mRNA_P-wetherbeei_contig1840.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1840.2.1
Unique NamemRNA_P-wetherbeei_contig1840.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig1840.2.1 vs. uniprot
Match: D7FQC9_ECTSI (SMC_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQC9_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 8.380e-19
Identity = 99/296 (33.45%), Postives = 130/296 (43.92%), Query Frame = 1 
Query:  409 DPAALLRQLEEAGSANRAAHAALSRAAEGRRRKLAALRSRLGDAPWHAALRRGGSGSSSGNXXXXXXXXXXXXXXXXXXXXXXAKASGHRGPLFDLVHVAKGNPAAAAEAARCRDALAAILGGHLVVWICETAAEAGAALDAARAAGAAIRVWPREHLAAAASSESGATGQWAAVRRQRLAEARHVAGNTDAAVMAASFLAPSVLPSAAAVAPGSDSVMDPASLLEWDEADPAVDAAARRVLGDVFITADDATSAALLSCSGVRSVTRTGRRHSPGELVSSASAAAGRAAAAWLEY 1296
            D    LR +++  S  R     LSRA E  R+ LAA R R+G   W + L   G G                               GHRG LF++  + +G      +    + ALA++L G L VW+CE+   A  ALD A++  A +RVWP   L AA  +  G  G+   VR+                           L  A    PG   V DPASLL WDE D  V AA  + LG   ITADD TSA +L   G+ SVT +G RH+PGE+V  A+   G    A L++
Sbjct:  258 DAEMYLRGVKDQRSIQRERQLDLSRALESSRQSLAAARRRVGAPQWCSQLVYSGGGGG-----------------------------GHRGFLFEVFEIRRG----LGDEGHLQ-ALASLLAGSLSVWVCESPQHADQALDLAKSNAAGLRVWPIARLKAATRASRG-QGRSGRVRQ--------------------------ALEWAERKWPGQGKVTDPASLLAWDEEDEGVTAAVDKALGTWVITADDDTSALVLDELGMSSVTLSGVRHAPGEVVGGAAQGEGARLRAKLDW 492
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1840.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQC9_ECTSI8.380e-1933.45SMC_N domain-containing protein n=1 Tax=Ectocarpus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1840contigP-wetherbeei_contig1840:3599..4949 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FQC9
PFAMsSMC_N,SMC_hinge
Model size1351
Max annot lvl2759|Eukaryota
KEGG koko:K06674
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000793,GO:0000794,GO:0000798,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003680,GO:0003690,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0008150,GO:0008152,GO:0008278,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0030892,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034641,GO:0034990,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048285,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0140014,GO:1901360,GO:1901363,GO:1903047,GO:1990837
Exons1
Evalue1.37e-19
