mRNA_P-wetherbeei_contig18357.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18357.1.1
Unique NamemRNA_P-wetherbeei_contig18357.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18357.1.1 vs. uniprot
Match: A0A7S2UYJ2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYJ2_9STRA)

HSP 1 Score: 166 bits (419), Expect = 4.160e-51
Identity = 75/99 (75.76%), Postives = 87/99 (87.88%), Query Frame = 1 
Query:    1 PLDAGCYVSGLYLEGAGWDVDRQCLRRQDPKALVTELPLLQVVPVEAAKLKLQGTFRTPVYVTQERRNAMGVGLVFEADLKTVEHPSHWVLQGVALTLN 297
            PL++GCYV GLYLEGA W++++ CL RQ PK LV ELP+LQV+P+EA+KLKLQ TFRTPVYVTQ RRNAMGVGLVFEADL T EH SHW+LQGVAL+LN
Sbjct:   22 PLESGCYVDGLYLEGANWNLEKSCLERQKPKVLVVELPILQVIPIEASKLKLQNTFRTPVYVTQARRNAMGVGLVFEADLATKEHSSHWILQGVALSLN 120
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BLAST of mRNA_P-wetherbeei_contig18357.1.1 vs. uniprot
Match: A0A482RFX4_9ARCH (Dynein_C domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RFX4_9ARCH)

HSP 1 Score: 164 bits (416), Expect = 3.810e-50
Identity = 74/99 (74.75%), Postives = 86/99 (86.87%), Query Frame = 1 
Query:    1 PLDAGCYVSGLYLEGAGWDVDRQCLRRQDPKALVTELPLLQVVPVEAAKLKLQGTFRTPVYVTQERRNAMGVGLVFEADLKTVEHPSHWVLQGVALTLN 297
            PL+ GCYV GL+LEGAGWD++R CL RQ+PK LV ELP++QV+P+E+++LKL  TFRTPVYVT  RRNAMGVGLVFEADL T EHPSHWVLQGVAL LN
Sbjct:   59 PLEDGCYVRGLFLEGAGWDLERSCLCRQEPKVLVVELPIMQVIPIESSRLKLHNTFRTPVYVTSARRNAMGVGLVFEADLATTEHPSHWVLQGVALCLN 157
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BLAST of mRNA_P-wetherbeei_contig18357.1.1 vs. uniprot
Match: A0A6U4G881_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4G881_9STRA)

HSP 1 Score: 166 bits (420), Expect = 5.390e-49
Identity = 76/99 (76.77%), Postives = 88/99 (88.89%), Query Frame = 1 
Query:    1 PLDAGCYVSGLYLEGAGWDVDRQCLRRQDPKALVTELPLLQVVPVEAAKLKLQGTFRTPVYVTQERRNAMGVGLVFEADLKTVEHPSHWVLQGVALTLN 297
            PL++GCYVSGLYLEGA WD +  CLRRQDPK LV +LP+LQV+P+EAA+LKL  TFRTPVYVTQ+RRNAMGVGLVFEADL + EH SHWVLQGV+L+LN
Sbjct:  198 PLESGCYVSGLYLEGAAWDTEAMCLRRQDPKVLVQDLPVLQVIPIEAARLKLINTFRTPVYVTQKRRNAMGVGLVFEADLSSSEHQSHWVLQGVSLSLN 296
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BLAST of mRNA_P-wetherbeei_contig18357.1.1 vs. uniprot
Match: A0A7S0RBZ1_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RBZ1_9CHLO)

