mRNA_P-wetherbeei_contig1826.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1826.3.1
Unique NamemRNA_P-wetherbeei_contig1826.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1826.3.1 vs. uniprot
Match: D7FRV6_ECTSI (Complex1_LYR_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRV6_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 1.310e-17
Identity = 40/84 (47.62%), Postives = 60/84 (71.43%), Query Frame = 2
Query:  200 MQAPTRSMAMGLYRSLRKTAKSMTDYNYREYSLRRSRLGFDQAKELEGADAMAAYVKGLQDLQMLKRQALIGSLYPHEQSVMES 451
            M  P+R+  +GLY+ LR+    + DYNYREY+LRR+R GF+ A+     +A AA+ KG ++L++++RQA I  LYPH+ SVME+
Sbjct:    1 MAQPSRTAVLGLYKGLRRQGALLMDYNYREYALRRARRGFELARGFAPEEAEAAFKKGQRELEIVRRQAAISQLYPHQTSVMET 84          
BLAST of mRNA_P-wetherbeei_contig1826.3.1 vs. uniprot
Match: A0A0G4IIG7_PLABS (Complex1_LYR_dom domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IIG7_PLABS)

HSP 1 Score: 70.9 bits (172), Expect = 7.290e-13
Identity = 32/81 (39.51%), Postives = 54/81 (66.67%), Query Frame = 2
Query:  209 PTRSMAMGLYRSLRKTAKSMTDYNYREYSLRRSRLGFDQAKELEGADAMAAYVKGLQDLQMLKRQALIGSLYPHEQSVMES 451
            PTRS  + LY+++R+      D+N+REY +RR+R  F+  +   GADA   Y KG++DLQ+++RQ+ +  +Y H ++V E+
Sbjct:    6 PTRSACLALYKNVRRAGLQFKDFNFREYVVRRARERFEAGRAATGADAARLYEKGIEDLQVVRRQSTLNRMYAHGRNVAET 86          
BLAST of mRNA_P-wetherbeei_contig1826.3.1 vs. uniprot
Match: A0A7S1G6K1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G6K1_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 9.100e-12
Identity = 36/70 (51.43%), Postives = 48/70 (68.57%), Query Frame = 2
Query:  215 RSMAMGLYRSLRKTAKSMTDYNYREYSLRRSRLGFDQAKELEGADAMAAYVKGLQDLQMLKRQALIGSLY 424
            RS A+ LYRS  + AK   DYN+REY+LRR+R GF++ +   G  A AA  +G   L++L+RQALI SLY
Sbjct:    7 RSQAISLYRSFVREAKGFKDYNFREYALRRARAGFEENRAASGDAAAAALAEGNAALEVLRRQALISSLY 76          
BLAST of mRNA_P-wetherbeei_contig1826.3.1 vs. uniprot
Match: A0A0B6ZHZ5_9EUPU (Complex1_LYR_dom domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6ZHZ5_9EUPU)

HSP 1 Score: 66.6 bits (161), Expect = 3.760e-11
Identity = 36/85 (42.35%), Postives = 55/85 (64.71%), Query Frame = 2
Query:  200 MQAPTRSMAMGLYRSLRKTAKSMTDYNYREYSLRRSRLGFDQAKELEGAD-AMAAYVKGLQDLQMLKRQALIGSLYPHEQSVMES 451
            M APTRS  + LY+ + K  + +TDYN+R Y+LRR+   F + K +  AD   A + K  ++L MLKRQ++IG L+  ++ V+ES
Sbjct:    5 MAAPTRSTILSLYKQMLKEGQKITDYNFRRYALRRTMDAFKENKTVTDADKCQALFKKAQENLDMLKRQSIIGQLFGSDKLVIES 89          
BLAST of mRNA_P-wetherbeei_contig1826.3.1 vs. uniprot
Match: A0A6H5I7Q7_9HYME (Complex1_LYR_dom domain-containing protein n=2 Tax=Trichogramma TaxID=7490 RepID=A0A6H5I7Q7_9HYME)

