mRNA_P-wetherbeei_contig1833.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1833.3.1
Unique NamemRNA_P-wetherbeei_contig1833.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1833.3.1 vs. uniprot
Match: A0A096LZ85_POEFO (Regulator of G-protein signaling 1-like n=1 Tax=Poecilia formosa TaxID=48698 RepID=A0A096LZ85_POEFO)

HSP 1 Score: 73.6 bits (179), Expect = 9.160e-15
Identity = 35/94 (37.23%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:    1 AFARTMLFEENLDFWMDVEAFRHGGHGGDMVAEAERLCATYVSEGSPRQVRDGNRREGLKLAAVLRWRLESECPAQRQIFDLLRNDAHPRYLSS 282
            AF R+   EENL F++  E +RH  +   +   A+R+CATY+  GSPR+V   ++   L L  +      S  PAQ++++ LL  D +PR+L S
Sbjct:   16 AFLRSEFSEENLQFYLACEQYRHSSNNFSLQRRAKRICATYIQPGSPREVNLDSKTRDLTLQLLQAPSRSSLLPAQKRVYSLLDTDCYPRFLES 109
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BLAST of mRNA_P-wetherbeei_contig1833.3.1 vs. uniprot
Match: A0A0S7H8D3_9TELE (RGS1 n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7H8D3_9TELE)

HSP 1 Score: 74.3 bits (181), Expect = 1.140e-13
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 1 
Query:    1 AFARTMLFEENLDFWMDVEAFRHGGHGGDMVAEAERLCATYVSEGSPRQVRDGNRREGLKLAAVLRWRLESECPAQRQIFDLLRNDAHPRYLSS 282
            AF R+   EENL F++  E +RH  +   +   A+ +CATY+  GSPR+V   N+   L L  +      S  PAQ++I+ LL  D +PR+L S
Sbjct:  232 AFLRSEFSEENLQFYLACEQYRHSSNNFSLQRRAKHICATYIQPGSPREVNLDNKTRDLTLQLLQAPSCSSLLPAQKRIYSLLDTDCYPRFLES 325
[Close]
BLAST of mRNA_P-wetherbeei_contig1833.3.1 vs. uniprot
Match: UPI001FAC26EA (regulator of G-protein signaling 21 isoform X2 n=1 Tax=Girardinichthys multiradiatus TaxID=208333 RepID=UPI001FAC26EA)

HSP 1 Score: 68.6 bits (166), Expect = 2.460e-12
Identity = 34/94 (36.17%), Postives = 53/94 (56.38%), Query Frame = 1 
Query:    1 AFARTMLFEENLDFWMDVEAFRHGGHGGDMVAEAERLCATYVSEGSPRQVRDGNRREGLKLAAVLRWRLESECPAQRQIFDLLRNDAHPRYLSS 282
            AF R+   EENL F++  E +RH  +   +   A+ +CATY+  G+PR+V   ++   L L  +      S  PAQ++I+ LL ND + R+L S
Sbjct:   73 AFLRSEFSEENLQFYLACEQYRHSSNNFSLQRRAKNICATYIQPGAPREVNLDSKTRDLTLQLLQAPSHTSLLPAQKRIYSLLDNDCYLRFLQS 166
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BLAST of mRNA_P-wetherbeei_contig1833.3.1 vs. uniprot
Match: A0A3B3SIF2_9TELE (Regulator of G-protein signaling 1-like n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3SIF2_9TELE)

HSP 1 Score: 70.1 bits (170), Expect = 3.940e-12
Identity = 38/95 (40.00%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:    1 AFARTMLFEENLDFWMDVEAFRHGGHGGDMVAEAERLCATYVSEGSPRQVR-DGNRREGLKLAAVLRWRLESECPAQRQIFDLLRNDAHPRYLSS 282
            AF R+   EENL F++  E +RH      +   A  +CATY+  G+ R+V  DG  RE L +  +      S CPAQR+I+ LL  D +PR+L S
Sbjct:  232 AFLRSEFSEENLQFYLACEQYRHSSTNFSLQRRARDICATYIEPGASREVNLDGKTRE-LTMQLLQAPSRSSLCPAQRRIYSLLDTDCYPRFLQS 325
[Close]
BLAST of mRNA_P-wetherbeei_contig1833.3.1 vs. uniprot
Match: A0A3Q2DTU1_CYPVA (Regulator of G-protein signaling 1-like n=4 Tax=Cyprinodon TaxID=28741 RepID=A0A3Q2DTU1_CYPVA)

