mRNA_P-wetherbeei_contig18337.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18337.1.1
Unique NamemRNA_P-wetherbeei_contig18337.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18337.1.1 vs. uniprot
Match: D7FMH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH0_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 1.050e-31
Identity = 117/336 (34.82%), Postives = 152/336 (45.24%), Query Frame = 1 
Query:   19 NVDHARSAFAAGGLGMLRDPEADIIERHQIAARAYVRAAQRMQRIFRAAALPRAARRHLRRQRAALAVQRVIRGHFGRIYVGLWRQVSHAAATRIGATVRSWIHRRHFRAWRLRARAACVAIQRAFRGFLARSYVKWIATHAAAARXXXXXXXXXXXRRRCRRLRARLFAERVVFPAVVTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQRQVKAATDXXXXXXXXXXXXXXXRLELHRRRGILATRLQAVARGYIDRELLRARRELGWRDAVAAPAATLMQAQWRGFVKRRGLADHRRRWLAALRVQIWWRGAL 1026
            NV HA  AFAA G     D +A +++R+ +     V AA R+QR  R   LPRAARR  RRQRA LAVQRV RGH GR Y  +W+ V+  AATR+ A  R +  +R F A+R RARA  + +QR+ RGFL R   K                              R F E V    +V                                                  R+R   AA +               R+   R    +ATR+ AV RGYIDREL++ARR          PA  L+Q+QWRG+ +RR LA H++RWLAAL +Q+ +RGA+
Sbjct: 1136 NVRHAAGAFAASGPPP--DLDAGVLDRYGVLLGRLVEAATRIQRERRLGGLPRAARRLWRRQRAVLAVQRVFRGHLGRSYASMWKVVAVLAATRLSAGWRRFSTQRKFLAFRARARAGAIGLQRSIRGFLVRKAYK------------------------------RRFQEAVRVKVIVP-----------------------------SAGVLQKCWRGKKGREEGALRRRMWAAAIEIQRHVRGFSKRMWWARVLFCRLEHAMATRIAAVGRGYIDRELVKARRSQRHFLHTITPACVLIQSQWRGYTRRRDLAKHKQRWLAALFIQVAYRGAV 1410
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BLAST of mRNA_P-wetherbeei_contig18337.1.1 vs. uniprot
Match: A0A6H5KC52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC52_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.250e-13
Identity = 90/304 (29.61%), Postives = 122/304 (40.13%), Query Frame = 1 
Query:   73 DPEADIIERHQIAARAYVRAAQRMQRIFRAAALPRAARRHLRRQRAALAVQRVIRGHFGRIYVGLWRQVSHAAATRIGATVRSWIHRRHFRAWRLRARAACVAIQRAFRGFLARSYVKWIATHAAAARXXXXXXXXXXXRRRCRRLRARLFAERVVFPAVVTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQRQVKAATDXXXXXXXXXXXXXXXRLELHRRRGILATRLQAVA------RGYIDRELLRARRELGWRDAVAAPAATLMQAQWRGFVKRRGLA 966
            D +A +++R+ +     V AA R+QR+ R   LPRAARR  RRQRA LAVQRV RGH GR Y  +W+ V+  AATR+ A  R +  +R F A+R RARA  + +Q              + T  +                      AR F E    PA++ +                                                  R+ + A                 R +  R  G L  R+ A A      RGYIDREL++ARR          PA  L+Q+QWRG+ +RR LA
Sbjct: 1179 DLDAGVLDRYGVLLGRLVEAATRIQRVRRLGGLPRAARRLRRRQRAVLAVQRVFRGHLGRRYASMWKVVAVLAATRLSAGWRRFSAQRKFLAFRARARAGAIGLQ--------------VGTLVSCQARCAWSIGE-----------ARAF-ELCGLPAILLIQRSIRGFLVRKACT------------------------------------RRFQEAVRVKVIVPSAGVLQKCWRGKKGREEGALRRRMWAAAIEIQVGRGYIDRELVKARRAQRHFLHTITPACVLIQSQWRGYTRRRDLA 1420
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BLAST of mRNA_P-wetherbeei_contig18337.1.1 vs. uniprot
