mRNA_P-wetherbeei_contig18246.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18246.1.1
Unique NamemRNA_P-wetherbeei_contig18246.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18246.1.1 vs. uniprot
Match: D8LRT6_ECTSI (Pyridoxamine 5'-phosphate oxidase-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRT6_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 3.500e-65
Identity = 102/135 (75.56%), Postives = 114/135 (84.44%), Query Frame = 1
Query:    1 VYYVGGFGVLSKWLAVSEYESAKPDILAAEAARIVSKLNRDKQEDLVTLCRQFLGIKAVDKVAATTVDRLGMDIRVTSDKLTDEVRVGFRQPVGSVEDAKSEIVKVFQEAWEKEQGFEWEDQGPPTQRYAQDILR 405
            VYYVGGFGVLSKWL VSEYE+A+PDILA EA+ IVSK+N  KQEDL T+C+ FL     D VA TTVDRLG+D+RV +  LTDE R+GFRQPV SVEDAKSEIVK+FQEAWEKE GFEWEDQGPP QRYA+DILR
Sbjct:  162 VYYVGGFGVLSKWLPVSEYETAEPDILADEASSIVSKINNGKQEDLQTVCKHFLNKATPDTVAVTTVDRLGLDLRVKARDLTDEFRIGFRQPVSSVEDAKSEIVKIFQEAWEKENGFEWEDQGPPIQRYAEDILR 296          
BLAST of mRNA_P-wetherbeei_contig18246.1.1 vs. uniprot
Match: A0A836CD40_9STRA (Pyridoxamine 5'-phosphate oxidase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD40_9STRA)

HSP 1 Score: 204 bits (519), Expect = 2.220e-63
Identity = 100/136 (73.53%), Postives = 111/136 (81.62%), Query Frame = 1
Query:    1 VYYVGGFGVLSKWLAVSEYESAKPDILAAEAARIVSKLNRDKQEDLVTLCRQFLGIKAVDKVAATTVDRLGMDIRVTSDKLTDEVRVGFRQPVGSVEDAKSEIVKVFQEAWEKEQGFEWEDQGPPTQRYAQDILRR 408
            +YYVGG+GVLSKWL V EYE AKPDILA  AARI +K+N+ KQ DL  +C+QFL    VD V  TTVDRLG+DIRVT   LTDE R+GF Q V SVEDAKSEIVKVFQEAWEKEQGFEWEDQGPP QRYA+DILR+
Sbjct:  159 IYYVGGYGVLSKWLDVQEYELAKPDILADNAARIAAKINKAKQGDLALVCKQFLNKPRVDNVVLTTVDRLGLDIRVTDGALTDEYRIGFTQTVSSVEDAKSEIVKVFQEAWEKEQGFEWEDQGPPVQRYAEDILRK 294          
BLAST of mRNA_P-wetherbeei_contig18246.1.1 vs. uniprot
Match: A0A4D9D6I7_9STRA (DUF2470 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6I7_9STRA)

HSP 1 Score: 179 bits (455), Expect = 6.960e-53
Identity = 85/136 (62.50%), Postives = 111/136 (81.62%), Query Frame = 1
Query:    1 VYYVGGFGVLSKWLAVSEYESAKPDILAAEAARIVSKLNRDKQEDLVTLCRQFLGIKAVDKVAATTVDRLGMDIRVTSDKLTDEVRVGFRQPVGSVEDAKSEIVKVFQEAWEKEQGFEWEDQGPPTQRYAQDILRR 408
            VY+VGGFGV SKWL VS+YE+A PD+LA E ARIV+++N++ + +L  +CR FLG + VD+V ATTVDRLG+D+RVT+ +LTDE RVGFR+ V S EDAKSE+VK+FQEAWE+E  + W D+ PP  RYA+DILR+
Sbjct:  232 VYFVGGFGVQSKWLEVSDYEAAVPDVLAHEMARIVARINQEHEPELRLMCRHFLGARDVDQVTATTVDRLGIDLRVTTGELTDEYRVGFREKVVSTEDAKSELVKMFQEAWEREHDYAWTDELPPVIRYAEDILRK 367          
BLAST of mRNA_P-wetherbeei_contig18246.1.1 vs. uniprot
Match: A0A6V2T0J3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2T0J3_HETAK)

