mRNA_P-wetherbeei_contig18407.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18407.1.1
Unique NamemRNA_P-wetherbeei_contig18407.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18407.1.1 vs. uniprot
Match: D7G4B1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4B1_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 2.200e-33
Identity = 57/66 (86.36%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:    4 MSYLLPHLRSGWAVDQAILNEEDRVVVLRFGHDYDPTCMQMDEVLAGIAEDVKNFAAIYMVDISEV 201
            MSYLLPHLR+GWAVDQAI+NEE+RVV LRFGHD+D TCMQMDEVLAGIAEDVKNF AIY+VD+SEV
Sbjct:    1 MSYLLPHLRTGWAVDQAIINEEERVVCLRFGHDHDVTCMQMDEVLAGIAEDVKNFCAIYVVDVSEV 66
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BLAST of mRNA_P-wetherbeei_contig18407.1.1 vs. uniprot
Match: H3G9C0_PHYRM (Uncharacterized protein n=32 Tax=Oomycota TaxID=4762 RepID=H3G9C0_PHYRM)

HSP 1 Score: 119 bits (298), Expect = 4.430e-33
Identity = 57/66 (86.36%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:    4 MSYLLPHLRSGWAVDQAILNEEDRVVVLRFGHDYDPTCMQMDEVLAGIAEDVKNFAAIYMVDISEV 201
            MSYLLPHL SGWAVDQAILNE DRVVV+RFGHD+D TCMQMDEVL G+AEDVKNFAAIY+VDI+EV
Sbjct:    1 MSYLLPHLESGWAVDQAILNEGDRVVVIRFGHDHDSTCMQMDEVLCGVAEDVKNFAAIYVVDITEV 66
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BLAST of mRNA_P-wetherbeei_contig18407.1.1 vs. uniprot
Match: A0A7S2HED9_9STRA (Hypothetical protein n=3 Tax=Dictyochophyceae TaxID=39119 RepID=A0A7S2HED9_9STRA)

HSP 1 Score: 119 bits (297), Expect = 6.470e-33
Identity = 55/66 (83.33%), Postives = 61/66 (92.42%), Query Frame = 1 
Query:    4 MSYLLPHLRSGWAVDQAILNEEDRVVVLRFGHDYDPTCMQMDEVLAGIAEDVKNFAAIYMVDISEV 201
            MSYLLPHL++GW+VDQAILNEEDRVVV RFGHDYDP CMQMDEVL GI +DVKNFA IY++DISEV
Sbjct:    2 MSYLLPHLQTGWSVDQAILNEEDRVVVCRFGHDYDPVCMQMDEVLCGIVDDVKNFAVIYVIDISEV 67
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BLAST of mRNA_P-wetherbeei_contig18407.1.1 vs. uniprot
Match: A0A0M0JAP0_9EUKA (Thioredoxin-like protein 4a n=2 Tax=Prymnesiales TaxID=73028 RepID=A0A0M0JAP0_9EUKA)

HSP 1 Score: 118 bits (296), Expect = 8.910e-33
Identity = 57/66 (86.36%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:    4 MSYLLPHLRSGWAVDQAILNEEDRVVVLRFGHDYDPTCMQMDEVLAGIAEDVKNFAAIYMVDISEV 201
            MSYL+PHL +GWAVDQAIL+EEDRVVVLRFGHDYDPTCMQMDEVL GIAE VKN+A IY+VDISEV
Sbjct:    1 MSYLMPHLNTGWAVDQAILSEEDRVVVLRFGHDYDPTCMQMDEVLYGIAELVKNYAVIYLVDISEV 66
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BLAST of mRNA_P-wetherbeei_contig18407.1.1 vs. uniprot
Match: A0A5D6XYK2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYK2_9STRA)