HSP 1 Score: 166 bits (421), Expect = 1.020e-47
Identity = 77/96 (80.21%), Postives = 85/96 (88.54%), Query Frame = 1 
Query:   13 GCYVSGLYLEGAGWDVDRQCLRRQDPKALVTELPLLQVVPVEAAKLKLQGTFRTPVYVTQERRNAMGVGLVFEADLKTVEHPSHWVLQGVALTLNV 300
            GCYVSGLYLEGAGWD +R  LR+QDPK LVTELP++Q++P+EA KLKL  TFR PVYVTQ RRNAMGVGLVFEADL T EHPSHWVLQGVALTLN+
Sbjct:  345 GCYVSGLYLEGAGWDYERSQLRKQDPKVLVTELPIMQIIPIEANKLKLANTFRAPVYVTQARRNAMGVGLVFEADLATSEHPSHWVLQGVALTLNI 440
[Close]
BLAST of mRNA_P-wetherbeei_contig18357.1.1 vs. uniprot
Match: A0A482SI56_9ARCH (Dynein_C domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SI56_9ARCH)

HSP 1 Score: 157 bits (398), Expect = 1.160e-47
Identity = 71/99 (71.72%), Postives = 85/99 (85.86%), Query Frame = 1 
Query:    4 LDAGCYVSGLYLEGAGWDVDRQCLRRQDPKALVTELPLLQVVPVEAAKLKLQGTFRTPVYVTQERRNAMGVGLVFEADLKTVEHPSHWVLQGVALTLNV 300
            L++GCYVSGLYLEGA WD +   LR QDPK LV ELP++Q++P+EA+KLKL  TFRTPVYVTQ RRNAMGVG+VFEADL T +H SHWVLQGV+L+LN+
Sbjct:   41 LESGCYVSGLYLEGAAWDHEHSILRAQDPKVLVAELPIMQIIPIEASKLKLHNTFRTPVYVTQARRNAMGVGMVFEADLATHDHSSHWVLQGVSLSLNI 139
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BLAST of mRNA_P-wetherbeei_contig18357.1.1 vs. uniprot
Match: A0A5A8CNV6_CAFRO (Uncharacterized protein n=7 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CNV6_CAFRO)

HSP 1 Score: 167 bits (422), Expect = 7.760e-46
Identity = 79/98 (80.61%), Postives = 86/98 (87.76%), Query Frame = 1 
Query:    4 LDAGCYVSGLYLEGAGWDVDRQCLRRQDPKALVTELPLLQVVPVEAAKLKLQGTFRTPVYVTQERRNAMGVGLVFEADLKTVEHPSHWVLQGVALTLN 297
            L+ GCYV GLYLEGAGWD++R  L+RQDPK LVTELP+LQV+P+EAAKLKL GTFR PVYVTQ RRNAMGVGLVFEADL T EHPS WVLQGVAL LN
Sbjct: 4750 LEDGCYVRGLYLEGAGWDLERSVLKRQDPKVLVTELPILQVIPIEAAKLKLHGTFRAPVYVTQSRRNAMGVGLVFEADLATDEHPSLWVLQGVALALN 4847
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BLAST of mRNA_P-wetherbeei_contig18357.1.1 vs. uniprot
Match: D7FMK5_ECTSI (Dynein-1-alpha heavy chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMK5_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 1.440e-45
Identity = 76/99 (76.77%), Postives = 89/99 (89.90%), Query Frame = 1 
Query:    1 PLDAGCYVSGLYLEGAGWDVDRQCLRRQDPKALVTELPLLQVVPVEAAKLKLQGTFRTPVYVTQERRNAMGVGLVFEADLKTVEHPSHWVLQGVALTLN 297
            P+++GCY+SGLYLEGA WD++  CL RQ+PK LVTELP+LQV+P+EA+KLK+Q TFRTPVYVTQERRNAMGVGLVFEADL+  EHPSH VLQGVAL LN
Sbjct: 4512 PVESGCYLSGLYLEGAAWDMEESCLVRQEPKVLVTELPILQVIPIEASKLKIQNTFRTPVYVTQERRNAMGVGLVFEADLQMFEHPSHCVLQGVALCLN 4610
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BLAST of mRNA_P-wetherbeei_contig18357.1.1 vs. uniprot
Match: A0A7S0YCE7_9CHLO (Hypothetical protein n=2 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0YCE7_9CHLO)