HSP 1 Score: 166 bits (420), Expect = 7.750e-48
Identity = 81/139 (58.27%), Postives = 107/139 (76.98%), Query Frame = 1
Query:    1 VYYVGGFGVLSKWLAVSEYESAKPDILAAEAARIVSKLNRDKQEDLVTLCRQFLGIKAVDKVAATTVDRLGMDIRVTSDKLTDEVRVGFR--QPVGSVEDAKSEIVKVFQEAWEKEQGFEW-EDQGPPTQRYAQDILRR 408
            +YY+GGFGV + W+ V+EYE+AKPDILA E+  +V++LN+   EDL TLC QFLG+K+  +   T +DRLG ++RV+S K TDE R+GF   Q V SVEDAKSEIVK+FQEAWEK++G EW +D  PP ++YA DILR+
Sbjct:  213 IYYIGGFGVNAAWVEVAEYEAAKPDILAYESPAVVARLNKKHAEDLATLCSQFLGVKSPQEATVTNLDRLGFNVRVSSGKETDEFRIGFNPLQQVFSVEDAKSEIVKLFQEAWEKKEGNEWAQDYQPPVEKYASDILRK 351          
BLAST of mRNA_P-wetherbeei_contig18246.1.1 vs. uniprot
Match: A0A482S023_9ARCH (DUF2470 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S023_9ARCH)

HSP 1 Score: 153 bits (387), Expect = 9.420e-44
Identity = 71/136 (52.21%), Postives = 101/136 (74.26%), Query Frame = 1
Query:    1 VYYVGGFGVLSKWLAVSEYESAKPDILAAEAARIVSKLNRDKQEDLVTLCRQFLGIKAVDKVAATTVDRLGMDIRVTSDKLTDEVRVGFRQPVGSVEDAKSEIVKVFQEAWEKEQGFEWEDQGPPTQRYAQDILRR 408
            +Y+ GGFGV + W+ V +YE+A+PD+LA E   ++S++N DKQ +L+ +CR FLG+  VD V    +D+LG+D+R+   +LTDE RVGFR PV S EDAKSE+ K+FQEAW++EQG  + D  PP  +YA+DILR+
Sbjct:  132 IYFSGGFGVQATWVNVPDYEAARPDVLAQEVPTVLSRVNLDKQAELLLMCRYFLGLDDVDLVRIQAIDQLGIDLRLKRGELTDEYRVGFRHPVRSGEDAKSELTKLFQEAWQREQGCFFADDLPPITKYAEDILRQ 267          
BLAST of mRNA_P-wetherbeei_contig18246.1.1 vs. uniprot
Match: A0A7S1GRF9_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GRF9_CYCTE)

HSP 1 Score: 147 bits (372), Expect = 3.520e-41
Identity = 81/148 (54.73%), Postives = 102/148 (68.92%), Query Frame = 1
Query:    1 VYYVGGFGVLSKWLAVSEYESAKPDILAAEAARIVSKLNRDKQEDLVTLCRQFLGIKA-VDKVAATTVDRLGMDIRVTSDK-------LTDEVRVGFRQPVGSVEDAKSEIVKVFQEAWEKEQGFEWE--DQGP----PTQRYAQDIL 402
            +Y+VGGFGVL+KW+ V EY+SA PDILA EA+ IV +LNRD +EDL       L ++  ++KV  T VDRLG+DIRVTS K       LTDE R+GFR PV SVEDAKSE++K+FQEAWEK  G+ W+  D+ P    P  + A D L
Sbjct:  153 IYFVGGFGVLAKWVDVEEYQSAAPDILAMEASEIVGRLNRDHKEDLRLTATHLLNVETEIEKVQVTNVDRLGVDIRVTSQKGARRNKLLTDEFRIGFRIPVLSVEDAKSEVLKIFQEAWEKGNGYTWDADDELPGSTVPVMKIAADDL 300          
BLAST of mRNA_P-wetherbeei_contig18246.1.1 vs. uniprot
Match: A0A6S8YP63_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8YP63_9STRA)

