mRNA_P-wetherbeei_contig18218.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18218.2.1
Unique NamemRNA_P-wetherbeei_contig18218.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig18218.2.1 vs. uniprot
Match: A0A352KGS8_9PROT (2Fe-2S ferredoxin n=4 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A352KGS8_9PROT)

HSP 1 Score: 175 bits (444), Expect = 5.430e-55
Identity = 84/106 (79.25%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:   16 MPKITYIEFSGAEHVVDVAEGLSVMEGAVQNLVPGIDGDCGGACACATCHVYVDAAWASKTGTKEQMEQSMLDFASAVKENSRLSCQIKVSKELDGLVVRMPEHQY 333
            M KITYIEF+G EHV+DV  GLSVMEGA QN+VPGIDGDCGGACACATCHVYVD AW  KTG + QME+SMLDF S V E+SRL CQIKVS ELDGLVVR+PEHQY
Sbjct:    1 MAKITYIEFNGTEHVIDVENGLSVMEGATQNMVPGIDGDCGGACACATCHVYVDDAWTDKTGERSQMEESMLDFTSDVNESSRLCCQIKVSDELDGLVVRLPEHQY 106
[Close]
BLAST of mRNA_P-wetherbeei_contig18218.2.1 vs. uniprot
Match: A0A2D7Y1M9_9PROT (2Fe-2S ferredoxin n=3 Tax=Maricaulis TaxID=74317 RepID=A0A2D7Y1M9_9PROT)

HSP 1 Score: 174 bits (441), Expect = 1.560e-54
Identity = 84/105 (80.00%), Postives = 92/105 (87.62%), Query Frame = 1 
Query:   16 MPKITYIEFSGAEHVVDVAEGLSVMEGAVQNLVPGIDGDCGGACACATCHVYVDAAWASKTGTKEQMEQSMLDFASAVKENSRLSCQIKVSKELDGLVVRMPEHQ 330
            MPKITYIEF+G EH +DV  GLSVMEGAV+NLVPGID DCGGACACATCHVYVD AW  KTG++E ME SMLDFA  V++NSRLSCQIKV+ ELDGLVVRMPEHQ
Sbjct:    1 MPKITYIEFNGNEHEIDVPNGLSVMEGAVRNLVPGIDADCGGACACATCHVYVDPAWTDKTGSREAMEDSMLDFAEHVQDNSRLSCQIKVTDELDGLVVRMPEHQ 105
[Close]
BLAST of mRNA_P-wetherbeei_contig18218.2.1 vs. uniprot
Match: Q0ATL0_MARMM (Ferredoxin n=3 Tax=Maricaulis TaxID=74317 RepID=Q0ATL0_MARMM)

HSP 1 Score: 173 bits (438), Expect = 4.460e-54
Identity = 84/105 (80.00%), Postives = 93/105 (88.57%), Query Frame = 1 
Query:   16 MPKITYIEFSGAEHVVDVAEGLSVMEGAVQNLVPGIDGDCGGACACATCHVYVDAAWASKTGTKEQMEQSMLDFASAVKENSRLSCQIKVSKELDGLVVRMPEHQ 330
            MPKITYIE +G EHV+DVA GL+VMEGAV+NLVPGID DCGGACACATCHVYVD AWA KTG++E ME SMLDFA  V+E SRLSCQIKVS ELDGLVVRMP++Q
Sbjct:    1 MPKITYIEHNGTEHVIDVATGLTVMEGAVRNLVPGIDADCGGACACATCHVYVDPAWADKTGSREAMEDSMLDFAEEVQETSRLSCQIKVSDELDGLVVRMPQNQ 105
[Close]
BLAST of mRNA_P-wetherbeei_contig18218.2.1 vs. uniprot
Match: A0A2D5FTW4_9PROT (2Fe-2S ferredoxin n=2 Tax=Maricaulaceae TaxID=2800061 RepID=A0A2D5FTW4_9PROT)