HSP 1 Score: 120 bits (300), Expect = 2.280e-32
Identity = 55/67 (82.09%), Postives = 64/67 (95.52%), Query Frame = 1 
Query:    1 SMSYLLPHLRSGWAVDQAILNEEDRVVVLRFGHDYDPTCMQMDEVLAGIAEDVKNFAAIYMVDISEV 201
            +MSYLLPHL SGWAVDQAILNE DRVVV+RFGHD+DPTCMQMDEVL+G+AEDVKNFA +Y+VDI++V
Sbjct:   86 AMSYLLPHLESGWAVDQAILNEGDRVVVIRFGHDHDPTCMQMDEVLSGVAEDVKNFAVVYVVDITQV 152
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BLAST of mRNA_P-wetherbeei_contig18407.1.1 vs. uniprot
Match: A0A482V1I6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482V1I6_9ARCH)

HSP 1 Score: 116 bits (291), Expect = 5.130e-32
Identity = 55/66 (83.33%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:    4 MSYLLPHLRSGWAVDQAILNEEDRVVVLRFGHDYDPTCMQMDEVLAGIAEDVKNFAAIYMVDISEV 201
            MSYLLPHL SGWAVDQAILNEE++VVV+RFGHD+DPTCM+MDEVL  +AEDVKNFA IY+VDISEV
Sbjct:    1 MSYLLPHLHSGWAVDQAILNEENKVVVIRFGHDWDPTCMEMDEVLFHLAEDVKNFAVIYLVDISEV 66
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BLAST of mRNA_P-wetherbeei_contig18407.1.1 vs. uniprot
Match: A0A812WHX6_SYMMI (YLS8 protein n=3 Tax=Sar TaxID=2698737 RepID=A0A812WHX6_SYMMI)

HSP 1 Score: 116 bits (290), Expect = 7.280e-32
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    4 MSYLLPHLRSGWAVDQAILNEEDRVVVLRFGHDYDPTCMQMDEVLAGIAEDVKNFAAIYMVDISEV 201
            MSYLLPHL SGWAVDQAILNEEDRVVV+RFGHD+D TCMQMDE+L  IA+DVKNFA IY VDI+EV
Sbjct:    1 MSYLLPHLNSGWAVDQAILNEEDRVVVIRFGHDWDTTCMQMDEILCNIADDVKNFAVIYCVDITEV 66
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BLAST of mRNA_P-wetherbeei_contig18407.1.1 vs. uniprot
Match: A0A835Z237_9STRA (Mitosis protein DIM1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z237_9STRA)

HSP 1 Score: 116 bits (290), Expect = 7.280e-32
Identity = 55/66 (83.33%), Postives = 61/66 (92.42%), Query Frame = 1 
Query:    4 MSYLLPHLRSGWAVDQAILNEEDRVVVLRFGHDYDPTCMQMDEVLAGIAEDVKNFAAIYMVDISEV 201
            M+YLL HL SGWAVDQAIL EE+R VV+RFGHDYDPTCMQMDEVL+GIAEDVKNFA IY+VDIS+V
Sbjct:    1 MAYLLAHLTSGWAVDQAILKEEERAVVIRFGHDYDPTCMQMDEVLSGIAEDVKNFAVIYVVDISQV 66
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BLAST of mRNA_P-wetherbeei_contig18407.1.1 vs. uniprot
Match: A0A6S8YQP1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8YQP1_9STRA)

HSP 1 Score: 114 bits (286), Expect = 2.950e-31
Identity = 53/66 (80.30%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    4 MSYLLPHLRSGWAVDQAILNEEDRVVVLRFGHDYDPTCMQMDEVLAGIAEDVKNFAAIYMVDISEV 201
            MSYLLPHLR+GWAVDQAILNEEDRVVV+RFGHDYDP CMQMDE L+ IA+ VKNF  +Y+VDI+EV
Sbjct:    1 MSYLLPHLRTGWAVDQAILNEEDRVVVVRFGHDYDPVCMQMDEALSKIADKVKNFCVVYLVDITEV 66
[Close]
BLAST of mRNA_P-wetherbeei_contig18407.1.1 vs. uniprot
Match: A0A7S3HQX3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQX3_9STRA)

