mRNA_P-wetherbeei_contig1830.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1830.3.1
Unique NamemRNA_P-wetherbeei_contig1830.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1830.3.1 vs. uniprot
Match: A0A836CME0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CME0_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.090e-11
Identity = 119/447 (26.62%), Postives = 167/447 (37.36%), Query Frame = 3 
Query:  279 SAAELSVQELPAPSLLECPFVRHNYRC-VPLLLNNSTSDAIDAEEGSTEFGTSFERSDFSRRCGGDEAPLLTPNAKILFAGSSHIREIAQALICANAASLVEIKVQGGDRFQECKWSKDYKETASCSARDVLDGPCLLEP--WPLNTAGSDSEYDGRPEWTNF------------KDDLSSYRFSNGAFVYVACNHAIITTTEGVGKPGSGDAAESRLRGFDQLAAV---FGFAPSSLTGVVVHPGHNFRFGAGYFRGMSVPDSENG-SGAVPPCCRVPAVARTPVATGLVTADSGDDEVLQYPHPDGVQICKALKLPENENLCLINVVAFLGDIADAGFKGAAVVLDRTW----YGSPGDAAAAMLGSRDCLDRGTSGGRGVGNRTFSFEVGFLDLSLVMGGRSCSAPTCSQDIGDTGHQCLWLEEARLAGHPFDAARILLRMLSG 1550
            +AA    Q  P P    CPFVR NY C    +  N  S   DA  G+            S          L    ++LF G+SHIRE+A+AL+C N A L  +                +    +  AR ++     + P  WP   A   ++ D                    +DD ++Y FSNGA +++A N       EG   P S            QL+AV     F    LT VV + G+        FRG ++     G + A+PP   +PA  RT     L T   G         P G       + P      LI++      +A A F G+ VV D+      +  P D AA    +        +GGR        F++ ++D+   + G  CSA          GHQCL        G P D ARI+LR + G
Sbjct:   38 AAAAQRGQPAPQPP---CPFVRSNYMCSAEAVAANWRSCCADASCGAP----------CSSGXXXXXXXALRARTRVLFFGNSHIRELAEALVCDNLALLTGVT---------------FMPNVTADARTLMMRGHTVPPLHWPYLLAAGLTDPDAGXXXXXXXXXXXXXXXEAPQDDYATYHFSNGALIHMAINVPPTLIAEGEAAPASSPF---------QLSAVADYLNFKFEDLTAVVANVGN--------FRGWAIKAFCGGDAAALPP--PLPAFERT--CDDLATYTPGT--------PLG-------RTP------LIHLPTLALRLAAARFAGSLVVTDQVMEPVTHEPPLDLAATTAAAA------AAGGR--------FKLSYVDMGSFIIGHQCSAEGGGACTTRPGHQCL-------PGPPNDGARIVLRQIYG 393
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1830.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CME0_9STRA1.090e-1126.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1830contigP-wetherbeei_contig1830:3538..6112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1998
Hectar predicted targeting categoryother localisation
Exons3
Cds size1464