HSP 1 Score: 65.9 bits (159), Expect = 5.890e-11
Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 2
Query:  212 TRSMAMGLYRSLRKTAKSMTDYNYREYSLRRSRLGFDQAKELEGADAMAA-YVKGLQDLQMLKRQALIGSLYPHEQSVME 448
            +R + + LYR L K +K    YNYREY+LR+ R  F Q K LE +  +   Y KGL+ L+MLKRQ LIG+LY  ++ V+E
Sbjct:    3 SRKVVLNLYRDLLKESKKWASYNYREYALRKIRHEFRQNKALEDSTKINDFYNKGLESLEMLKRQVLIGNLYKTDKLVIE 82          
BLAST of mRNA_P-wetherbeei_contig1826.3.1 vs. uniprot
Match: A0A0H5R7G6_9EUKA (Complex1_LYR_dom domain-containing protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R7G6_9EUKA)

HSP 1 Score: 65.5 bits (158), Expect = 1.270e-10
Identity = 30/73 (41.10%), Postives = 49/73 (67.12%), Query Frame = 2
Query:  206 APTRSMAMGLYRSLRKTAKSMTDYNYREYSLRRSRLGFDQAKELEGADAMAAYVKGLQDLQMLKRQALIGSLY 424
            AP+RS  + LYR L +   +  DYN+R YS+RR+R  F  ++E    +++  Y+ GL++LQ+LKRQA + ++Y
Sbjct:   12 APSRSAVLCLYRQLMRAGNTFHDYNFRSYSVRRTRERFIASREASAEESLTLYISGLKELQVLKRQAALNNMY 84          
BLAST of mRNA_P-wetherbeei_contig1826.3.1 vs. uniprot
Match: UPI00035A1C09 (LYR motif-containing protein 4 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00035A1C09)

HSP 1 Score: 63.5 bits (153), Expect = 5.080e-10
Identity = 35/85 (41.18%), Postives = 55/85 (64.71%), Query Frame = 2
Query:  200 MQAPTRSMAMGLYRSLRKTAKSMTDYNYREYSLRRSRLGFDQAKELEGADAMAAYV-KGLQDLQMLKRQALIGSLYPHEQSVMES 451
            M A TR+  + LY+ L K +K +TDYN+R Y+LRR+R  F + K +  A  + A V K  ++L+ML+RQA +  L+  E+ ++ES
Sbjct:    1 MAASTRTKVLSLYKELLKESKRVTDYNFRNYALRRTRDAFKENKAITDAGQIQALVVKAQENLEMLRRQATVSQLFGSEKLIIES 85          
BLAST of mRNA_P-wetherbeei_contig1826.3.1 vs. uniprot
Match: A0A6P3DAG8_BOMTE (LYR motif-containing protein 4 n=5 Tax=Bombus TaxID=28641 RepID=A0A6P3DAG8_BOMTE)

HSP 1 Score: 63.2 bits (152), Expect = 7.490e-10
Identity = 34/87 (39.08%), Postives = 55/87 (63.22%), Query Frame = 2
Query:  200 MQAPTRSMAMGLYRSLRKTAKSMTDYNYREYSLRRSRLGFDQAKELEGADAM-AAYVKGLQDLQMLKRQALIGSLYPHEQSVMESTE 457
            M A +R + + LYR+L + +K    YNYR Y+LR+ R  F+Q K ++  + +   Y +GL+ LQ++KRQ  IG+LY     ++E+TE
Sbjct:    1 MMASSRKVILNLYRNLIRESKKWNSYNYRMYALRKIRHEFEQNKTIQDKEKINECYNRGLESLQIIKRQVTIGNLYSTRPLIIETTE 87          
BLAST of mRNA_P-wetherbeei_contig1826.3.1 vs. uniprot
Match: UPI001B88CBDA (LYR motif-containing protein 4-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88CBDA)

