mRNA_P-wetherbeei_contig18150.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18150.1.1
Unique NamemRNA_P-wetherbeei_contig18150.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18150.1.1 vs. uniprot
Match: A0A7W5TGP2_9HYPH (2'-5' RNA ligase n=4 Tax=Rhizobium TaxID=379 RepID=A0A7W5TGP2_9HYPH)

HSP 1 Score: 80.9 bits (198), Expect = 2.640e-16
Identity = 48/103 (46.60%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  100 PHMTMAQIEVDALDRAAGALAEVASGMHGTRLAFDSIGLFPGEQPVLFLNPVASAGLLALHRRVHDALRKADATLAAGPGHYLPGNWVPHVTLGR---LRDAG 399
            PH+++A  +    +    AL + + GM    +   S+GLFPG  PVLF  PV SA LLALHR  H A+   D+  AA   +YLPGNWVPHVTLG    L +AG
Sbjct:   41 PHISLAVYDGLDPEPLIKALDQFSDGMRSPVVRLSSLGLFPGSAPVLFAAPVVSAELLALHRDFHTAI---DSAGAACWSYYLPGNWVPHVTLGEQLTLEEAG 140          
BLAST of mRNA_P-wetherbeei_contig18150.1.1 vs. uniprot
Match: A0A6G2JP02_9BACT (2'-5' RNA ligase family protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6G2JP02_9BACT)

HSP 1 Score: 79.0 bits (193), Expect = 1.430e-15
Identity = 50/132 (37.88%), Postives = 70/132 (53.03%), Query Frame = 1
Query:    1 AIVMTFDTASDTRIRRLWKAFEDRALIMPNVG----RPHMTMAQIEVDALDRAA--GALAEVASGMHGTRLAFDSIGLFPGEQPVLFLNPVASAGLLALHRRVHDALRKADATLAAGPGHYLPGNWVPHVTL 378
            AI + +D ASD  +R +W      AL  P++     RPH+++A +  D  D       L E A  +        S+G FPG++ V+FL PV +  LLA+H R H+   K D     G G+YLPGNWVPH T+
Sbjct:    4 AIELFYDEASDRTVREIWDGL-GTALGQPSLSELGARPHVSLA-VYGDGYDTNGFPERLLEFARSIDPFDFTLSSLGTFPGQEGVVFLAPVVTRRLLAVHARFHEVFSKHDHV---GMGYYLPGNWVPHCTV 130          
BLAST of mRNA_P-wetherbeei_contig18150.1.1 vs. uniprot
Match: A0A6L7U490_9CHLR (2'-5' RNA ligase family protein n=3 Tax=unclassified Caldilineaceae TaxID=1919254 RepID=A0A6L7U490_9CHLR)

HSP 1 Score: 79.3 bits (194), Expect = 1.540e-15
Identity = 46/130 (35.38%), Postives = 70/130 (53.85%), Query Frame = 1
Query:    1 AIVMTFDTASDTRIRRLWKAFEDR---ALIMPNVGRPHMTMAQIEVDALDRA-AGALAEVASGMHGTRLAFDSIGLFPGEQPVLFLNPVASAGLLALHRRVHDALRKADATLAAGPGHYLPGNWVPHVTL 378
            A+ + FD  SD  +R +W    D    + ++ N GRPH+++A    D   R+    L   +  +   ++   S+G FP E+ V+FL PV ++ LLA+H R   A    +   +A   HYLPGNWVPHVT+
Sbjct:   22 AVELYFDPDSDLAVREIWSGIADAFGLSTMLTNGGRPHVSLAVYSDDFDHRSFLQELPAFSKSLAPLKVQLGSVGTFPTEEGVIFLAPVVTSELLAVHERFRIAFSGFEGCASA---HYLPGNWVPHVTV 148          
BLAST of mRNA_P-wetherbeei_contig18150.1.1 vs. uniprot
Match: UPI00178A0663 (2'-5' RNA ligase family protein n=1 Tax=Rhizobium viscosum TaxID=1673 RepID=UPI00178A0663)