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186142.113173-UTR-P-wetherbeei_contig1830:3537..39521683186142.113173-UTR-P-wetherbeei_contig1830:3537..3952Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1830 3538..3952 -
1683186142.1500437-UTR-P-wetherbeei_contig1830:5993..61121683186142.1500437-UTR-P-wetherbeei_contig1830:5993..6112Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1830 5994..6112 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186142.1226358-CDS-P-wetherbeei_contig1830:3952..47751683186142.1226358-CDS-P-wetherbeei_contig1830:3952..4775Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1830 3953..4775 -
1683186142.1315234-CDS-P-wetherbeei_contig1830:5099..53141683186142.1315234-CDS-P-wetherbeei_contig1830:5099..5314Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1830 5100..5314 -
1683186142.1405513-CDS-P-wetherbeei_contig1830:5567..59931683186142.1405513-CDS-P-wetherbeei_contig1830:5567..5993Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1830 5568..5993 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1830.3.1prot_P-wetherbeei_contig1830.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1830 3953..5993 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1830.3.1

>prot_P-wetherbeei_contig1830.3.1 ID=prot_P-wetherbeei_contig1830.3.1|Name=mRNA_P-wetherbeei_contig1830.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=488bp
MRVLSSRSCEDRWKLTFAQRNLQGGQRRDHSAVFLLLFGLLVQSVTPSFL
ARRSAAELSVQELPAPSLLECPFVRHNYRCVPLLLNNSTSDAIDAEEGST
EFGTSFERSDFSRRCGGDEAPLLTPNAKILFAGSSHIREIAQALICANAA
SLVEIKVQGGDRFQECKWSKDYKETASCSARDVLDGPCLLEPWPLNTAGS
DSEYDGRPEWTNFKDDLSSYRFSNGAFVYVACNHAIITTTEGVGKPGSGD
AAESRLRGFDQLAAVFGFAPSSLTGVVVHPGHNFRFGAGYFRGMSVPDSE
NGSGAVPPCCRVPAVARTPVATGLVTADSGDDEVLQYPHPDGVQICKALK
LPENENLCLINVVAFLGDIADAGFKGAAVVLDRTWYGSPGDAAAAMLGSR
DCLDRGTSGGRGVGNRTFSFEVGFLDLSLVMGGRSCSAPTCSQDIGDTGH
QCLWLEEARLAGHPFDAARILLRMLSGQKLPYGCPSQ*
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mRNA from alignment at P-wetherbeei_contig1830:3538..6112-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1830.3.1 ID=mRNA_P-wetherbeei_contig1830.3.1|Name=mRNA_P-wetherbeei_contig1830.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2575bp|location=Sequence derived from alignment at P-wetherbeei_contig1830:3538..6112- (Phaeothamnion wetherbeei SAG_119_79)
