mRNA_P-wetherbeei_contig18264.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18264.3.1
Unique NamemRNA_P-wetherbeei_contig18264.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18264.3.1 vs. uniprot
Match: A0A836CD79_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD79_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 5.260e-7
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:   19 WDDGERELLEEGLVCFPPHAVSNMTLYIKIAAMLPRKNVRDVATAIRARQENQKA 183
            WD  ER  L+ GL  + P   SNMTLY+K+AAMLP+K VRDVA A+   Q+ ++A
Sbjct:  261 WDADERATLQRGLERYSPARHSNMTLYVKVAAMLPKKTVRDVAAAVWETQQARRA 315
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BLAST of mRNA_P-wetherbeei_contig18264.3.1 vs. uniprot
Match: D7FV74_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV74_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 8.870e-6
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:   13 SDWDDGERELLEEGLVCFPPHAVSNMTLYIKIAAMLPRKNVRDVATAIRARQENQK 180
            S WD  E+ +LE+GL  +P    SNM +YI+IAA LP+K VRDVA  +R  Q   +
Sbjct:   56 SSWDKNEQRVLEDGLRYYPHDQHSNMLIYIRIAAGLPKKTVRDVAHHLRHMQARSR 111
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18264.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CD79_9STRA5.260e-752.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FV74_ECTSI8.870e-648.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18264contigP-wetherbeei_contig18264:295..777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog554065.XP_005845533.1
PFAMsDUF3755
Model size484
Max annot lvl33090|Viridiplantae
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.72e-05
EggNOG OGs28JZ2@1|root,2QSDG@2759|Eukaryota,37QGX@33090|Viridiplantae
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_007290.1
DescriptionProtein of unknown function (DUF3755)
Cds size483
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186141.3643954-CDS-P-wetherbeei_contig18264:294..7771683186141.3643954-CDS-P-wetherbeei_contig18264:294..777Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18264 295..777 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18264.3.1prot_P-wetherbeei_contig18264.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18264 295..777 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18264.3.1

>prot_P-wetherbeei_contig18264.3.1 ID=prot_P-wetherbeei_contig18264.3.1|Name=mRNA_P-wetherbeei_contig18264.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=161bp
MSTESDWDDGERELLEEGLVCFPPHAVSNMTLYIKIAAMLPRKNVRDVAT
AIRARQENQKAAAAAGRLTQKRQRSSSFQQKQQQQQAQAEEAVLAAEAAS
GYEVAAAASAAAAAVVSMTRAARMPDPALQAKINALVAENMGLLMTVRDN
IMVGRVAENYA
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mRNA from alignment at P-wetherbeei_contig18264:295..777-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18264.3.1 ID=mRNA_P-wetherbeei_contig18264.3.1|Name=mRNA_P-wetherbeei_contig18264.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig18264:295..777- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTACGGAATCCGATTGGGACGATGGAGAACGGGAGCTCTTGGAAGA
AGGGCTTGTGTGCTTCCCGCCGCACGCGGTGAGCAACATGACTCTATACA
TCAAGATTGCTGCGATGCTGCCGCGAAAAAACGTGCGCGACGTCGCCACC
GCCATCCGCGCGAGGCAAGAAAATCAAAAGGCGGCTGCCGCAGCAGGAAG
GCTGACGCAGAAGCGGCAACGGAGCTCGTCCTTCCAGCAGAAGCAGCAAC
AACAGCAGGCGCAGGCAGAAGAGGCCGTGCTGGCGGCGGAGGCAGCGTCT
GGCTACGAGGTGGCGGCGGCGGCGTCCGCAGCGGCGGCGGCAGTTGTCAG
CATGACCCGCGCGGCCCGCATGCCAGACCCGGCGCTGCAGGCCAAGATCA
ACGCCCTCGTCGCGGAGAACATGGGCCTGCTTATGACGGTCCGCGACAAC
ATCATGGTGGGGCGCGTCGCTGAAAACTATGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18264:295..777-

>mRNA_P-wetherbeei_contig18264.3.1 ID=mRNA_P-wetherbeei_contig18264.3.1|Name=mRNA_P-wetherbeei_contig18264.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig18264:295..777- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTACGGAATCCGATTGGGACGATGGAGAACGGGAGCTCTTGGAAGA
AGGGCTTGTGTGCTTCCCGCCGCACGCGGTGAGCAACATGACTCTATACA
TCAAGATTGCTGCGATGCTGCCGCGAAAAAACGTGCGCGACGTCGCCACC
GCCATCCGCGCGAGGCAAGAAAATCAAAAGGCGGCTGCCGCAGCAGGAAG
GCTGACGCAGAAGCGGCAACGGAGCTCGTCCTTCCAGCAGAAGCAGCAAC
AACAGCAGGCGCAGGCAGAAGAGGCCGTGCTGGCGGCGGAGGCAGCGTCT
GGCTACGAGGTGGCGGCGGCGGCGTCCGCAGCGGCGGCGGCAGTTGTCAG
CATGACCCGCGCGGCCCGCATGCCAGACCCGGCGCTGCAGGCCAAGATCA
ACGCCCTCGTCGCGGAGAACATGGGCCTGCTTATGACGGTCCGCGACAAC
ATCATGGTGGGGCGCGTCGCTGAAAACTATGCG
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