HSP 1 Score: 69.3 bits (168), Expect = 7.480e-12
Identity = 33/94 (35.11%), Postives = 53/94 (56.38%), Query Frame = 1 
Query:    1 AFARTMLFEENLDFWMDVEAFRHGGHGGDMVAEAERLCATYVSEGSPRQVRDGNRREGLKLAAVLRWRLESECPAQRQIFDLLRNDAHPRYLSS 282
            AF R+   EENL F++  E +RH  +   +   A+ +CATY+  G+PR+V   ++   L L  +      S  PAQ++++ LL  D +PR+L S
Sbjct:  232 AFLRSEFSEENLQFYLACEQYRHSSNNFSLQRRAKDICATYIQRGAPREVNLDSKTRDLTLQLLQAPSHTSLLPAQKRVYSLLDTDCYPRFLQS 325
[Close]
BLAST of mRNA_P-wetherbeei_contig1833.3.1 vs. uniprot
Match: A0A3B5Q5Y4_XIPMA (RGS domain-containing protein n=7 Tax=Poeciliinae TaxID=586240 RepID=A0A3B5Q5Y4_XIPMA)

HSP 1 Score: 69.3 bits (168), Expect = 8.720e-12
Identity = 33/94 (35.11%), Postives = 53/94 (56.38%), Query Frame = 1 
Query:    1 AFARTMLFEENLDFWMDVEAFRHGGHGGDMVAEAERLCATYVSEGSPRQVRDGNRREGLKLAAVLRWRLESECPAQRQIFDLLRNDAHPRYLSS 282
            AF R+   EENL F++  E ++H  +   +   A+ +CA+Y+  GSPR+V   ++   L L  +      S  PAQ++I+ LL  D +PR+L S
Sbjct:  277 AFLRSEFSEENLQFYLACEQYKHSSNNFTLQRRAKNICASYIQNGSPREVNLDSKTRDLTLQLLQAPSRNSLLPAQKRIYSLLDTDCYPRFLES 370
[Close]
BLAST of mRNA_P-wetherbeei_contig1833.3.1 vs. uniprot
Match: UPI001FADAF16 (regulator of G-protein signaling 1 isoform X1 n=1 Tax=Girardinichthys multiradiatus TaxID=208333 RepID=UPI001FADAF16)

HSP 1 Score: 68.6 bits (166), Expect = 1.430e-11
Identity = 34/94 (36.17%), Postives = 53/94 (56.38%), Query Frame = 1 
Query:    1 AFARTMLFEENLDFWMDVEAFRHGGHGGDMVAEAERLCATYVSEGSPRQVRDGNRREGLKLAAVLRWRLESECPAQRQIFDLLRNDAHPRYLSS 282
            AF R+   EENL F++  E +RH  +   +   A+ +CATY+  G+PR+V   ++   L L  +      S  PAQ++I+ LL ND + R+L S
Sbjct:  234 AFLRSEFSEENLQFYLACEQYRHSSNNFSLQRRAKNICATYIQPGAPREVNLDSKTRDLTLQLLQAPSHTSLLPAQKRIYSLLDNDCYLRFLQS 327
[Close]
BLAST of mRNA_P-wetherbeei_contig1833.3.1 vs. uniprot
Match: UPI001F07DE16 (regulator of G-protein signaling 1 n=1 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F07DE16)