EggNOG OGsCOG1196@1|root,KOG0933@2759|Eukaryota
Descriptionchromosome condensation
Cds size1350
COG categoryD
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186144.978155-CDS-P-wetherbeei_contig1840:3598..49481683186144.978155-CDS-P-wetherbeei_contig1840:3598..4948Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1840 3599..4948 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1840.2.1prot_P-wetherbeei_contig1840.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1840 3599..4948 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1840.2.1

>prot_P-wetherbeei_contig1840.2.1 ID=prot_P-wetherbeei_contig1840.2.1|Name=mRNA_P-wetherbeei_contig1840.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=450bp
GSGGAAGGSNAAAAAAVLRERRQAAAALCGAAGRLKATAATMAADAAGLV
AEAGAARDTLLRVESQADSVEQEAAAAEALVAAALAGCQGNGDSVGCGGG
GGGGSGGSGCWGGVIHGCRSDTPNADSAGSAGGGGGDPAALLRQLEEAGS
ANRAAHAALSRAAEGRRRKLAALRSRLGDAPWHAALRRGGSGSSSGNRGS
GSGNSGCGISGSGDGSSGTAKASGHRGPLFDLVHVAKGNPAAAAEAARCR
DALAAILGGHLVVWICETAAEAGAALDAARAAGAAIRVWPREHLAAAASS
ESGATGQWAAVRRQRLAEARHVAGNTDAAVMAASFLAPSVLPSAAAVAPG
SDSVMDPASLLEWDEADPAVDAAARRVLGDVFITADDATSAALLSCSGVR
SVTRTGRRHSPGELVSSASAAAGRAAAAWLEYGALVAAAEHDCGHSEALV
back to top

mRNA from alignment at P-wetherbeei_contig1840:3599..4949+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1840.2.1 ID=mRNA_P-wetherbeei_contig1840.2.1|Name=mRNA_P-wetherbeei_contig1840.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1351bp|location=Sequence derived from alignment at P-wetherbeei_contig1840:3599..4949+ (Phaeothamnion wetherbeei SAG_119_79)
GGCAGCGGCGGCGCCGCTGGCGGGTCCAACGCTGCTGCCGCAGCCGCCGT
GCTACGCGAGCGGCGCCAGGCGGCGGCCGCCCTATGCGGCGCCGCCGGAC
GGCTGAAGGCGACGGCTGCGACGATGGCCGCCGACGCTGCGGGGCTGGTC
GCAGAGGCGGGCGCCGCCCGGGATACACTTCTGCGGGTGGAATCACAGGC
GGACTCGGTGGAGCAGGAGGCAGCGGCGGCGGAGGCCCTCGTCGCCGCCG
CCCTCGCTGGCTGTCAGGGTAATGGCGATAGTGTCGGCTGCGGCGGCGGC
GGCGGCGGCGGCAGCGGAGGCAGCGGCTGCTGGGGTGGTGTCATTCATGG
TTGCAGGAGCGACACCCCGAACGCAGATTCAGCAGGTTCGGCGGGTGGCG
GAGGTGGTGATCCCGCCGCCTTGCTGCGTCAGCTGGAGGAGGCTGGAAGC
GCCAACCGAGCGGCGCACGCGGCGCTCTCGCGTGCCGCGGAAGGCCGCCG
CCGCAAATTGGCTGCCTTGCGGTCCCGCCTCGGCGACGCACCATGGCATG
CCGCTCTCCGCCGCGGTGGCAGCGGCAGCAGCAGCGGCAACCGCGGCAGC
GGCAGTGGCAACAGCGGCTGCGGCATCAGCGGCAGTGGCGATGGGAGCAG
CGGGACGGCGAAGGCGAGTGGCCACCGTGGCCCACTCTTCGACCTGGTGC
ACGTCGCGAAAGGAAACCCGGCGGCGGCGGCAGAGGCAGCCCGCTGCCGT
