6531..6565Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1842 6532..6565 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1842.3.1prot_P-wetherbeei_contig1842.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1842 5366..6565 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1842.3.1

>prot_P-wetherbeei_contig1842.3.1 ID=prot_P-wetherbeei_contig1842.3.1|Name=mRNA_P-wetherbeei_contig1842.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=208bp
FDGFAPQPSDVEDRYGDREAPPDFDRDSGDDGAPISSSPSAGGAPPPAGD
SASGSGGGGDASAAADNLGGSAGRPFPLPLCAAVAVFNGMQGGLIGAFVG
GATGLAKAASHGVRGADLRLHARGGAVSYGASFAGFLATFEGTKCVSSAL
RGGKRDVLNTAIAGFASGAVAAVARRQVRHAVPQGVAVAVGAVALEVFFN
IGSGSSR*
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mRNA from alignment at P-wetherbeei_contig1842:4956..6565-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1842.3.1 ID=mRNA_P-wetherbeei_contig1842.3.1|Name=mRNA_P-wetherbeei_contig1842.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1610bp|location=Sequence derived from alignment at P-wetherbeei_contig1842:4956..6565- (Phaeothamnion wetherbeei SAG_119_79)
TTCGATGGCTTTGCGCCACAACCTTCGGACGTGGGTGAGTTGGGATCGCT
CGTAGAATGGAGGTTGCAACTAACTCTGCTGCCGCCCATAATCGTCGAAT
TATCTGCTTTGCTGCGAATGCGGTCGGATTGCACTCTCAGGTTTTCCCTT
GGGGGCCATGTTCATGTTTGGAGAAGCTTCGGCAAGAATATCTTCATCCT
GCGTTGTGCTTCCTCTTGCGTGCAAATCCTTGCTTCGTAACGCCGCAGAG
GATCGTTACGGTGACCGCGAGGCACCGCCGGACTTCGACCGCGACAGCGG
CGACGACGGTGCTCCCATCTCGTCGTCGCCGTCGGCGGGAGGGGCGCCAC
CACCCGCCGGCGACTCTGCGAGCGGCAGCGGCGGCGGCGGGGACGCCTCC
GCCGCCGCGGACAACCTCGGAGGGAGTGCGGGCCGACCGTTCCCGCTCCC
TCTGTGCGCCGCCGTCGCCGTCTTCAACGGCATGCAGGGCGGCCTGATCG
GCGCCTTCGTCGGCGGCGCCACGGGGCTCGCCAAGGCCGCCTCCCATGGC
GTCCGCGGCGCCGACCTGCGGCTGCACGCGCGCGGTGGAGCTGTCTCGTA
CGGTGCTTCTTTCGCCGGATTTTTGGCGACGTTTGAGGTGAGAGAATAAG
GTACGAATGGAGGAAAAGAGTATAAGAAGGGAGAGAAGGGCGGTGGTCGC
GCAAGTATCAAGGTGTAAGTAAACCCCTTTGCTTCTGGAAGGTGTTGAGG
CGACCGAGGCGGGAAGGGTTCGCTTAGAATTTTTATTTCGTTTGGAAGTA
CCAGATGCGCGACAAGCACGTCCTTGCCGGAAAATTTCTTGGCACTTTCT
CGAAGCGGCGAGGGGCTTTTATTCTCGGTGCATGCGTGCAGAGCATCGAT
AAACTGCCCCAATCCCCCCATTTTTTCGTATTCCCCCTTCCTTCTTTTTT
GTTTGGTCTACGATTGGTTTCGGCCCTGCTCTCCCGCGGCGGTCGGCAGG
GCACGAAGTGCGTGTCGTCAGCGCTGCGTGGCGGCAAGCGCGACGTTCTC
AACACGGCCATCGCCGGCTTTGCGTCTGGTGCCGTCGCCGCCGTGGCGCG
GCGGCAGGTGCGGCACGCCGTCCCGCAGGGCGTCGCGGTCGCGGTGGGCG
CCGTCGCGTTGGAGGTATTTTTCAACATCGGGAGCGGTAGCAGCAGATGA
TCAGGGCTGCCGGCGCGACAGCGGCTACAGCAGCGACGGCGGCGGCCTCG
GCGGCGGCGGTGGCTGCAGCAGCGATTGCGGTTGCAAAGGTCACCAAAGT
GCCAGACGAAGGCGGTGACGGTGGCGCTGGCATTCAGACGGCGGCGGCGA
CGGCAGCGGCGACGGGACGCTGACTGCAGCGCTGGCGAGGAGCGCGCTCT
GCTTTGCTGGCACTGCGGTCATCGCCATGGCGCCAGCGACAGGGTGCATG
CGGGCGACTGCTGCTGCGGCGGCGGCTGTTCACTGATGGAGGTATGCGTG
GTTTGGCCGGACCGTGGGGGCGGCTGATGCACTGACGCGGCTAAGTTTCT
TTGAGGGAAAGGAAAGGCCGCTGCGTACACAAATGTAAGAGCAATTTCGA
TGTCGACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1842:4956..6565-

>mRNA_P-wetherbeei_contig1842.3.1 ID=mRNA_P-wetherbeei_contig1842.3.1|Name=mRNA_P-wetherbeei_contig1842.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=624bp|location=Sequence derived from alignment at P-wetherbeei_contig1842:4956..6565- (Phaeothamnion wetherbeei SAG_119_79)
TTCGATGGCTTTGCGCCACAACCTTCGGACGTGGAGGATCGTTACGGTGA
CCGCGAGGCACCGCCGGACTTCGACCGCGACAGCGGCGACGACGGTGCTC
CCATCTCGTCGTCGCCGTCGGCGGGAGGGGCGCCACCACCCGCCGGCGAC
TCTGCGAGCGGCAGCGGCGGCGGCGGGGACGCCTCCGCCGCCGCGGACAA
CCTCGGAGGGAGTGCGGGCCGACCGTTCCCGCTCCCTCTGTGCGCCGCCG
TCGCCGTCTTCAACGGCATGCAGGGCGGCCTGATCGGCGCCTTCGTCGGC
GGCGCCACGGGGCTCGCCAAGGCCGCCTCCCATGGCGTCCGCGGCGCCGA
CCTGCGGCTGCACGCGCGCGGTGGAGCTGTCTCGTACGGTGCTTCTTTCG
CCGGATTTTTGGCGACGTTTGAGGGCACGAAGTGCGTGTCGTCAGCGCTG
CGTGGCGGCAAGCGCGACGTTCTCAACACGGCCATCGCCGGCTTTGCGTC
TGGTGCCGTCGCCGCCGTGGCGCGGCGGCAGGTGCGGCACGCCGTCCCGC
AGGGCGTCGCGGTCGCGGTGGGCGCCGTCGCGTTGGAGGTATTTTTCAAC
ATCGGGAGCGGTAGCAGCAGATGA
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