HSP 1 Score: 149 bits (376), Expect = 4.550e-41
Identity = 81/147 (55.10%), Postives = 103/147 (70.07%), Query Frame = 1
Query:    1 VYYVGGFGVLSKWLAVSEYESAKPDILAAEAARIVSKLNRDKQEDLVTLCRQFLGIKAVDKVAATTVDRLGMDIRVTSDK-------LTDEVRVGFRQPVGSVEDAKSEIVKVFQEAWEKEQGFEW--EDQGP----PTQRYAQDIL 402
            +YYVGGFGVLSKW+ V++Y+ A PDILA +A+ I+SKLN + +EDL       L +K V+K+  T VDRLGMDIRVTS +       +TDE RVGFR PV SVEDAKSE++KVFQEAWEK +G  W  E++ P    P  + A+D L
Sbjct:  226 IYYVGGFGVLSKWVDVNDYQKAVPDILANDASSIISKLNNEHEEDLFLTATHLLDVKDVEKIRVTGVDRLGMDIRVTSFQGARRNKMITDEFRVGFRIPVISVEDAKSEVLKVFQEAWEKGKGLTWGEEEEVPGSTVPIMKIAEDSL 372          
BLAST of mRNA_P-wetherbeei_contig18246.1.1 vs. uniprot
Match: A0A7S0FJ14_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FJ14_9STRA)

HSP 1 Score: 143 bits (361), Expect = 1.080e-40
Identity = 74/131 (56.49%), Postives = 95/131 (72.52%), Query Frame = 1
Query:    1 VYYVGGFGVLSKWLAVSEYESAKPDILAAEAARIVSKLNRDKQEDLVTLCRQFLGIKAVDKVAATTVDRLGMDIRVT-----SDKL-TDEVRVGFRQPVGSVEDAKSEIVKVFQEAWEKEQGFEWEDQGPP 375
            V++VGGFGVL+KW+ V EY+ A PDILA +A+ I+S+LNRD  EDL       L  + V+++  T VDRLG+DIRVT     ++KL TDE R+GFR PV SVEDAKSEI+K+FQEAWEK  G++W D   P
Sbjct:   55 VHFVGGFGVLAKWVPVDEYKEATPDILAKDASDIISRLNRDHSEDLALTAEHLLDSQDVERIRVTAVDRLGIDIRVTKKGPRANKLVTDEFRIGFRIPVISVEDAKSEILKIFQEAWEKANGYDWGDNEEP 185          
BLAST of mRNA_P-wetherbeei_contig18246.1.1 vs. uniprot
Match: A0A7S3M5B1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M5B1_9STRA)

HSP 1 Score: 147 bits (372), Expect = 1.640e-40
Identity = 71/137 (51.82%), Postives = 102/137 (74.45%), Query Frame = 1
Query:    1 VYYVGGFGVLSKWLAVSEYESAKPDILAAEAARIVSKLNRDKQEDLVTLCRQFLGIKAVDKVAATTVDRLGMDIRVTSD-KLTDEVRVGFRQPVGSVEDAKSEIVKVFQEAWEKEQGFEWEDQGPPTQRYAQDILRR 408
            +++ GGFGV + W+ V EYESA+ D+LA E   +++K+N +KQ +L+ LC+ FLG++ V+ V   T+DRLGMD+R+ S   LTDE RVGFR  V S E+AKSE+VK+FQEAWE+EQG  + D+ P   +YA+DI+R+
Sbjct:  222 IFFSGGFGVSATWVDVKEYESARADVLANEMPIVLAKVNLEKQGELLLLCKHFLGLQDVEVVRVQTIDRLGMDLRIKSGGDLTDEYRVGFRHAVNSAEEAKSEMVKLFQEAWEREQGCYYSDELPLVTKYAEDIIRK 358          
BLAST of mRNA_P-wetherbeei_contig18246.1.1 vs. uniprot
Match: B8BXF8_THAPS (DUF2470 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXF8_THAPS)