GACGCGCTGGCCGCCATCCTCGGCGGCCACCTCGTCGTCTGGATCTGTGA
GACGGCAGCGGAAGCCGGTGCGGCCCTCGATGCCGCACGGGCCGCTGGCG
CCGCAATCCGGGTCTGGCCGCGGGAGCACCTTGCGGCAGCGGCGTCCTCT
GAGTCTGGTGCCACTGGACAATGGGCCGCGGTGCGGCGGCAGCGTCTAGC
TGAGGCGCGGCACGTCGCCGGCAACACTGACGCTGCAGTTATGGCGGCGT
CTTTTTTGGCGCCGAGTGTCTTGCCATCGGCGGCGGCGGTTGCGCCGGGA
TCGGATTCAGTTATGGACCCGGCATCTTTGCTGGAATGGGACGAGGCGGA
CCCGGCTGTGGACGCCGCGGCGCGCAGGGTACTGGGTGACGTTTTCATCA
CCGCCGATGACGCCACGAGTGCTGCACTTTTGTCGTGCTCTGGAGTGCGC
AGCGTGACCCGCACCGGGCGCCGCCACAGCCCTGGTGAGCTCGTTTCGAG
CGCATCCGCCGCCGCCGGCCGTGCTGCCGCCGCCTGGCTGGAGTACGGCG
CGCTTGTAGCGGCTGCGGAGCACGACTGCGGCCACAGCGAGGCGCTAGTG
A
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1840:3599..4949+

>mRNA_P-wetherbeei_contig1840.2.1 ID=mRNA_P-wetherbeei_contig1840.2.1|Name=mRNA_P-wetherbeei_contig1840.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1350bp|location=Sequence derived from alignment at P-wetherbeei_contig1840:3599..4949+ (Phaeothamnion wetherbeei SAG_119_79)
GGCAGCGGCGGCGCCGCTGGCGGGTCCAACGCTGCTGCCGCAGCCGCCGT
GCTACGCGAGCGGCGCCAGGCGGCGGCCGCCCTATGCGGCGCCGCCGGAC
GGCTGAAGGCGACGGCTGCGACGATGGCCGCCGACGCTGCGGGGCTGGTC
GCAGAGGCGGGCGCCGCCCGGGATACACTTCTGCGGGTGGAATCACAGGC
GGACTCGGTGGAGCAGGAGGCAGCGGCGGCGGAGGCCCTCGTCGCCGCCG
CCCTCGCTGGCTGTCAGGGTAATGGCGATAGTGTCGGCTGCGGCGGCGGC
GGCGGCGGCGGCAGCGGAGGCAGCGGCTGCTGGGGTGGTGTCATTCATGG
TTGCAGGAGCGACACCCCGAACGCAGATTCAGCAGGTTCGGCGGGTGGCG
GAGGTGGTGATCCCGCCGCCTTGCTGCGTCAGCTGGAGGAGGCTGGAAGC
GCCAACCGAGCGGCGCACGCGGCGCTCTCGCGTGCCGCGGAAGGCCGCCG
CCGCAAATTGGCTGCCTTGCGGTCCCGCCTCGGCGACGCACCATGGCATG
CCGCTCTCCGCCGCGGTGGCAGCGGCAGCAGCAGCGGCAACCGCGGCAGC
GGCAGTGGCAACAGCGGCTGCGGCATCAGCGGCAGTGGCGATGGGAGCAG
CGGGACGGCGAAGGCGAGTGGCCACCGTGGCCCACTCTTCGACCTGGTGC
ACGTCGCGAAAGGAAACCCGGCGGCGGCGGCAGAGGCAGCCCGCTGCCGT
GACGCGCTGGCCGCCATCCTCGGCGGCCACCTCGTCGTCTGGATCTGTGA
GACGGCAGCGGAAGCCGGTGCGGCCCTCGATGCCGCACGGGCCGCTGGCG
CCGCAATCCGGGTCTGGCCGCGGGAGCACCTTGCGGCAGCGGCGTCCTCT
GAGTCTGGTGCCACTGGACAATGGGCCGCGGTGCGGCGGCAGCGTCTAGC
TGAGGCGCGGCACGTCGCCGGCAACACTGACGCTGCAGTTATGGCGGCGT
CTTTTTTGGCGCCGAGTGTCTTGCCATCGGCGGCGGCGGTTGCGCCGGGA
TCGGATTCAGTTATGGACCCGGCATCTTTGCTGGAATGGGACGAGGCGGA
CCCGGCTGTGGACGCCGCGGCGCGCAGGGTACTGGGTGACGTTTTCATCA
CCGCCGATGACGCCACGAGTGCTGCACTTTTGTCGTGCTCTGGAGTGCGC
AGCGTGACCCGCACCGGGCGCCGCCACAGCCCTGGTGAGCTCGTTTCGAG
CGCATCCGCCGCCGCCGGCCGTGCTGCCGCCGCCTGGCTGGAGTACGGCG
CGCTTGTAGCGGCTGCGGAGCACGACTGCGGCCACAGCGAGGCGCTAGTG
back to top