HSP 1 Score: 74.7 bits (182), Expect = 6.160e-14
Identity = 47/107 (43.93%), Postives = 59/107 (55.14%), Query Frame = 1
Query:  100 PHMTMAQIEVDALDRAAGALAEVASGMHGTRLAFDSIGLFPGEQPVLFLNPVASAGLLALHRRVHDALRKADATLAAGPGHYLPGNWVPHVTLGRLRDAGRLGEAMT 420
            PH+++A  +    +  A AL   ++ +    +   SIGLFPG   VLF  PV S  LLALHR  H A   A A +A  P HYLPGNWVPHVTLG        G A++
Sbjct:   41 PHISLAVYDGLDPEPIAKALDRFSADISTPSIKLSSIGLFPGPASVLFAAPVVSEELLALHRDFHAAA--ATAGVACWP-HYLPGNWVPHVTLGEQLSPEEAGAAIS 144          
BLAST of mRNA_P-wetherbeei_contig18150.1.1 vs. uniprot
Match: A0A0G3IQQ1_9MYCO (Uncharacterized protein n=1 Tax=Mycobacterium sp. EPa45 TaxID=1545728 RepID=A0A0G3IQQ1_9MYCO)

HSP 1 Score: 72.4 bits (176), Expect = 4.360e-13
Identity = 50/146 (34.25%), Postives = 74/146 (50.68%), Query Frame = 1
Query:    1 AIVMTFDTASDTRIRRLWKAFEDRAL-----IMPNVGRPHMTMAQIE--VDALDRAAGALAEVASGMHGTRLAFDSIGLFPGEQPVLFLNPVASAGLLALHRRVHDALRKADATLAAGPGHYLPGNWVPHVTLGRLRDAGRLGEAM 417
            +I +  D  +DT +RRLW A  D  L     +  +  RPH+T+   E  V A+D + G LA    G+    +A  +  +F G +  L    VAS  LLA+H +++D      + L A   H +PG W PHVTLGR     ++ EA+
Sbjct:    4 SIELLLDDRADTAVRRLWHALADAGLPSQLRVSSDTNRPHITVIAAEQIVAAVDESLGELA----GLFPLDVALGAPVIFGGGRLTLARLVVASDKLLAVHEKIYDLCLPFVSNLFA---HTMPGQWTPHVTLGRRYTPAQIAEAL 142          
BLAST of mRNA_P-wetherbeei_contig18150.1.1 vs. uniprot
Match: A0A858RQ06_9BACT (2'-5' RNA ligase family protein n=1 Tax=Luteolibacter luteus TaxID=2728835 RepID=A0A858RQ06_9BACT)

HSP 1 Score: 72.4 bits (176), Expect = 4.630e-13
Identity = 45/146 (30.82%), Postives = 69/146 (47.26%), Query Frame = 1
Query:    1 AIVMTFDTASDTRIRRLWKAFEDRAL--IMPNVGRPHMTMAQIEVDALDRAAGALAEVASGMHGTRLAFDSIGLFPGEQPVLFLNPVASAGLLALHRRVHDALRKADATLAAGPGHYLPGNWVPHVTLGRLRDAGRLGEAMTIANE 432
            A+ +  D A++ R+RR+W+      +  +  +  RPH+++A  +    D     L   A    G  + F SIG+FP EQPVLFL P  +  LL LH    D+       +     +Y P  W+PH TL        + EA++I  E
Sbjct:    4 AVELFLDPATEQRVRRIWERLAGIGISYLHGSGSRPHVSLAVCDSIDTDATIELLNRFAEDTSGFPITFSSIGIFPAEQPVLFLAPKVTIPLLELHASFMDSFEPMATRIWP---NYAPSEWIPHCTLAVACPHECVEEALSICRE 146          
BLAST of mRNA_P-wetherbeei_contig18150.1.1 vs. uniprot
Match: J2AXT3_9HYPH (2'-5' RNA ligase n=4 Tax=Rhizobium TaxID=379 RepID=J2AXT3_9HYPH)