HSP 1 Score: 146 bits (369), Expect = 3.190e-40
Identity = 77/132 (58.33%), Postives = 92/132 (69.70%), Query Frame = 1
Query:    1 VYYVGGFGVLSKWLAVSEYESAKPDILAAEAARIVSKLNRDKQEDLVTLCRQFLGIKAVDKVAATTVDRLGMDIRVT-------SDKLTDEVRVGFRQPVGSVEDAKSEIVKVFQEAWEKEQGFEWEDQGPP 375
            +YYVGGFGV S+W+   EY  A PDILA +A+ I+++LNRD  EDL+    Q L +K VDKV  T VDRLGMD+RVT       S  +TDE RVGFR PV SVEDAKSE++KVFQEAWEK+ G  W D   P
Sbjct:  206 IYYVGGFGVSSEWVPPEEYSEATPDILAKDASGIMTRLNRDHAEDLMLTATQILEVKEVDKVRVTGVDRLGMDMRVTCRDPRRKSKLITDEFRVGFRIPVISVEDAKSEVLKVFQEAWEKKNGVTWGDDAVP 337          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18246.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRT6_ECTSI3.500e-6575.56Pyridoxamine 5'-phosphate oxidase-related n=1 Tax=... [more]
A0A836CD40_9STRA2.220e-6373.53Pyridoxamine 5'-phosphate oxidase-like protein n=1... [more]
A0A4D9D6I7_9STRA6.960e-5362.50DUF2470 domain-containing protein n=2 Tax=Monodops... [more]
A0A6V2T0J3_HETAK7.750e-4858.27Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A482S023_9ARCH9.420e-4452.21DUF2470 domain-containing protein n=1 Tax=archaeon... [more]
A0A7S1GRF9_CYCTE3.520e-4154.73Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A6S8YP63_9STRA4.550e-4155.10Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A7S0FJ14_9STRA1.080e-4056.49Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S3M5B1_9STRA1.640e-4051.82Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
B8BXF8_THAPS3.190e-4058.33DUF2470 domain-containing protein n=1 Tax=Thalassi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18246contigP-wetherbeei_contig18246:126..1082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LRT6
PFAMsDUF2470,Pyrid_oxidase_2
Model size411
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.74e-66
EggNOG OGsCOG0748@1|root,2RYPS@2759|Eukaryota
DescriptionPyridoxamine 5'-phosphate oxidase
Cds size411
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186140.679063-CDS-P-wetherbeei_contig18246:125..3081683186140.679063-CDS-P-wetherbeei_contig18246:125..308Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18246 126..308 +
1683186140.6886384-CDS-P-wetherbeei_contig18246:643..7171683186140.6886384-CDS-P-wetherbeei_contig18246:643..717Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18246 644..717 +
1683186140.6982796-CDS-P-wetherbeei_contig18246:928..10821683186140.6982796-CDS-P-wetherbeei_contig18246:928..1082Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18246 929..1082 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18246.1.1prot_P-wetherbeei_contig18246.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18246 126..1082 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18246.1.1

