mRNA_P-wetherbeei_contig18385.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18385.1.1
Unique NamemRNA_P-wetherbeei_contig18385.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18385.1.1 vs. uniprot
Match: A0A3C2B1E2_9ACTN (NERD domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B1E2_9ACTN)

HSP 1 Score: 186 bits (472), Expect = 7.870e-54
Identity = 114/287 (39.72%), Postives = 158/287 (55.05%), Query Frame = 1 
Query:   16 VLPDASTPYVVGALLASVGWWFYVTMLEVGGMSSRRTGVIGEEWTTTELRKLR--RAGWLHANHVMLEGKDVDHVLFGPGGFFAIETKFRSDWTYAEKDLSAIAQQAFLAARDVRTK--PGRLTRRFEPIVVTWGPNVRDVFPEVFERHGVTFCPGPQLILHLRSLPNVIDGEEVRASFNGLAEYVAKRDGGELRDDGPNPRSINQGLCDAFVVLGVALASLLLATSLSSTRPQGLWSVLATLALATGGLVLRRRHPKVALVRYAGLAMALMNLGLAALTVAALVYD 864
            +LP    PY++GA +AS GW  Y+ M+  GG+S  +TG+  EEWT  ELR LR  R GW  ANH++LE  DVDHV  GPGGFFAIETK+RS+W  A  D+ +IA QA   A+ +R +  P  + R    +VV WG   R+  P+  E   V FC GP L+  L     VID E V++++  L +   +RD  EL +DGP  R    G+ D   V    + +     +  S +P G WSV A     +    LR+R   +  VRY  LA+A    GL  + +AA +++
Sbjct:   16 LLPAELGPYLIGAAVASCGWGLYLLMVRFGGISGHQTGIAAEEWTAGELRVLRWKRLGWKTANHILLERSDVDHVALGPGGFFAIETKYRSNWRDA--DIESIAAQARHGAQRLRPRLGPKAVVRA---VVVIWGQGARERCPQPSEEADVVFCCGPDLVPFLLDQSTVIDPEAVQSAYQQLLDNSRRRDIAELAEDGPFARPAIYGVVDTAAVALAVMCTTSATLAPVSLQPAGWWSVAAATVTTSICAALRQRVANLT-VRYFLLAVATTAAGLGVIVLAATLFN 296
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BLAST of mRNA_P-wetherbeei_contig18385.1.1 vs. uniprot
Match: W9GP22_9MICO (NERD domain-containing protein n=2 Tax=Intrasporangium TaxID=53357 RepID=W9GP22_9MICO)

HSP 1 Score: 94.0 bits (232), Expect = 8.810e-19
Identity = 62/184 (33.70%), Postives = 96/184 (52.17%), Query Frame = 1 
Query:   43 VVGALLASVGWWFYVTMLEVGGMSSRRTGVIGEEWTTTELRKLRRAGWLHANHVMLEGKDVDHVLFGPGGFFAIETKFRSDWTYA---EKDLSAIAQQAFLAARDVRTKP-GRLTRRFEPIVVTWGPNVRDVFPEVFER--HGVTFCPGPQLILHLRSLPN-VIDGEEVRASFNGLAEYVAKRD 573
            V+GA L ++    +V  ++  G +    G   E+WT TELR+L R GW   NHV L   D+DHVL GPGG +A+ETK+ S W+ +   ++ L  I Q    A       P  +L    +P++V WGP +  +  +   R  + VT   G  L   LRSL N V+  +++  +++ L  ++  RD
Sbjct:    2 VIGAFLVALPSAVWVLTMQFTGTAPVMMGDEAEQWTATELRRLSRRGWRVINHVALREDDIDHVLVGPGGAYAVETKWSSSWSTSYGRDRVLEGIEQVRANARLLKLWHPLKQLAITPQPVLVMWGPGLSKLNSQDRVRVVNEVTVVVGSALRPWLRSLDNGVLSEQQISGAWSALEAHLEGRD 185
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BLAST of mRNA_P-wetherbeei_contig18385.1.1 vs. uniprot
Match: A0A7J9WRW1_9ACTN (NERD domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7J9WRW1_9ACTN)