HSP 1 Score: 61.6 bits (148), Expect = 2.880e-9
Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 2
Query:  200 MQAPTRSMAMGLYRSLRKTAKSMTDYNYREYSLRRSRLGFDQAKELEGADAMAAYV-KGLQDLQMLKRQALIGSLYPHEQSVMESTE 457
            M A TRS  + LYR L +  +  TDYNYR Y+LRR+R  F + K +     +   V +  ++L+++KRQ +IG +Y H + ++ES E
Sbjct:    1 MAAATRSEVLSLYRLLLRAGRQFTDYNYRNYALRRARDAFHENKTVADKQKIQDLVNEAKKNLEIIKRQVIIGQMYGHGKLIIESQE 87          
BLAST of mRNA_P-wetherbeei_contig1826.3.1 vs. uniprot
Match: A0A165K9D5_EXIGL (Complex1_LYR_dom domain-containing protein n=1 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165K9D5_EXIGL)

HSP 1 Score: 61.2 bits (147), Expect = 4.670e-9
Identity = 34/97 (35.05%), Postives = 61/97 (62.89%), Query Frame = 2
Query:  200 MQAPTRSMAMGLYRSLRKTAKSMTDYNYREYSLRRSRLGFDQAKELEGADAMAA-YVKGLQDLQMLKRQALIGSLYPHEQSVMESTEYENSEPTEQG 487
            M +P+R+  + LY S+ + ++S T YN+R+Y +RR+R  F Q +    A+ + A Y  GL++L++L+R A++ SLY   + V+E ++ E     E+G
Sbjct:    1 MSSPSRTSILHLYGSMLRASRSFTSYNFRQYFIRRTRSTFRQLQNESDAERIKAFYDNGLRELEVLRRSAIVNSLYGGRRLVVERSDAEEKIELERG 97          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1826.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRV6_ECTSI1.310e-1747.62Complex1_LYR_dom domain-containing protein n=2 Tax... [more]
A0A0G4IIG7_PLABS7.290e-1339.51Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A7S1G6K1_9STRA9.100e-1251.43Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A0B6ZHZ5_9EUPU3.760e-1142.35Complex1_LYR_dom domain-containing protein (Fragme... [more]
A0A6H5I7Q7_9HYME5.890e-1147.50Complex1_LYR_dom domain-containing protein n=2 Tax... [more]
A0A0H5R7G6_9EUKA1.270e-1041.10Complex1_LYR_dom domain-containing protein (Fragme... [more]
UPI00035A1C095.080e-1041.18LYR motif-containing protein 4 n=1 Tax=Aplysia cal... [more]
A0A6P3DAG8_BOMTE7.490e-1039.08LYR motif-containing protein 4 n=5 Tax=Bombus TaxI... [more]
UPI001B88CBDA2.880e-939.08LYR motif-containing protein 4-like n=1 Tax=Gigant... [more]
A0A165K9D5_EXIGL4.670e-935.05Complex1_LYR_dom domain-containing protein n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1826contigP-wetherbeei_contig1826:5433..6162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FRV6
Preferred nameLYRM4
PFAMsComplex1_LYR
Model size582
Max annot lvl2759|Eukaryota
KEGG koko:K22069
Hectar predicted targeting categorymitochondrion
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005829,GO:0006790,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016043,GO:0016226,GO:0016604,GO:0019866,GO:0019898,GO:0022607,GO:0031090,GO:0031163,GO:0031312,GO:0031314,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044455,GO:0044464,GO:0044571,GO:0051186,GO:0070013,GO:0071840,GO:1990221
Exons2
Evalue7.76e-20
EggNOG OGsKOG3801@1|root,KOG3801@2759|Eukaryota
Ec32 ortholog descriptionComplex 1 LYR protein
Ec32 orthologEc-23_004100.1
Descriptionmetallo-sulfur cluster assembly
Cds size297
COG categoryG
BRITEko00000,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186141.2552586-UTR-P-wetherbeei_contig1826:5432..56311683186141.2552586-UTR-P-wetherbeei_contig1826:5432..5631Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1826 5433..5631 +
1683186141.2914793-UTR-P-wetherbeei_contig1826:6076..61621683186141.2914793-UTR-P-wetherbeei_contig1826:6076..6162Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1826 6077..6162 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186141.2724786-CDS-P-wetherbeei_contig1826:5631..57031683186141.2724786-CDS-P-wetherbeei_contig1826:5631..5703Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1826 5632..5703 +
1683186141.280884-CDS-P-wetherbeei_contig1826:5851..60761683186141.280884-CDS-P-wetherbeei_contig1826:5851..6076Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1826 5852..6076 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1826.3.1prot_P-wetherbeei_contig1826.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1826 5632..6076 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1826.3.1