TTGCGAAGGGAATATATTCGTGACAGCTCACTTTTTCCGGACTAAATTGA
TTTCATCCGTCATCTCCTTCCCAGGATTGTCGTCTTCTCCTTCTCGGAAA
CGAGTGCTGTTGCTTGCCTATGAGGGTGCTCTCGAGCCGAAGTTGTGAAG
ACCGATGGAAACTAACGTTTGCACAACGCAATCTCCAAGGAGGGCAGAGG
CGAGACCATAGCGCGGTTTTCCTTCTGCTCTTCGGTCTCCTCGTGCAAAG
TGTCACCCCGTCCTTTCTGGCCAGGAGGTCTGCTGCAGAGCTGTCAGTAC
AGGAGCTTCCGGCCCCTTCACTTTTAGAGTGCCCTTTCGTCCGGCACAAT
TATCGATGCGTGCCGCTGCTGCTCAACAACAGCACATCGGATGCGATAGA
CGCAGAGGAAGGCAGCACAGAATTCGGCACCTCTTTCGAACGGAGCGACT
TCTCAAGGCGCTGCGGTGGTGACGAGGCGCCATTGCTTACCCCAAACGCG
AAGATTCTGTTTGCCGGGAGTAGCCACATCAGGGAGATTGCTCAGGCGAG
TTTCTCTGCCTTCTCAACCCGTCCTGTATCATCTGTTTCTCTGGCTCGCT
CTACTGTCGTAGCAGATGCAGCACTTGCAAGGCAAGAATGAAGAGGATGT
GAGAGGGAGGGGGAGAGAAACTTCCGACTCACATCCATCATTCTCTCTCT
ATGTTCGGAATGACGTACAGCTCTTAGCTGATCATTTCCGTCAAAATATG
AAACGCTTCTCTCCCCTACTTCACGCACAAAACGAGAAACGGAAACAGGC
GCTTATCTGTGCAAACGCGGCATCGCTGGTCGAGATCAAGGTGCAGGGAG
GAGACCGGTTCCAAGAATGCAAATGGAGCAAAGACTACAAGGAGACCGCC
TCGTGCTCAGCTCGCGATGTTTTGGACGGCCCTTGCCTGCTGGAGCCGTG
GCCGCTTAACACTGCCGGGTCGGACTCGGAGTATGACGGACGACCAGAGT
GGACGAATTTCAAGTAAGTTTTTATTTCCTGGCTCTCGCTCTTTGAATAA
CTGTGTCCCTTCAGCTGCGAAATGTACGAGTCGGTTGGGGAAAGATTGGG
ACTCTGAGCGATTTCACGAGAAAGGAGATCGTCGGCGCTAACTCGTGGCC
ATTCCCTTGCAAGTAGCTCGTTCGTTCTTGCCTCAATACACGTTGCATGG
TTCAAAAGTGCTTCGCAGCAAATATTGTGCGGTCAAGACCTGTCCAGCGC
GCAACCTAAGCTGGCGGTGGCTTACACCTTTTCTGCGCTCGATCTTCGTC
CCTTCCTTGATATGTTCTTCCCTTCCTTTCCGCACAGGGACGATCTCTCC
TCCTATCGGTTTTCCAATGGCGCCTTCGTTTATGTCGCCTGCAACCACGC
AATCATCACCACGACAGAGGGCGTCGGTAAACCCGGCAGCGGTGACGCCG
CAGAGAGCCGGCTTCGCGGCTTCGACCAGCTTGCAGCCGTCTTCGGCTTT
GCGCCGTCGTCGCTGACGGGCGTGGTTGTGCACCCCGGCCACAACTTTCG
GTTCGGAGCCGGTTACTTCCGAGGAATGTCTGTGCCTGACTCGGAAAACG
GCAGCGGCGCCGTTCCACCATGCTGCCGGGTGCCGGCTGTTGCCCGTACA
CCTGTTGCCACCGGTCTTGTCACAGCCGACTCCGGCGATGATGAAGTTCT
TCAGTACCCGCACCCGGACGGCGTGCAGATCTGCAAGGCGCTGAAGCTAC
CGGAGAACGAGAATCTGTGCCTTATCAATGTCGTAGCTTTCCTCGGCGAC
ATTGCCGACGCCGGATTCAAGGGGGCGGCCGTCGTTCTCGACAGGACTTG
GTATGGCAGCCCAGGCGATGCCGCTGCGGCCATGTTGGGCAGCCGCGACT
GCTTGGATCGCGGCACTAGCGGCGGACGCGGCGTCGGAAACCGCACATTC
TCGTTCGAGGTGGGCTTTTTGGATTTGTCCCTCGTGATGGGCGGGCGATC
CTGCTCTGCGCCAACGTGCAGCCAGGACATAGGGGATACGGGTCACCAAT
GCCTGTGGCTCGAAGAGGCTCGGCTGGCGGGGCACCCGTTCGACGCGGCG
CGTATCTTGCTGCGTATGCTCTCCGGACAAAAACTGCCTTATGGTTGTCC
CAGCCAATGAGTCGTGAGGACGGTTTTAACAGCGCGCCTGTGCGAAGCAA
TGCGCTGCCGCCCATGGCTGCATCGCCACCCATGTCGCCTCCAAGGAAAA