>prot_P-wetherbeei_contig18246.1.1 ID=prot_P-wetherbeei_contig18246.1.1|Name=mRNA_P-wetherbeei_contig18246.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
VYYVGGFGVLSKWLAVSEYESAKPDILAAEAARIVSKLNRDKQEDLVTLC
RQFLGIKAVDKVAATTVDRLGMDIRVTSDKLTDEVRVGFRQPVGSVEDAK
SEIVKVFQEAWEKEQGFEWEDQGPPTQRYAQDILRR*
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mRNA from alignment at P-wetherbeei_contig18246:126..1082+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18246.1.1 ID=mRNA_P-wetherbeei_contig18246.1.1|Name=mRNA_P-wetherbeei_contig18246.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=957bp|location=Sequence derived from alignment at P-wetherbeei_contig18246:126..1082+ (Phaeothamnion wetherbeei SAG_119_79)
GTGTACTACGTGGGAGGATTCGGTGTGCTGAGCAAGTGGCTGGCGGTGTC GGAGTACGAGTCGGCCAAGCCCGACATCCTGGCGGCCGAGGCGGCGCGCA TCGTCTCCAAACTCAACCGCGACAAGCAGGAGGACCTCGTCACCCTGTGC AGGCAGTTCCTTGGCATCAAGGCCGTTGACAAGGTAAAACCAGGCGGTCA GCCAGGCAGCCAGGCGGCTGCGGTCAGGCGGTGCGGTCGGTCGGGCACTC TGGTGGGGCGGTTGATGGAAGGCTTCAGTTTTCCTCCTATATCTTCTCGT TTGCGATACGTTTCAGCCGGGGAGGGATGGAAGTGTAAGATGATGCATAA AGCGTTATGGCAATCTCTGAAACAAACGGCCTGCATGGTATTCGGGTGGT GGCGGTTCAGGCAAGCATTCACAGGGAATCGAGTAGATTTGCGTACCTGA TTCTGATTTGTTTCCGTTGTAAATTAATACTTGGCTTTGCTTCTCTTCAC TCAATTGCAACGCGATAGGTTGCGGCAACTACCGTGGACCGGCTTGGGAT GGACATCCGCGTCACGTCCGACAAGCTTACGGACGAAGTCAGGTTTGTTC AATGGATGTATCCGTATACGAATTGCAATTAATGATCGCTGGAAGTCCAG GCGTCTACTCGGAACGATAATGGATTTAGAAGCATCAGCGAAGTTCGCCT CCCTGCTCTTATCTCTCTTCCGTGCCTGACATCGGACCCGCACGGCGCTG GCATGGCTTGACTCCCAGCGGCTTCTTTGACTTGTGTGTGCGTTGTGTCG CAGGGTGGGGTTCAGGCAGCCGGTGGGCAGCGTGGAGGACGCCAAGAGCG AGATTGTCAAGGTGTTTCAGGAGGCGTGGGAGAAGGAGCAGGGCTTCGAG TGGGAGGACCAGGGCCCACCCACGCAGCGCTACGCCCAGGACATCCTCCG CCGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18246:126..1082+

>mRNA_P-wetherbeei_contig18246.1.1 ID=mRNA_P-wetherbeei_contig18246.1.1|Name=mRNA_P-wetherbeei_contig18246.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig18246:126..1082+ (Phaeothamnion wetherbeei SAG_119_79)
GTGTACTACGTGGGAGGATTCGGTGTGCTGAGCAAGTGGCTGGCGGTGTC
GGAGTACGAGTCGGCCAAGCCCGACATCCTGGCGGCCGAGGCGGCGCGCA
TCGTCTCCAAACTCAACCGCGACAAGCAGGAGGACCTCGTCACCCTGTGC
AGGCAGTTCCTTGGCATCAAGGCCGTTGACAAGGTTGCGGCAACTACCGT
GGACCGGCTTGGGATGGACATCCGCGTCACGTCCGACAAGCTTACGGACG
AAGTCAGGGTGGGGTTCAGGCAGCCGGTGGGCAGCGTGGAGGACGCCAAG
AGCGAGATTGTCAAGGTGTTTCAGGAGGCGTGGGAGAAGGAGCAGGGCTT
CGAGTGGGAGGACCAGGGCCCACCCACGCAGCGCTACGCCCAGGACATCC
TCCGCCGCTGA
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