HSP 1 Score: 168 bits (426), Expect = 3.010e-52
Identity = 81/105 (77.14%), Postives = 90/105 (85.71%), Query Frame = 1 
Query:   16 MPKITYIEFSGAEHVVDVAEGLSVMEGAVQNLVPGIDGDCGGACACATCHVYVDAAWASKTGTKEQMEQSMLDFASAVKENSRLSCQIKVSKELDGLVVRMPEHQ 330
            MPKITYIE +G EH +DV  GLSVMEGAV+NLVPGID DCGGACACATCHVYVD AWA KTG++E ME+SMLDFA  V+E SRLSCQI V+  LDGL+VRMPEHQ
Sbjct:    1 MPKITYIEHNGTEHEIDVPNGLSVMEGAVRNLVPGIDADCGGACACATCHVYVDPAWADKTGSREPMEESMLDFAEDVQETSRLSCQITVTDALDGLIVRMPEHQ 105
[Close]
BLAST of mRNA_P-wetherbeei_contig18218.2.1 vs. uniprot
Match: A0A838UHR5_9CAUL (2Fe-2S iron-sulfur cluster binding domain-containing protein n=1 Tax=Caulobacteraceae bacterium TaxID=1978230 RepID=A0A838UHR5_9CAUL)

HSP 1 Score: 166 bits (421), Expect = 1.740e-51
Identity = 82/106 (77.36%), Postives = 90/106 (84.91%), Query Frame = 1 
Query:   16 MPKITYIEFSGAEHVVDVAEGLSVMEGAVQNLVPGIDGDCGGACACATCHVYVDAAWASKTGTKEQMEQSMLDFASAVKENSRLSCQIKVSKELDGLVVRMPEHQY 333
            M KITYIE +GAEHV+DV  GLSVMEGAV+N VPGID DCGGACACATCHVYVD AW  KTGT   ME+SMLDFA  V+ NSRLSCQIKVS+E+DGLVVRMPE Q+
Sbjct:    1 MAKITYIEHTGAEHVIDVKSGLSVMEGAVKNNVPGIDADCGGACACATCHVYVDEAWRDKTGTPSAMEESMLDFAENVETNSRLSCQIKVSEEIDGLVVRMPESQH 106
[Close]
BLAST of mRNA_P-wetherbeei_contig18218.2.1 vs. uniprot
Match: UPI001575C79C (2Fe-2S iron-sulfur cluster-binding protein n=1 Tax=Caulobacter sp. S45 TaxID=1641861 RepID=UPI001575C79C)

HSP 1 Score: 164 bits (416), Expect = 1.010e-50
Identity = 80/106 (75.47%), Postives = 90/106 (84.91%), Query Frame = 1 
Query:   16 MPKITYIEFSGAEHVVDVAEGLSVMEGAVQNLVPGIDGDCGGACACATCHVYVDAAWASKTGTKEQMEQSMLDFASAVKENSRLSCQIKVSKELDGLVVRMPEHQY 333
            M KITY+EF+G EHVVDV  GL+VMEGAV+N VPGID DCGGACACATCHVYVD AW  KTGT   ME+SMLDFA AV+ NSRLSCQIKV++EL GL+VRMPE Q+
Sbjct:    1 MAKITYVEFNGTEHVVDVKPGLTVMEGAVKNNVPGIDADCGGACACATCHVYVDPAWTEKTGTPSPMEESMLDFAEAVEPNSRLSCQIKVTEELGGLLVRMPESQH 106
[Close]
BLAST of mRNA_P-wetherbeei_contig18218.2.1 vs. uniprot
Match: A0A7G8ZMX4_9PROT (2Fe-2S iron-sulfur cluster binding domain-containing protein n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A7G8ZMX4_9PROT)

HSP 1 Score: 164 bits (415), Expect = 1.430e-50
Identity = 78/105 (74.29%), Postives = 91/105 (86.67%), Query Frame = 1 
Query:   16 MPKITYIEFSGAEHVVDVAEGLSVMEGAVQNLVPGIDGDCGGACACATCHVYVDAAWASKTGTKEQMEQSMLDFASAVKENSRLSCQIKVSKELDGLVVRMPEHQ 330
            M KITYIE  G +H +DVA+GL+VMEGA++N+VPGID DCGGACACATCHVYVD AW SKTG K  +E+SMLDFA+ V+ NSRLSCQIKVS ELDGL+VRMPE+Q
Sbjct:    1 MAKITYIEHDGTKHEIDVADGLTVMEGAIRNMVPGIDADCGGACACATCHVYVDEAWVSKTGEKSGVEESMLDFATDVEANSRLSCQIKVSPELDGLIVRMPEYQ 105
[Close]
BLAST of mRNA_P-wetherbeei_contig18218.2.1 vs. uniprot
Match: UPI00131BC8C8 ((2Fe-2S)-binding protein n=1 Tax=Caulobacter sp. S45 TaxID=1641861 RepID=UPI00131BC8C8)