HSP 1 Score: 58.9 bits (141), Expect = 3.640e-6
Identity = 37/107 (34.58%), Postives = 51/107 (47.66%), Query Frame = 1 
Query:  139 EEWTTTELRKLRRAGWLHANHVMLEGKDVDHVLFGPGGFFAIETKFRSDWTYAEKDLSAIA---------QQAFLAARDVRTKPGRLTRRFE--PIVVTWGPNVRDV 426
            E WT+ +LR+     W   + +  E  DVDHV+ GPGG  A+ETK    WT ++ DL +           QQA   +R V+        R    P+VV WGP +  V
Sbjct:  318 EGWTSKDLRRWLGRDWHVVDWISFEFHDVDHVVVGPGGVLAVETK----WTDSKLDLRSSRGKTRAHEWIQQATNGSRSVQYLLSSFGYRLRVSPVVVVWGPEISGV 420
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BLAST of mRNA_P-wetherbeei_contig18385.1.1 vs. uniprot
Match: F8EUY6_ZYMMT (NERD domain protein n=1 Tax=Zymomonas mobilis subsp. pomaceae (strain ATCC 29192 / DSM 22645 / JCM 10191 / CCUG 17912 / NBRC 13757 / NCIMB 11200 / NRRL B-4491 / Barker I) TaxID=579138 RepID=F8EUY6_ZYMMT)

HSP 1 Score: 55.1 bits (131), Expect = 4.300e-5
Identity = 29/89 (32.58%), Postives = 47/89 (52.81%), Query Frame = 1 
Query:   58 LASVGWWFYVTMLEVGGMSSRRTGVIGEEWTTTELRKLRRAGWLHANHVMLEGKDVDHVLFGPGGFFAIETKFRSDWTYAEKDLSAIAQ 324
            ++S+ W  Y T   +    +   G+ GE  T    + L + GW   + +     ++DHVL GP G FAIETK+RS + + +   +A+AQ
Sbjct:  103 ISSIAWSVYATKSIMEKRRAIIAGLQGERATAQCFQPLLQEGWQIFHDLQCPRGNIDHVLVGPTGVFAIETKYRSKYAHIKGRQNALAQ 191
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18385.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A3C2B1E2_9ACTN7.870e-5439.72NERD domain-containing protein n=1 Tax=Acidimicrob... [more]
W9GP22_9MICO8.810e-1933.70NERD domain-containing protein n=2 Tax=Intrasporan... [more]
A0A7J9WRW1_9ACTN3.640e-634.58NERD domain-containing protein n=1 Tax=Actinomycet... [more]
F8EUY6_ZYMMT4.300e-532.58NERD domain protein n=1 Tax=Zymomonas mobilis subs... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18385contigP-wetherbeei_contig18385:474..1352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog579138.Zymop_0371
PFAMsNERD
Model size879
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.05e-06
EggNOG OGs2BH5I@1|root,32B6M@2|Bacteria,1RKHK@1224|Proteobacteria,2UVCV@28211|Alphaproteobacteria
DescriptionPFAM NERD domain protein
Cds size879
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186144.2961473-CDS-P-wetherbeei_contig18385:473..13521683186144.2961473-CDS-P-wetherbeei_contig18385:473..1352Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18385 474..1352 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18385.1.1prot_P-wetherbeei_contig18385.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18385 474..1352 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18385.1.1