Match: A0A6U4LQX9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4LQX9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.800e-12
Identity = 58/161 (36.02%), Postives = 86/161 (53.42%), Query Frame = 1 
Query:   73 DPEADIIERHQIAARAYVRAAQRMQRIFRAAALPRAARRHLRRQRAALAVQRVIRGHFGRIYVGLWRQVSHAAATRIGATVRSWIHRRHFRAWRLRARAACVAIQRAFRGFLARSYVKWIATHAAAARXXXXXXXXXXXRRRCRRL-----RARLFAERVV 540
            D E  ++++  +  R +   AQR+QRI+R     +  RR+ R+ RAA+ +QRV+RGHF R Y  ++  V+  AA RI +  R ++ RR     R R   ACV +QR FRG   R Y+K+I  + + AR           R+R R +     RA L A+ VV
Sbjct:  588 DLEKQVLDKFAVYTRRWTLVAQRLQRIYRFHKFTKVIRRYNRKHRAAMDIQRVLRGHFSRNYASIYVTVAEVAAIRIESRWRGFVSRRATAELRRRKTGACVGMQRRFRGHYTRRYLKYIKLNFSCARDVQAVVRGFLARQRRRAMVRARGRAALAAKMVV 748
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BLAST of mRNA_P-wetherbeei_contig18337.1.1 vs. uniprot
Match: A0A2D4CEV1_PYTIN (Lactamase_B domain-containing protein n=4 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CEV1_PYTIN)

HSP 1 Score: 74.3 bits (181), Expect = 1.590e-10
Identity = 142/318 (44.65%), Postives = 182/318 (57.23%), Query Frame = 1 
Query:   64 MLRDPEADIIERHQIAARAYVRAAQRMQRIFRAAALPRAARRHLRRQRAALAVQRVIRGHFGRIYVGLWRQVSHAAATRIGATVRSWIHRRHFRAWRLRARAACVAIQRAFRGFLARSYVKWIATHAAAARXXXXXXXXXXXRRRCRRLRARLFAERVVFPAVVTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQRQVKAATDXXXXXXXXXXXXXXXRLELHRRRGILATRLQAVARGYIDRELLRARRELGWRDAVAAPAATLMQAQWRGFVKRRGLADHRRRWLAALRVQIWWR 1017
            +LR+ EA  + ++    RA   AA R+QR  R  +  RA    LRR RAA  +QR  RG   R +V  + +V   A+  + +  RS+  R+  +  R R   A   +QR +RGF+AR++V+WI        XXXXXXXXXXX  R  R+R   +  RV+ PA  + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +   ++A+                 L   RRR  +AT + AVARGYI R+ +R  R   +   V  PAA  +Q  +RG   RR L D R R  AA+ +Q  WR
Sbjct:  666 LLRNHEAQFLPKYLKRRRALTVAALRLQRTCRRRSQRRAIAGILRRHRAAGTIQRWFRGSQARAFVRAYHRVLTCASIVVQSVFRSYASRQRTKELRRRMENAARLLQRCYRGFVARAWVRWIRQXXXXXXXXXXXXXXXXXXCRVARMRLARYKRRVLQPAATSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQRFRHAWQSASVIQRHWRSHRYYRKWMELMEWRRRERMATSIGAVARGYIARKFVRRERRKRYLARVVRPAAITIQRVFRGHQVRRRLEDLRDRVEAAITLQQMWR 983
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18337.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FMH0_ECTSI1.050e-3134.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KC52_9PHAE1.250e-1329.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6U4LQX9_9STRA3.800e-1236.02Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2D4CEV1_PYTIN1.590e-1044.65Lactamase_B domain-containing protein n=4 Tax=Pyth... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18337contigP-wetherbeei_contig18337:8..1361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FMH0
PFAMsIQ
Model size1203
Max annot lvl2759|Eukaryota
KEGG koko:K16743
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.72e-32
EggNOG OGs29C0P@1|root,2RJ48@2759|Eukaryota
DescriptionShort calmodulin-binding motif containing conserved Ile and Gln residues.