HSP 1 Score: 114 bits (286), Expect = 4.270e-31
Identity = 52/67 (77.61%), Postives = 63/67 (94.03%), Query Frame = 1 
Query:    1 SMSYLLPHLRSGWAVDQAILNEEDRVVVLRFGHDYDPTCMQMDEVLAGIAEDVKNFAAIYMVDISEV 201
            +MSYLLPHLRSGWAVDQAILNEE +VV++RFGHD+D TCM+MDE+L GIA+DVKNF +IY+VD+SEV
Sbjct:   13 AMSYLLPHLRSGWAVDQAILNEESKVVLIRFGHDWDTTCMEMDEILFGIADDVKNFCSIYLVDLSEV 79
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18407.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4B1_ECTSI2.200e-3386.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
H3G9C0_PHYRM4.430e-3386.36Uncharacterized protein n=32 Tax=Oomycota TaxID=47... [more]
A0A7S2HED9_9STRA6.470e-3383.33Hypothetical protein n=3 Tax=Dictyochophyceae TaxI... [more]
A0A0M0JAP0_9EUKA8.910e-3386.36Thioredoxin-like protein 4a n=2 Tax=Prymnesiales T... [more]
A0A5D6XYK2_9STRA2.280e-3282.09Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A482V1I6_9ARCH5.130e-3283.33Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A812WHX6_SYMMI7.280e-3283.33YLS8 protein n=3 Tax=Sar TaxID=2698737 RepID=A0A81... [more]
A0A835Z237_9STRA7.280e-3283.33Mitosis protein DIM1-domain-containing protein n=1... [more]
A0A6S8YQP1_9STRA2.950e-3180.30Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3HQX3_9STRA4.270e-3177.61Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18407contigP-wetherbeei_contig18407:935..1135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog272952.HpaP809990
PFAMsDIM1
Model size201
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.23e-35
EggNOG OGsKOG3414@1|root,KOG3414@2759|Eukaryota,3QBSG@4776|Peronosporales
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-02_002020.1
DescriptionMitosis protein DIM1
Cds size198
COG categoryAD
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186145.073739-UTR-P-wetherbeei_contig18407:934..9371683186145.073739-UTR-P-wetherbeei_contig18407:934..937Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18407 935..937 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186145.083971-CDS-P-wetherbeei_contig18407:937..11351683186145.083971-CDS-P-wetherbeei_contig18407:937..1135Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18407 938..1135 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18407.1.1prot_P-wetherbeei_contig18407.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18407 938..1135 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18407.1.1

>prot_P-wetherbeei_contig18407.1.1 ID=prot_P-wetherbeei_contig18407.1.1|Name=mRNA_P-wetherbeei_contig18407.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=66bp
MSYLLPHLRSGWAVDQAILNEEDRVVVLRFGHDYDPTCMQMDEVLAGIAE
DVKNFAAIYMVDISEV
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mRNA from alignment at P-wetherbeei_contig18407:935..1135+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18407.1.1 ID=mRNA_P-wetherbeei_contig18407.1.1|Name=mRNA_P-wetherbeei_contig18407.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig18407:935..1135+ (Phaeothamnion wetherbeei SAG_119_79)
AGCATGTCCTACTTGCTGCCGCACTTGAGAAGCGGATGGGCAGTCGATCA
GGCGATTCTCAATGAAGAGGACCGCGTTGTTGTGCTGCGCTTCGGCCATG
ACTACGACCCCACATGCATGCAGATGGACGAAGTCTTGGCAGGAATCGCC
GAGGATGTGAAGAACTTTGCGGCCATCTACATGGTGGACATTAGCGAGGT
G
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18407:935..1135+

>mRNA_P-wetherbeei_contig18407.1.1 ID=mRNA_P-wetherbeei_contig18407.1.1|Name=mRNA_P-wetherbeei_contig18407.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig18407:935..1135+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCTACTTGCTGCCGCACTTGAGAAGCGGATGGGCAGTCGATCAGGC
GATTCTCAATGAAGAGGACCGCGTTGTTGTGCTGCGCTTCGGCCATGACT
ACGACCCCACATGCATGCAGATGGACGAAGTCTTGGCAGGAATCGCCGAG
GATGTGAAGAACTTTGCGGCCATCTACATGGTGGACATTAGCGAGGTG
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