mRNA_P-wetherbeei_contig182.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig182.5.1
Unique NamemRNA_P-wetherbeei_contig182.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig182.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig182contigP-wetherbeei_contig182:7704..8566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size527
Hectar predicted targeting categoryother localisation
Exons3
Cds size474
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186138.8490243-CDS-P-wetherbeei_contig182:7703..78141683186138.8490243-CDS-P-wetherbeei_contig182:7703..7814Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig182 7704..7814 -
1683186138.8670743-CDS-P-wetherbeei_contig182:8025..81271683186138.8670743-CDS-P-wetherbeei_contig182:8025..8127Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig182 8026..8127 -
1683186138.876782-CDS-P-wetherbeei_contig182:8252..85131683186138.876782-CDS-P-wetherbeei_contig182:8252..8513Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig182 8253..8513 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186138.8914125-UTR-P-wetherbeei_contig182:8513..85661683186138.8914125-UTR-P-wetherbeei_contig182:8513..8566Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig182 8514..8566 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig182.5.1prot_P-wetherbeei_contig182.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig182 7704..8513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig182.5.1

>prot_P-wetherbeei_contig182.5.1 ID=prot_P-wetherbeei_contig182.5.1|Name=mRNA_P-wetherbeei_contig182.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=158bp
MSTRRRRNLSDASSEEEEDDDDEDEDEEESSDLSEGEQEEGEGKQEAEPK
QEEKAAGADGDGKKVPQKTEAPLFKPAKREGKRESAEAARAAAAIDDSTA
ADAGAEAKKETKEERRARIRAEKQARIQAKKDPTYVPKEGGYFLHDDRAP
TDDENGIG
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mRNA from alignment at P-wetherbeei_contig182:7704..8566-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig182.5.1 ID=mRNA_P-wetherbeei_contig182.5.1|Name=mRNA_P-wetherbeei_contig182.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=863bp|location=Sequence derived from alignment at P-wetherbeei_contig182:7704..8566- (Phaeothamnion wetherbeei SAG_119_79)
GGGGGAAGTGATACCTGAATAAGAAAAGGGGGGAATCCTTCCTCACTGCA
GTCATGTCAACCAGACGGCGACGCAACCTCTCCGACGCATCTTCTGAGGA
AGAGGAAGACGACGACGACGAGGACGAGGACGAGGAGGAATCCAGCGACC
TGAGTGAAGGAGAGCAGGAAGAGGGCGAGGGAAAGCAAGAGGCCGAACCG
AAGCAGGAGGAGAAGGCAGCCGGTGCAGACGGAGATGGTAAGAAGGTGCC
GCAGAAGACGGAAGCGCCACTTTTCAAGCCTGCAAAGAGGGAAGGCAAAC
GGGAGAGCGCAGAGGTATGTGGCGGCAACAACGAAAAAATCTGTTCAAAT
TCTGATCTTTCTCTGCCTTGGCAATCCGCAGGGCCAATTACCGCTATTTC
ATTTCTCTCTCGTTTCTTTTCGTCTCGAGGTTTTTGCAGGCTGCTCGCGC
CGCTGCCGCCATCGATGACTCGACGGCTGCCGATGCCGGCGCGGAAGCGA
AGAAAGAGACCAAGGAAGAGCGACGTGCACGGATTCGCGCGGTGGGTCGG
AGGCCCGCGGTTCGCATCGCAACACGGCCTCCGTCCTCAAGGAGGGTTTG
CGTGGCAGCACAAGAGGAAGGGTGTTCCTTTTCAGCACCAAAGAAATGGA
ATACACTTTCGCTTCGCATCCTCCTGATTCTTCGTATAGTCTCACGCAGC
TCCCTTCGTCGCTCGGCACACCGGCTGGGCCTCCCGCTTTCGACTCTCGC
AGGAGAAACAGGCACGCATCCAGGCAAAAAAGGACCCGACTTACGTGCCG
AAGGAAGGCGGCTACTTTCTGCACGACGACCGCGCCCCGACGGACGACGA
AAACGGCATTGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig182:7704..8566-

>mRNA_P-wetherbeei_contig182.5.1 ID=mRNA_P-wetherbeei_contig182.5.1|Name=mRNA_P-wetherbeei_contig182.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig182:7704..8566- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCAACCAGACGGCGACGCAACCTCTCCGACGCATCTTCTGAGGAAGA
GGAAGACGACGACGACGAGGACGAGGACGAGGAGGAATCCAGCGACCTGA
GTGAAGGAGAGCAGGAAGAGGGCGAGGGAAAGCAAGAGGCCGAACCGAAG
CAGGAGGAGAAGGCAGCCGGTGCAGACGGAGATGGTAAGAAGGTGCCGCA
GAAGACGGAAGCGCCACTTTTCAAGCCTGCAAAGAGGGAAGGCAAACGGG
AGAGCGCAGAGGCTGCTCGCGCCGCTGCCGCCATCGATGACTCGACGGCT
GCCGATGCCGGCGCGGAAGCGAAGAAAGAGACCAAGGAAGAGCGACGTGC
ACGGATTCGCGCGGAGAAACAGGCACGCATCCAGGCAAAAAAGGACCCGA
CTTACGTGCCGAAGGAAGGCGGCTACTTTCTGCACGACGACCGCGCCCCG
ACGGACGACGAAAACGGCATTGGC
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