HSP 1 Score: 165 bits (418), Expect = 2.670e-45
Identity = 79/96 (82.29%), Postives = 84/96 (87.50%), Query Frame = 1 
Query:   13 GCYVSGLYLEGAGWDVDRQCLRRQDPKALVTELPLLQVVPVEAAKLKLQGTFRTPVYVTQERRNAMGVGLVFEADLKTVEHPSHWVLQGVALTLNV 300
            GCY+SGLYLEGA WDVDR  L+RQ PK LVTELP+LQVVPVEA+KLKL  TFR PVYVTQ RRNAMGVGLVFEADL T EHPSHWVLQGVAL LN+
Sbjct: 2475 GCYISGLYLEGASWDVDRSHLKRQAPKVLVTELPVLQVVPVEASKLKLANTFRAPVYVTQARRNAMGVGLVFEADLATTEHPSHWVLQGVALCLNI 2570
[Close]
BLAST of mRNA_P-wetherbeei_contig18357.1.1 vs. uniprot
Match: A0A1V9Y892_9STRA (Dynein heavy chain (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y892_9STRA)

HSP 1 Score: 165 bits (418), Expect = 2.670e-45
Identity = 75/99 (75.76%), Postives = 88/99 (88.89%), Query Frame = 1 
Query:    4 LDAGCYVSGLYLEGAGWDVDRQCLRRQDPKALVTELPLLQVVPVEAAKLKLQGTFRTPVYVTQERRNAMGVGLVFEADLKTVEHPSHWVLQGVALTLNV 300
            +D+GCYV+GLYLEGA WD+ R CL +Q PK LV ELP+LQV+P+EA++LKLQ TFRTPVYVTQ RRNAMGVGLVFEADL T +HPSHWVLQGVAL+LN+
Sbjct: 2817 VDSGCYVNGLYLEGASWDLSRSCLCQQQPKKLVEELPILQVIPIEASRLKLQNTFRTPVYVTQSRRNAMGVGLVFEADLFTFDHPSHWVLQGVALSLNI 2915
[Close]
BLAST of mRNA_P-wetherbeei_contig18357.1.1 vs. uniprot
Match: A0A0W8D0S6_PHYNI (Dynein heavy chain n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D0S6_PHYNI)

HSP 1 Score: 159 bits (401), Expect = 3.840e-45
Identity = 74/97 (76.29%), Postives = 83/97 (85.57%), Query Frame = 1 
Query:    7 DAGCYVSGLYLEGAGWDVDRQCLRRQDPKALVTELPLLQVVPVEAAKLKLQGTFRTPVYVTQERRNAMGVGLVFEADLKTVEHPSHWVLQGVALTLN 297
            DAGCYV GL+LEGA WD++R CL  Q PK LV ELP+LQV+P+EA++LKLQ TFRTPVYVTQ RRNAMGVGLVFEADL + EH SHWVLQGVAL LN
Sbjct:  298 DAGCYVKGLFLEGASWDLERGCLAPQKPKQLVEELPILQVIPIEASRLKLQNTFRTPVYVTQSRRNAMGVGLVFEADLYSTEHASHWVLQGVALALN 394
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18357.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2UYJ2_9STRA4.160e-5175.76Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A482RFX4_9ARCH3.810e-5074.75Dynein_C domain-containing protein n=1 Tax=archaeo... [more]
A0A6U4G881_9STRA5.390e-4976.77Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S0RBZ1_9CHLO1.020e-4780.21Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A482SI56_9ARCH1.160e-4771.72Dynein_C domain-containing protein (Fragment) n=1 ... [more]
A0A5A8CNV6_CAFRO7.760e-4680.61Uncharacterized protein n=7 Tax=Cafeteria roenberg... [more]
D7FMK5_ECTSI1.440e-4576.77Dynein-1-alpha heavy chain n=2 Tax=Ectocarpus TaxI... [more]
A0A7S0YCE7_9CHLO2.670e-4582.29Hypothetical protein n=2 Tax=Polytomella parva Tax... [more]
A0A1V9Y892_9STRA2.670e-4575.76Dynein heavy chain (Fragment) n=1 Tax=Thraustothec... [more]
A0A0W8D0S6_PHYNI3.840e-4576.29Dynein heavy chain n=1 Tax=Phytophthora nicotianae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18357contigP-wetherbeei_contig18357:980..1288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FMK5
Preferred nameDNAH10
PFAMsAAA_5,AAA_6,AAA_7,AAA_8,AAA_9,DHC_N1,DHC_N2,Dynein_heavy,MT
Model size309
Max annot lvl2759|Eukaryota
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005875,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008017,GO:0008092,GO:0008150,GO:0008569,GO:0009987,GO:0015630,GO:0015631,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0031514,GO:0032838,GO:0032991,GO:0034622,GO:0035082,GO:0036156,GO:0036159,GO:0040011,GO:0042623,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0045503,GO:0045505,GO:0048870,GO:0051179,GO:0051674,GO:0051959,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902494,GO:1990939
Exons1
Evalue2.37e-46
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota
Descriptiondynein light chain binding
Cds size309
COG categoryZ
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186143.8069146-CDS-P-wetherbeei_contig18357:979..12881683186143.8069146-CDS-P-wetherbeei_contig18357:979..1288Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18357 980..1288 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18357.1.1prot_P-wetherbeei_contig18357.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18357 980..1288 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18357.1.1