HSP 1 Score: 163 bits (413), Expect = 2.890e-50
Identity = 79/106 (74.53%), Postives = 90/106 (84.91%), Query Frame = 1 
Query:   16 MPKITYIEFSGAEHVVDVAEGLSVMEGAVQNLVPGIDGDCGGACACATCHVYVDAAWASKTGTKEQMEQSMLDFASAVKENSRLSCQIKVSKELDGLVVRMPEHQY 333
            M KITYIEF+GAEH ++V  GL+VMEGAV+N VPGID DCGGACACATCHVYVDAAWA K G    ME+SMLDFA AV+ NSRLSCQIKV+  LDGL+VRMPE+Q+
Sbjct:    1 MAKITYIEFAGAEHAIEVKPGLTVMEGAVKNNVPGIDADCGGACACATCHVYVDAAWADKVGKPSAMEESMLDFAEAVEPNSRLSCQIKVTDALDGLIVRMPENQH 106
[Close]
BLAST of mRNA_P-wetherbeei_contig18218.2.1 vs. uniprot
Match: A0A2U2BWW3_9PROT (2Fe-2S ferredoxin n=1 Tax=Marinicauda salina TaxID=2135793 RepID=A0A2U2BWW3_9PROT)

HSP 1 Score: 163 bits (412), Expect = 4.100e-50
Identity = 79/105 (75.24%), Postives = 88/105 (83.81%), Query Frame = 1 
Query:   16 MPKITYIEFSGAEHVVDVAEGLSVMEGAVQNLVPGIDGDCGGACACATCHVYVDAAWASKTGTKEQMEQSMLDFASAVKENSRLSCQIKVSKELDGLVVRMPEHQ 330
            M KI YIEF GAEHVVDV  G++VMEGAV+N++PGID DCGGACACATCHVYVD  W  KTG +  ME+SMLDFAS V+E SRLSCQIKVS ELDGL+VRMPE Q
Sbjct:    1 MAKIKYIEFDGAEHVVDVEAGVTVMEGAVRNMIPGIDADCGGACACATCHVYVDPDWFEKTGERSAMEESMLDFASDVRETSRLSCQIKVSDELDGLIVRMPEEQ 105
[Close]
BLAST of mRNA_P-wetherbeei_contig18218.2.1 vs. uniprot
Match: A0A1G9STE8_9PROT (Ferredoxin, 2Fe-2S n=1 Tax=Maricaulis salignorans TaxID=144026 RepID=A0A1G9STE8_9PROT)