HSP 1 Score: 67.8 bits (164), Expect = 1.650e-11
Identity = 33/94 (35.11%), Postives = 52/94 (55.32%), Query Frame = 1 
Query:    1 AFARTMLFEENLDFWMDVEAFRHGGHGGDMVAEAERLCATYVSEGSPRQVRDGNRREGLKLAAVLRWRLESECPAQRQIFDLLRNDAHPRYLSS 282
            AF R+   EENL F++  E +RH  +   +   A  +CATY+  G+PR+V   ++   L +  +      S C AQ++I+ LL  D +PR+L S
Sbjct:  157 AFLRSEFSEENLQFYLACEQYRHSSNNFSLQRRARDICATYIQPGAPREVNLDSKTRELTMQLLQAPSHTSLCHAQKRIYTLLDTDCYPRFLQS 250
[Close]
BLAST of mRNA_P-wetherbeei_contig1833.3.1 vs. uniprot
Match: A0A7J5XBK0_DISMA (RGS domain-containing protein n=2 Tax=Notothenioidei TaxID=8205 RepID=A0A7J5XBK0_DISMA)

HSP 1 Score: 66.6 bits (161), Expect = 4.560e-11
Identity = 33/94 (35.11%), Postives = 52/94 (55.32%), Query Frame = 1 
Query:    1 AFARTMLFEENLDFWMDVEAFRHGGHGGDMVAEAERLCATYVSEGSPRQVRDGNRREGLKLAAVLRWRLESECPAQRQIFDLLRNDAHPRYLSS 282
            AF R+   EENL F+M  E ++H  +   +   A+ +C+TY+  G+PR+V   ++   L L  +      S   AQ++IF LL  D +PR+L S
Sbjct:  163 AFLRSEFSEENLQFYMACEQYKHSSNNFSLQRRAKEICSTYIQPGAPREVNLDSKTRDLSLQLLQAPSHASLSLAQKRIFSLLDTDCYPRFLQS 256
[Close]
BLAST of mRNA_P-wetherbeei_contig1833.3.1 vs. uniprot
Match: UPI001FB5B8D0 (regulator of G-protein signaling 8 n=1 Tax=Mugil cephalus TaxID=48193 RepID=UPI001FB5B8D0)

HSP 1 Score: 66.6 bits (161), Expect = 6.860e-11
Identity = 33/94 (35.11%), Postives = 52/94 (55.32%), Query Frame = 1 
Query:    1 AFARTMLFEENLDFWMDVEAFRHGGHGGDMVAEAERLCATYVSEGSPRQVRDGNRREGLKLAAVLRWRLESECPAQRQIFDLLRNDAHPRYLSS 282
            AF R+   EENL F++  E +RH  +   +   A+ +CATY+  GSPR+V   ++   L +  +      S   AQ++I+ LL  D +PR+L S
Sbjct:  226 AFLRSEFSEENLQFYLACEQYRHSSNNFSLQRRAKDICATYIEPGSPREVNLDSKTRDLTIQLLQAPSRTSLSHAQKRIYSLLDTDCYPRFLQS 319
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1833.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A096LZ85_POEFO9.160e-1537.23Regulator of G-protein signaling 1-like n=1 Tax=Po... [more]
A0A0S7H8D3_9TELE1.140e-1338.30RGS1 n=1 Tax=Poeciliopsis prolifica TaxID=188132 R... [more]
UPI001FAC26EA2.460e-1236.17regulator of G-protein signaling 21 isoform X2 n=1... [more]
A0A3B3SIF2_9TELE3.940e-1240.00Regulator of G-protein signaling 1-like n=1 Tax=Pa... [more]
A0A3Q2DTU1_CYPVA7.480e-1235.11Regulator of G-protein signaling 1-like n=4 Tax=Cy... [more]
A0A3B5Q5Y4_XIPMA8.720e-1235.11RGS domain-containing protein n=7 Tax=Poeciliinae ... [more]
UPI001FADAF161.430e-1136.17regulator of G-protein signaling 1 isoform X1 n=1 ... [more]
UPI001F07DE161.650e-1135.11regulator of G-protein signaling 1 n=1 Tax=Hypomes... [more]
A0A7J5XBK0_DISMA4.560e-1135.11RGS domain-containing protein n=2 Tax=Notothenioid... [more]
UPI001FB5B8D06.860e-1135.11regulator of G-protein signaling 8 n=1 Tax=Mugil c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1833contigP-wetherbeei_contig1833:4399..4935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog48698.ENSPFOP00000016365
Preferred namergs3
PFAMsAXIN1_TNKS_BD,Axin_b-cat_bind,DEP,DIX,G-gamma,PDZ,RGS
Model size282
Max annot lvl2759|Eukaryota
KEGG koko:K07524,ko:K16449,ko:K19838
KEGG Pathwayko04011,ko04360,map04011,map04360
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.03e-12
EggNOG OGsKOG3589@1|root,KOG3589@2759|Eukaryota
Descriptionpositive regulation of GTPase activity
Cds size267
COG categoryS
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186143.1047325-CDS-P-wetherbeei_contig1833:4398..44611683186143.1047325-CDS-P-wetherbeei_contig1833:4398..4461Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1833 4399..4461 -
1683186143.1184523-CDS-P-wetherbeei_contig1833:4716..49201683186143.1184523-CDS-P-wetherbeei_contig1833:4716..4920Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1833 4717..4920 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186143.1283002-UTR-P-wetherbeei_contig1833:4920..49351683186143.1283002-UTR-P-wetherbeei_contig1833:4920..4935Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1833 4921..4935 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1833.3.1prot_P-wetherbeei_contig1833.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1833 4399..4920 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1833.3.1