>prot_P-wetherbeei_contig18357.1.1 ID=prot_P-wetherbeei_contig18357.1.1|Name=mRNA_P-wetherbeei_contig18357.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=103bp
PLDAGCYVSGLYLEGAGWDVDRQCLRRQDPKALVTELPLLQVVPVEAAKL
KLQGTFRTPVYVTQERRNAMGVGLVFEADLKTVEHPSHWVLQGVALTLNV
SD*
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mRNA from alignment at P-wetherbeei_contig18357:980..1288-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18357.1.1 ID=mRNA_P-wetherbeei_contig18357.1.1|Name=mRNA_P-wetherbeei_contig18357.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig18357:980..1288- (Phaeothamnion wetherbeei SAG_119_79)
CCGCTGGACGCTGGCTGCTACGTTTCCGGGCTCTACCTGGAAGGAGCCGG
CTGGGACGTCGACCGGCAGTGCCTCCGGCGACAGGACCCGAAAGCGCTTG
TCACAGAGCTGCCACTGCTGCAGGTCGTACCCGTCGAGGCGGCCAAGCTC
AAGCTGCAGGGCACGTTCCGGACACCCGTGTATGTGACGCAGGAGCGGCG
GAATGCCATGGGGGTAGGGCTTGTGTTTGAGGCAGACCTGAAGACGGTGG
AGCACCCGAGCCATTGGGTGCTTCAGGGCGTCGCGCTGACGCTCAACGTC
TCCGACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18357:980..1288-

>mRNA_P-wetherbeei_contig18357.1.1 ID=mRNA_P-wetherbeei_contig18357.1.1|Name=mRNA_P-wetherbeei_contig18357.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig18357:980..1288- (Phaeothamnion wetherbeei SAG_119_79)
CCGCTGGACGCTGGCTGCTACGTTTCCGGGCTCTACCTGGAAGGAGCCGG
CTGGGACGTCGACCGGCAGTGCCTCCGGCGACAGGACCCGAAAGCGCTTG
TCACAGAGCTGCCACTGCTGCAGGTCGTACCCGTCGAGGCGGCCAAGCTC
AAGCTGCAGGGCACGTTCCGGACACCCGTGTATGTGACGCAGGAGCGGCG
GAATGCCATGGGGGTAGGGCTTGTGTTTGAGGCAGACCTGAAGACGGTGG
AGCACCCGAGCCATTGGGTGCTTCAGGGCGTCGCGCTGACGCTCAACGTC
TCCGACTGA
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