mRNA_P-wetherbeei_contig18273.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18273.1.1
Unique NamemRNA_P-wetherbeei_contig18273.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18273.1.1 vs. uniprot
Match: A0A835YW79_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW79_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 4.840e-15
Identity = 49/101 (48.51%), Postives = 62/101 (61.39%), Query Frame = 1 
Query:    1 MAFCTVNRRLFTSGADATIRAWTLQR--EAPDGGGGYRVSLRPHAVMRRHTEVVQELLCVRDDDVEGGCCLVSAALDRCVHLWDTAACSFV--QVGGWAGI 291
            +A+  V++RLFT G  A+I  W L R  E   G G     LR  A + +HT+VV  LL VRDDDVEGG C+VSAALDR V+LWD     ++  +VG  A I
Sbjct:  178 LAWDGVSQRLFTVGGSASIAVWELDRTNEVETGLG-----LRRIATLTKHTDVVLALLAVRDDDVEGGHCIVSAALDRKVYLWDADKLEYMACKVGNTAAI 273
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BLAST of mRNA_P-wetherbeei_contig18273.1.1 vs. uniprot
Match: D7G4K6_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K6_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 1.050e-5
Identity = 26/47 (55.32%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:  130 VMRRHTEVVQELLCVRDDDVEGGCCLVSAALDRCVHLWDTAACSFVQ 270
            V+RRHT+V+Q+LL V   + EGG  LVS  LDR V +WD A  +FVQ
Sbjct:   15 VLRRHTDVIQDLLAVSGTETEGGQRLVSCGLDRRVCIWDIAKGTFVQ 61
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18273.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YW79_9STRA4.840e-1548.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G4K6_ECTSI1.050e-555.32EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18273contigP-wetherbeei_contig18273:953..1243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G4K6
Model size291
Max annot lvl2759|Eukaryota
KEGG koko:K17985
KEGG Pathwayko04137,ko04140,map04137,map04140
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.73e-06
EggNOG OGsKOG0266@1|root,KOG0266@2759|Eukaryota
DescriptionWD repeat-containing protein
Cds size291
COG categoryB
BRITEko00000,ko00001,ko03029,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186141.5111146-CDS-P-wetherbeei_contig18273:952..12431683186141.5111146-CDS-P-wetherbeei_contig18273:952..1243Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18273 953..1243 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18273.1.1prot_P-wetherbeei_contig18273.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18273 953..1243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18273.1.1

>prot_P-wetherbeei_contig18273.1.1 ID=prot_P-wetherbeei_contig18273.1.1|Name=mRNA_P-wetherbeei_contig18273.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=97bp
MAFCTVNRRLFTSGADATIRAWTLQREAPDGGGGYRVSLRPHAVMRRHTE
VVQELLCVRDDDVEGGCCLVSAALDRCVHLWDTAACSFVQVGGWAGI
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mRNA from alignment at P-wetherbeei_contig18273:953..1243+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18273.1.1 ID=mRNA_P-wetherbeei_contig18273.1.1|Name=mRNA_P-wetherbeei_contig18273.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig18273:953..1243+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTTTCTGCACGGTCAACAGGCGCCTCTTCACGAGCGGCGCCGATGC
CACCATCCGCGCCTGGACGCTGCAGCGCGAGGCGCCCGACGGAGGCGGCG
GCTACAGAGTCTCGCTGAGGCCGCACGCCGTGATGCGGCGGCACACGGAG
GTGGTGCAGGAGCTGTTGTGCGTGCGGGACGACGACGTGGAGGGCGGCTG
CTGCCTCGTATCGGCGGCGCTCGACCGCTGCGTCCACTTGTGGGACACCG
CCGCCTGCTCCTTCGTACAGGTGGGGGGATGGGCGGGGATA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18273:953..1243+

>mRNA_P-wetherbeei_contig18273.1.1 ID=mRNA_P-wetherbeei_contig18273.1.1|Name=mRNA_P-wetherbeei_contig18273.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig18273:953..1243+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTTTCTGCACGGTCAACAGGCGCCTCTTCACGAGCGGCGCCGATGC
CACCATCCGCGCCTGGACGCTGCAGCGCGAGGCGCCCGACGGAGGCGGCG
GCTACAGAGTCTCGCTGAGGCCGCACGCCGTGATGCGGCGGCACACGGAG
GTGGTGCAGGAGCTGTTGTGCGTGCGGGACGACGACGTGGAGGGCGGCTG
CTGCCTCGTATCGGCGGCGCTCGACCGCTGCGTCCACTTGTGGGACACCG
CCGCCTGCTCCTTCGTACAGGTGGGGGGATGGGCGGGGATA
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