Cds size1203
COG categoryS
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186143.2485604-CDS-P-wetherbeei_contig18337:7..2831683186143.2485604-CDS-P-wetherbeei_contig18337:7..283Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18337 8..283 +
1683186143.266175-CDS-P-wetherbeei_contig18337:434..13611683186143.266175-CDS-P-wetherbeei_contig18337:434..1361Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18337 435..1361 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18337.1.1prot_P-wetherbeei_contig18337.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18337 8..1361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18337.1.1

>prot_P-wetherbeei_contig18337.1.1 ID=prot_P-wetherbeei_contig18337.1.1|Name=mRNA_P-wetherbeei_contig18337.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=401bp
GGAAAANVDHARSAFAAGGLGMLRDPEADIIERHQIAARAYVRAAQRMQR
IFRAAALPRAARRHLRRQRAALAVQRVIRGHFGRIYVGLWRQVSHAAATR
IGATVRSWIHRRHFRAWRLRARAACVAIQRAFRGFLARSYVKWIATHAAA
ARQVQRAARGFVVRRRCRRLRARLFAERVVFPAVVTVQRVGRGYLGRRAA
RRRLAAEIWRLVVVPSAVTIQRMWRGHCGRRERRRRQRQVKAATDLQRCG
RGFLGRRRWRRLELHRRRGILATRLQAVARGYIDRELLRARRELGWRDAV
AAPAATLMQAQWRGFVKRRGLADHRRRWLAALRVQIWWRGALAAAAARAR
WRRAMRQIRDGAATRVQCCWRGFTARRERRRRHAEAVWRRTFAGRVIMRC
W
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mRNA from alignment at P-wetherbeei_contig18337:8..1361+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18337.1.1 ID=mRNA_P-wetherbeei_contig18337.1.1|Name=mRNA_P-wetherbeei_contig18337.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1354bp|location=Sequence derived from alignment at P-wetherbeei_contig18337:8..1361+ (Phaeothamnion wetherbeei SAG_119_79)
GGGGGTGCCGCCGCCGCCAACGTTGACCACGCCCGCAGCGCCTTCGCGGC
GGGTGGGCTTGGCATGCTGCGGGATCCCGAGGCGGACATCATCGAGCGGC
ACCAGATTGCCGCACGGGCCTACGTGCGGGCGGCGCAGCGAATGCAGCGC
ATCTTTCGGGCCGCTGCGCTGCCACGGGCGGCACGACGGCATCTGCGGCG
GCAACGGGCGGCGCTGGCCGTGCAGCGGGTCATCCGCGGGCACTTTGGGC
GCATCTACGTTGGCCTCTGGCGGCAGGTAAGTGCTATGCGCTGGAAGATT
GTGCTGCTCATGCTGCAAGGCAAGAGTCATCCGCTGCCTGTTACCATGGC
TAAAGCGTGCAGCTGTTTTTCCCCCTGCTTACATCGTCTGTTGCCTTCTG
ATCCCCACCGCTTCCTCAATCCTGCAGGTCAGCCACGCGGCGGCGACGCG
CATCGGCGCCACCGTCCGCTCTTGGATCCACCGCCGTCACTTCCGCGCCT
GGCGTCTGCGGGCGCGCGCCGCCTGCGTCGCCATCCAGCGCGCCTTTCGC
GGCTTCCTCGCACGCTCCTACGTAAAGTGGATCGCGACCCACGCTGCGGC
GGCGCGGCAGGTACAGCGGGCCGCCCGCGGATTCGTGGTGCGCCGCCGCT