>prot_P-wetherbeei_contig1826.3.1 ID=prot_P-wetherbeei_contig1826.3.1|Name=mRNA_P-wetherbeei_contig1826.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=99bp
MQAPTRSMAMGLYRSLRKTAKSMTDYNYREYSLRRSRLGFDQAKELEGAD
AMAAYVKGLQDLQMLKRQALIGSLYPHEQSVMESTEYENSEPTEQGRH*
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mRNA from alignment at P-wetherbeei_contig1826:5433..6162+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1826.3.1 ID=mRNA_P-wetherbeei_contig1826.3.1|Name=mRNA_P-wetherbeei_contig1826.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=730bp|location=Sequence derived from alignment at P-wetherbeei_contig1826:5433..6162+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCCTCGCCGGACCGCACCAATGTTGTACACCACTCGCAGCAACGCTCT CTTCATGCTTCCGCAAGGAAGGGCCGGTCGAGATCCGCGATGGTTCCGTA CCGAAACAAATCTCTTCAGGACCTTAGTCAATAGATACTGTACCTCCCGC GAGCGAGCAGGAGGCAAACAGGAGCCGCCACAACGATCCGAGCAACGATA TGCAGGCACCGACGCGGAGCATGGCCATGGGGCTCTACCGGAGCTTACGG AAAACAGCGAAGAGTATGACGGTGCGTGAGAGGGCCTGGTTCCTTCTTTA TGCACTCTCTTCCCTGTTGATTATCGCGGTCTCTTCTTCTTCTCTTGGTT GTGCTATGAAACACTTCTTCAAGCGAGATTTCCATCGCCCTTCCCTCTTC TCTCTTCACTCCTGGACAGGACTATAACTATCGTGAGTACTCGTTGCGAC GGTCGCGGCTCGGCTTCGACCAAGCAAAGGAACTGGAAGGCGCGGATGCC ATGGCGGCGTACGTCAAGGGCCTGCAGGATCTGCAGATGCTGAAGAGGCA AGCCCTCATCGGCAGCCTCTATCCGCACGAGCAGAGCGTCATGGAGTCGA CGGAGTACGAAAACAGCGAGCCAACAGAACAAGGGCGACATTAAGCAAAG GGATGGTGAGATGAGGATAAGGTTGCTATAAACATCGAACAGTTGTCCAT CACAAAATCACTCCAGAAATATAGCAGAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1826:5433..6162+

>mRNA_P-wetherbeei_contig1826.3.1 ID=mRNA_P-wetherbeei_contig1826.3.1|Name=mRNA_P-wetherbeei_contig1826.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig1826:5433..6162+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGCACCGACGCGGAGCATGGCCATGGGGCTCTACCGGAGCTTACG
GAAAACAGCGAAGAGTATGACGGACTATAACTATCGTGAGTACTCGTTGC
GACGGTCGCGGCTCGGCTTCGACCAAGCAAAGGAACTGGAAGGCGCGGAT
GCCATGGCGGCGTACGTCAAGGGCCTGCAGGATCTGCAGATGCTGAAGAG
GCAAGCCCTCATCGGCAGCCTCTATCCGCACGAGCAGAGCGTCATGGAGT
CGACGGAGTACGAAAACAGCGAGCCAACAGAACAAGGGCGACATTAA
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