>prot_P-wetherbeei_contig18385.1.1 ID=prot_P-wetherbeei_contig18385.1.1|Name=mRNA_P-wetherbeei_contig18385.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=293bp
ALSFVVLPDASTPYVVGALLASVGWWFYVTMLEVGGMSSRRTGVIGEEWT
TTELRKLRRAGWLHANHVMLEGKDVDHVLFGPGGFFAIETKFRSDWTYAE
KDLSAIAQQAFLAARDVRTKPGRLTRRFEPIVVTWGPNVRDVFPEVFERH
GVTFCPGPQLILHLRSLPNVIDGEEVRASFNGLAEYVAKRDGGELRDDGP
NPRSINQGLCDAFVVLGVALASLLLATSLSSTRPQGLWSVLATLALATGG
LVLRRRHPKVALVRYAGLAMALMNLGLAALTVAALVYDRATG*
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mRNA from alignment at P-wetherbeei_contig18385:474..1352-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18385.1.1 ID=mRNA_P-wetherbeei_contig18385.1.1|Name=mRNA_P-wetherbeei_contig18385.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=879bp|location=Sequence derived from alignment at P-wetherbeei_contig18385:474..1352- (Phaeothamnion wetherbeei SAG_119_79)
GCGCTGAGCTTCGTTGTCCTGCCTGATGCAAGCACGCCCTACGTCGTGGG
TGCCTTGCTTGCTTCGGTCGGCTGGTGGTTCTACGTGACGATGCTCGAGG
TCGGCGGCATGTCATCAAGGCGCACAGGTGTGATTGGCGAGGAGTGGACG
ACGACCGAACTTCGCAAGCTACGACGAGCGGGGTGGCTGCACGCAAACCA
CGTCATGCTCGAAGGCAAAGATGTCGACCACGTGCTGTTCGGACCTGGAG
GTTTCTTCGCCATCGAGACGAAGTTCCGATCGGACTGGACGTACGCCGAG
AAGGACCTGAGCGCGATCGCGCAGCAGGCGTTCCTAGCGGCGCGGGACGT
CCGGACCAAGCCCGGCCGGTTGACGCGCCGATTCGAGCCGATCGTGGTGA
CGTGGGGCCCGAACGTGCGAGATGTCTTTCCGGAGGTGTTCGAGCGGCAT
GGCGTGACCTTCTGTCCCGGGCCGCAGCTGATTCTCCATCTCCGATCCCT
CCCCAACGTCATTGACGGAGAGGAGGTGCGAGCGTCGTTCAACGGTCTCG
CCGAATACGTCGCCAAGCGCGACGGAGGAGAGTTGCGAGACGACGGCCCC
AACCCGCGCAGCATCAATCAAGGGCTCTGCGACGCCTTCGTTGTCCTCGG
AGTCGCGCTGGCATCGTTGCTGTTGGCGACGTCGCTTTCATCGACCCGGC
CGCAAGGGCTGTGGTCGGTCCTGGCCACCCTCGCCTTAGCCACTGGTGGT
CTGGTGCTTCGGCGGCGCCATCCCAAGGTTGCGCTCGTTCGCTACGCGGG
GCTGGCAATGGCGCTGATGAATCTTGGCCTCGCAGCGCTCACCGTCGCTG
CTCTCGTATACGACCGAGCAACCGGATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18385:474..1352-

>mRNA_P-wetherbeei_contig18385.1.1 ID=mRNA_P-wetherbeei_contig18385.1.1|Name=mRNA_P-wetherbeei_contig18385.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=879bp|location=Sequence derived from alignment at P-wetherbeei_contig18385:474..1352- (Phaeothamnion wetherbeei SAG_119_79)
GCGCTGAGCTTCGTTGTCCTGCCTGATGCAAGCACGCCCTACGTCGTGGG
TGCCTTGCTTGCTTCGGTCGGCTGGTGGTTCTACGTGACGATGCTCGAGG
TCGGCGGCATGTCATCAAGGCGCACAGGTGTGATTGGCGAGGAGTGGACG
ACGACCGAACTTCGCAAGCTACGACGAGCGGGGTGGCTGCACGCAAACCA
CGTCATGCTCGAAGGCAAAGATGTCGACCACGTGCTGTTCGGACCTGGAG
GTTTCTTCGCCATCGAGACGAAGTTCCGATCGGACTGGACGTACGCCGAG
AAGGACCTGAGCGCGATCGCGCAGCAGGCGTTCCTAGCGGCGCGGGACGT
CCGGACCAAGCCCGGCCGGTTGACGCGCCGATTCGAGCCGATCGTGGTGA
CGTGGGGCCCGAACGTGCGAGATGTCTTTCCGGAGGTGTTCGAGCGGCAT
GGCGTGACCTTCTGTCCCGGGCCGCAGCTGATTCTCCATCTCCGATCCCT
CCCCAACGTCATTGACGGAGAGGAGGTGCGAGCGTCGTTCAACGGTCTCG
CCGAATACGTCGCCAAGCGCGACGGAGGAGAGTTGCGAGACGACGGCCCC
AACCCGCGCAGCATCAATCAAGGGCTCTGCGACGCCTTCGTTGTCCTCGG
AGTCGCGCTGGCATCGTTGCTGTTGGCGACGTCGCTTTCATCGACCCGGC
CGCAAGGGCTGTGGTCGGTCCTGGCCACCCTCGCCTTAGCCACTGGTGGT
CTGGTGCTTCGGCGGCGCCATCCCAAGGTTGCGCTCGTTCGCTACGCGGG
GCTGGCAATGGCGCTGATGAATCTTGGCCTCGCAGCGCTCACCGTCGCTG
CTCTCGTATACGACCGAGCAACCGGATGA
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