GCCGCCGACTGCGTGCGCGCCTGTTCGCCGAGCGGGTGGTGTTTCCGGCA
GTCGTCACTGTGCAGCGGGTGGGGCGAGGATACTTAGGGCGGCGGGCGGC
GCGGCGGCGGCTGGCAGCGGAGATCTGGCGGCTGGTCGTGGTGCCGTCGG
CGGTCACGATCCAGCGCATGTGGCGCGGCCATTGCGGCCGGCGGGAGCGG
CGCCGCCGTCAGCGACAGGTCAAAGCGGCCACCGACCTCCAGCGATGCGG
CCGCGGCTTCCTCGGCCGTCGGCGCTGGCGCCGCCTGGAGCTGCACCGGC
GGCGCGGAATCCTCGCCACGCGGCTGCAGGCCGTCGCGCGGGGCTACATC
GACCGGGAGCTGCTGCGGGCGCGGCGCGAGCTCGGGTGGCGTGACGCCGT
CGCCGCACCCGCCGCCACACTGATGCAGGCGCAGTGGCGGGGCTTCGTCA
AGCGGCGCGGGCTGGCTGACCACCGCCGCCGCTGGCTGGCGGCGCTGCGC
GTCCAGATCTGGTGGCGGGGCGCTCTGGCCGCGGCCGCAGCCCGCGCCCG
CTGGCGCCGGGCCATGCGACAGATCCGCGATGGTGCCGCGACCCGCGTGC
AGTGCTGCTGGCGGGGTTTCACGGCGCGGCGGGAGCGGCGGCGGCGGCAC
GCCGAAGCCGTCTGGCGGCGGACCTTCGCGGGGCGAGTCATCATGCGGTG
CTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18337:8..1361+

>mRNA_P-wetherbeei_contig18337.1.1 ID=mRNA_P-wetherbeei_contig18337.1.1|Name=mRNA_P-wetherbeei_contig18337.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1203bp|location=Sequence derived from alignment at P-wetherbeei_contig18337:8..1361+ (Phaeothamnion wetherbeei SAG_119_79)
GGGGGTGCCGCCGCCGCCAACGTTGACCACGCCCGCAGCGCCTTCGCGGC
GGGTGGGCTTGGCATGCTGCGGGATCCCGAGGCGGACATCATCGAGCGGC
ACCAGATTGCCGCACGGGCCTACGTGCGGGCGGCGCAGCGAATGCAGCGC
ATCTTTCGGGCCGCTGCGCTGCCACGGGCGGCACGACGGCATCTGCGGCG
GCAACGGGCGGCGCTGGCCGTGCAGCGGGTCATCCGCGGGCACTTTGGGC
GCATCTACGTTGGCCTCTGGCGGCAGGTCAGCCACGCGGCGGCGACGCGC
ATCGGCGCCACCGTCCGCTCTTGGATCCACCGCCGTCACTTCCGCGCCTG
GCGTCTGCGGGCGCGCGCCGCCTGCGTCGCCATCCAGCGCGCCTTTCGCG
GCTTCCTCGCACGCTCCTACGTAAAGTGGATCGCGACCCACGCTGCGGCG
GCGCGGCAGGTACAGCGGGCCGCCCGCGGATTCGTGGTGCGCCGCCGCTG
CCGCCGACTGCGTGCGCGCCTGTTCGCCGAGCGGGTGGTGTTTCCGGCAG
TCGTCACTGTGCAGCGGGTGGGGCGAGGATACTTAGGGCGGCGGGCGGCG
CGGCGGCGGCTGGCAGCGGAGATCTGGCGGCTGGTCGTGGTGCCGTCGGC
GGTCACGATCCAGCGCATGTGGCGCGGCCATTGCGGCCGGCGGGAGCGGC
GCCGCCGTCAGCGACAGGTCAAAGCGGCCACCGACCTCCAGCGATGCGGC
CGCGGCTTCCTCGGCCGTCGGCGCTGGCGCCGCCTGGAGCTGCACCGGCG
GCGCGGAATCCTCGCCACGCGGCTGCAGGCCGTCGCGCGGGGCTACATCG
ACCGGGAGCTGCTGCGGGCGCGGCGCGAGCTCGGGTGGCGTGACGCCGTC
GCCGCACCCGCCGCCACACTGATGCAGGCGCAGTGGCGGGGCTTCGTCAA
GCGGCGCGGGCTGGCTGACCACCGCCGCCGCTGGCTGGCGGCGCTGCGCG
TCCAGATCTGGTGGCGGGGCGCTCTGGCCGCGGCCGCAGCCCGCGCCCGC
TGGCGCCGGGCCATGCGACAGATCCGCGATGGTGCCGCGACCCGCGTGCA
GTGCTGCTGGCGGGGTTTCACGGCGCGGCGGGAGCGGCGGCGGCGGCACG
CCGAAGCCGTCTGGCGGCGGACCTTCGCGGGGCGAGTCATCATGCGGTGC
TGG
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