HSP 1 Score: 162 bits (411), Expect = 5.820e-50
Identity = 77/105 (73.33%), Postives = 90/105 (85.71%), Query Frame = 1 
Query:   16 MPKITYIEFSGAEHVVDVAEGLSVMEGAVQNLVPGIDGDCGGACACATCHVYVDAAWASKTGTKEQMEQSMLDFASAVKENSRLSCQIKVSKELDGLVVRMPEHQ 330
            M KITYIE +G EH ++VA GL+VMEGAV+N+VPGID DCGGACACATCHV+VD AW  KTG++E ME SMLDFA  V E SRLSCQIKV++ELDGL+VRMP+HQ
Sbjct:    1 MAKITYIEHNGTEHSIEVATGLTVMEGAVRNMVPGIDADCGGACACATCHVFVDQAWFDKTGSREAMEDSMLDFADGVTETSRLSCQIKVTEELDGLIVRMPKHQ 105
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18218.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A352KGS8_9PROT5.430e-5579.252Fe-2S ferredoxin n=4 Tax=Alphaproteobacteria bact... [more]
A0A2D7Y1M9_9PROT1.560e-5480.002Fe-2S ferredoxin n=3 Tax=Maricaulis TaxID=74317 R... [more]
Q0ATL0_MARMM4.460e-5480.00Ferredoxin n=3 Tax=Maricaulis TaxID=74317 RepID=Q0... [more]
A0A2D5FTW4_9PROT3.010e-5277.142Fe-2S ferredoxin n=2 Tax=Maricaulaceae TaxID=2800... [more]
A0A838UHR5_9CAUL1.740e-5177.362Fe-2S iron-sulfur cluster binding domain-containi... [more]
UPI001575C79C1.010e-5075.472Fe-2S iron-sulfur cluster-binding protein n=1 Tax... [more]
A0A7G8ZMX4_9PROT1.430e-5074.292Fe-2S iron-sulfur cluster binding domain-containi... [more]
UPI00131BC8C82.890e-5074.53(2Fe-2S)-binding protein n=1 Tax=Caulobacter sp. S... [more]
A0A2U2BWW3_9PROT4.100e-5075.242Fe-2S ferredoxin n=1 Tax=Marinicauda salina TaxID... [more]
A0A1G9STE8_9PROT5.820e-5073.33Ferredoxin, 2Fe-2S n=1 Tax=Maricaulis salignorans ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18218contigP-wetherbeei_contig18218:579..914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog394221.Mmar10_0081
Preferred namefdx
PFAMsFer2
Model size336
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K04755
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.97e-55
EggNOG OGsCOG0633@1|root,COG0633@2|Bacteria,1RHDC@1224|Proteobacteria,2U97J@28211|Alphaproteobacteria,43XZ5@69657|Hyphomonadaceae
DescriptionFerredoxin
Cds size321
COG categoryC
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186139.7131808-UTR-P-wetherbeei_contig18218:578..5931683186139.7131808-UTR-P-wetherbeei_contig18218:578..593Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18218 579..593 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186139.7247703-CDS-P-wetherbeei_contig18218:593..9141683186139.7247703-CDS-P-wetherbeei_contig18218:593..914Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18218 594..914 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18218.2.1prot_P-wetherbeei_contig18218.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18218 594..914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18218.2.1

>prot_P-wetherbeei_contig18218.2.1 ID=prot_P-wetherbeei_contig18218.2.1|Name=mRNA_P-wetherbeei_contig18218.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=107bp
MPKITYIEFSGAEHVVDVAEGLSVMEGAVQNLVPGIDGDCGGACACATCH
VYVDAAWASKTGTKEQMEQSMLDFASAVKENSRLSCQIKVSKELDGLVVR
MPEHQY*
back to top

mRNA from alignment at P-wetherbeei_contig18218:579..914+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18218.2.1 ID=mRNA_P-wetherbeei_contig18218.2.1|Name=mRNA_P-wetherbeei_contig18218.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig18218:579..914+ (Phaeothamnion wetherbeei SAG_119_79)
AAAAGTGACAGGAAAATGCCAAAAATTACCTATATCGAATTTAGCGGCGC
CGAACATGTGGTTGACGTGGCCGAGGGGCTTTCGGTCATGGAGGGCGCGG
TGCAGAACCTGGTCCCTGGAATCGATGGCGATTGCGGCGGCGCCTGCGCC
TGCGCCACCTGCCATGTTTATGTCGATGCCGCCTGGGCGTCCAAGACTGG
CACCAAGGAACAGATGGAGCAAAGCATGCTGGACTTCGCCTCGGCGGTAA
AAGAAAACAGCCGCCTGAGCTGCCAGATCAAGGTGTCGAAGGAACTGGAT
GGTTTGGTCGTGCGGATGCCGGAACATCAGTATTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig18218:579..914+

>mRNA_P-wetherbeei_contig18218.2.1 ID=mRNA_P-wetherbeei_contig18218.2.1|Name=mRNA_P-wetherbeei_contig18218.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig18218:579..914+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCAAAAATTACCTATATCGAATTTAGCGGCGCCGAACATGTGGTTGA
CGTGGCCGAGGGGCTTTCGGTCATGGAGGGCGCGGTGCAGAACCTGGTCC
CTGGAATCGATGGCGATTGCGGCGGCGCCTGCGCCTGCGCCACCTGCCAT
GTTTATGTCGATGCCGCCTGGGCGTCCAAGACTGGCACCAAGGAACAGAT
GGAGCAAAGCATGCTGGACTTCGCCTCGGCGGTAAAAGAAAACAGCCGCC
TGAGCTGCCAGATCAAGGTGTCGAAGGAACTGGATGGTTTGGTCGTGCGG
ATGCCGGAACATCAGTATTAG
back to top