AGCGCCTGACTAGAGCGAACCAAAACCCAAACCTTCAATCCGGGGGCAGT
GTGAGCGCCCGAAAGAGACTTCAATGCAAGCAAGAGCAGTGCTAGCAACA
AGAAGCGTCCCATAGAGTTCCGTCTTGCCAGGGGTAGGATTGAAGAATTC
CGTCCCGTCGGCGCTGTGGGGATGGCGCGGTGCGTTTCGACGTCGGAGGG
CGCGACTGAGGCGGCAGCCGGGCTTTCATGACGGTAGGAAGGGCGCGCGC
ACGCATTTTCCACGTTTTAATACGTTATCGCGGGGGTTAAGGCTGAACAA
ACCTAGACCCCTCGTACAGGAATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1830:3538..6112-

>mRNA_P-wetherbeei_contig1830.3.1 ID=mRNA_P-wetherbeei_contig1830.3.1|Name=mRNA_P-wetherbeei_contig1830.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1464bp|location=Sequence derived from alignment at P-wetherbeei_contig1830:3538..6112- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGGTGCTCTCGAGCCGAAGTTGTGAAGACCGATGGAAACTAACGTT
TGCACAACGCAATCTCCAAGGAGGGCAGAGGCGAGACCATAGCGCGGTTT
TCCTTCTGCTCTTCGGTCTCCTCGTGCAAAGTGTCACCCCGTCCTTTCTG
GCCAGGAGGTCTGCTGCAGAGCTGTCAGTACAGGAGCTTCCGGCCCCTTC
ACTTTTAGAGTGCCCTTTCGTCCGGCACAATTATCGATGCGTGCCGCTGC
TGCTCAACAACAGCACATCGGATGCGATAGACGCAGAGGAAGGCAGCACA
GAATTCGGCACCTCTTTCGAACGGAGCGACTTCTCAAGGCGCTGCGGTGG
TGACGAGGCGCCATTGCTTACCCCAAACGCGAAGATTCTGTTTGCCGGGA
GTAGCCACATCAGGGAGATTGCTCAGGCGCTTATCTGTGCAAACGCGGCA
TCGCTGGTCGAGATCAAGGTGCAGGGAGGAGACCGGTTCCAAGAATGCAA
ATGGAGCAAAGACTACAAGGAGACCGCCTCGTGCTCAGCTCGCGATGTTT
TGGACGGCCCTTGCCTGCTGGAGCCGTGGCCGCTTAACACTGCCGGGTCG
GACTCGGAGTATGACGGACGACCAGAGTGGACGAATTTCAAGGACGATCT
CTCCTCCTATCGGTTTTCCAATGGCGCCTTCGTTTATGTCGCCTGCAACC
ACGCAATCATCACCACGACAGAGGGCGTCGGTAAACCCGGCAGCGGTGAC
GCCGCAGAGAGCCGGCTTCGCGGCTTCGACCAGCTTGCAGCCGTCTTCGG
CTTTGCGCCGTCGTCGCTGACGGGCGTGGTTGTGCACCCCGGCCACAACT
TTCGGTTCGGAGCCGGTTACTTCCGAGGAATGTCTGTGCCTGACTCGGAA
AACGGCAGCGGCGCCGTTCCACCATGCTGCCGGGTGCCGGCTGTTGCCCG
TACACCTGTTGCCACCGGTCTTGTCACAGCCGACTCCGGCGATGATGAAG
TTCTTCAGTACCCGCACCCGGACGGCGTGCAGATCTGCAAGGCGCTGAAG
CTACCGGAGAACGAGAATCTGTGCCTTATCAATGTCGTAGCTTTCCTCGG
CGACATTGCCGACGCCGGATTCAAGGGGGCGGCCGTCGTTCTCGACAGGA
CTTGGTATGGCAGCCCAGGCGATGCCGCTGCGGCCATGTTGGGCAGCCGC
GACTGCTTGGATCGCGGCACTAGCGGCGGACGCGGCGTCGGAAACCGCAC
ATTCTCGTTCGAGGTGGGCTTTTTGGATTTGTCCCTCGTGATGGGCGGGC
GATCCTGCTCTGCGCCAACGTGCAGCCAGGACATAGGGGATACGGGTCAC
CAATGCCTGTGGCTCGAAGAGGCTCGGCTGGCGGGGCACCCGTTCGACGC
GGCGCGTATCTTGCTGCGTATGCTCTCCGGACAAAAACTGCCTTATGGTT
GTCCCAGCCAATGA
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