>prot_P-wetherbeei_contig1833.3.1 ID=prot_P-wetherbeei_contig1833.3.1|Name=mRNA_P-wetherbeei_contig1833.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=89bp
MLFEENLDFWMDVEAFRHGGHGGDMVAEAERLCATYVSEGSPRQVRDGNR
REGLKLAAVLRWRLESECPAQRQIFDLLRNDAHPRYLSS
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mRNA from alignment at P-wetherbeei_contig1833:4399..4935-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1833.3.1 ID=mRNA_P-wetherbeei_contig1833.3.1|Name=mRNA_P-wetherbeei_contig1833.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig1833:4399..4935- (Phaeothamnion wetherbeei SAG_119_79)
GCCTTCGCGCGGACGATGCTCTTCGAGGAGAATTTGGACTTCTGGATGGA
TGTGGAAGCATTCCGCCACGGCGGCCATGGTGGCGACATGGTGGCCGAGG
CGGAGCGGCTGTGCGCGACGTACGTCAGCGAGGGGTCGCCGCGGCAGGTG
AGAGATGGAAATAGAAGAGAGGGATTGAAGTTGGCAGCGGTTTTGCGGTG
GCGACTGGAAAGTGAATGCGTCTCCCCACGTTATGCTTCTTCGGTTCCAT
CAGCTGGCACCCCTCTCGGGCATCCTCGGCTGACCCGATTGTTCATTTTC
TGTTCCACCTCCGTTTTTCTTCCCGTTTCTGTTTTTCAGGTGAACCTGTC
GAGCGCCGTACGTGTCGAGACGGAGGGCGTTGTCTGCGCGCTGCTCGCCA
TTCTCCGCGGCGAGTCCAAGGTCGACACGGCCACGTACGCCGACGCCGTC
GGCGGCCTCCGCGACGCCTTCAAGCCGGCGCAGCGGCAGATCTTCGACCT
GCTGCGCAACGATGCGCACCCGCGCTACCTTTCGTCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1833:4399..4935-

>mRNA_P-wetherbeei_contig1833.3.1 ID=mRNA_P-wetherbeei_contig1833.3.1|Name=mRNA_P-wetherbeei_contig1833.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig1833:4399..4935- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCTTCGAGGAGAATTTGGACTTCTGGATGGATGTGGAAGCATTCCG
CCACGGCGGCCATGGTGGCGACATGGTGGCCGAGGCGGAGCGGCTGTGCG
CGACGTACGTCAGCGAGGGGTCGCCGCGGCAGGTGAGAGATGGAAATAGA
AGAGAGGGATTGAAGTTGGCAGCGGTTTTGCGGTGGCGACTGGAAAGTGA
ATGCCCGGCGCAGCGGCAGATCTTCGACCTGCTGCGCAACGATGCGCACC
CGCGCTACCTTTCGTCG
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