HSP 1 Score: 71.2 bits (173), Expect = 1.300e-12
Identity = 45/107 (42.06%), Postives = 55/107 (51.40%), Query Frame = 1
Query:  100 PHMTMAQIEVDALDRAAGALAEVASGMHGTRLAFDSIGLFPGEQPVLFLNPVASAGLLALHRRVHDALRKADATLAAGPGHYLPGNWVPHVTLGRLRDAGRLGEAMT 420
            PH+++A  +    +    AL   ++ M    +   SIGLFPG   VLF  PV S  LL LHR  H A   A A  A  P HYLP NWVPHVTLG        G A++
Sbjct:   41 PHISLAVYDGLDPEPLTNALDRFSANMSAPSVKLSSIGLFPGPASVLFAAPVVSEELLILHRDFHAAAASAGA--ACWP-HYLPENWVPHVTLGEQLSPEEAGAAIS 144          
BLAST of mRNA_P-wetherbeei_contig18150.1.1 vs. uniprot
Match: UPI00141E2DED (2'-5' RNA ligase family protein n=1 Tax=Mycobacterium sp. DL592 TaxID=2675524 RepID=UPI00141E2DED)

HSP 1 Score: 70.9 bits (172), Expect = 1.690e-12
Identity = 59/148 (39.86%), Postives = 75/148 (50.68%), Query Frame = 1
Query:    1 AIVMTFDTASDTRIRRLWKAFEDRAL-----IMPNVGRPHMTM--AQIEVDALDRAAGALAE--VASGMHGTRLAFDSIGLFPGEQPVLFLNPVASAGLLALHRRVHDALRKADATLAAGP-GHYLPGNWVPHVTLGRLRDAGRLGEA 414
            +I +T D  SD  IR+LW+A +D  L     +     RPH+T+  AQ     +D A  ALA+      + G  L F       G + VL    VASA LL LHR V+D   +    LA  P GH  PG W PHVTLGR   A +LG+A
Sbjct:    4 SIELTLDAHSDAAIRQLWQALDDAGLPSQTRVTSATNRPHITLLAAQRISPDVDAAWTALAQRIPLPVLVGAPLVFG------GGRLVLARLIVASAALLELHREVYD---RCLPHLAGEPYGHTAPGQWTPHVTLGRRLTAEQLGDA 142          
BLAST of mRNA_P-wetherbeei_contig18150.1.1 vs. uniprot
Match: A0A563EUG6_9PSEU (2'-5' RNA ligase family protein n=2 Tax=Lentzea tibetensis TaxID=2591470 RepID=A0A563EUG6_9PSEU)

HSP 1 Score: 64.7 bits (156), Expect = 3.550e-10
Identity = 45/126 (35.71%), Postives = 65/126 (51.59%), Query Frame = 1
Query:    1 AIVMTFDTASDTRIRRLWKAFEDRALIMPNVGRPHMTMAQIEVDALDRAAGALAEVASGMHGTRLAFDSIGLFPGEQPVLFLNPVASAGLLALHRRVHDALRKADATLAAGPGHYLPGNWVPHVTL 378
            A+V  FD  +D ++R LW+      L + +   PH+T A +      +A   L E  S +    L   ++G+F   + VL L+ V  A LLA+H  +HD L       +A   +YLPGNWVPHVTL
Sbjct:    4 ALVAFFDDEADAKVRGLWQQ-----LGVKHEYPPHLTYA-VAGTIGPKARAELREDLSRLWVPDLWLHTLGVFSATENVLHLSAVVDAELLAVHSAIHDVLAGKVRNPSA---YYLPGNWVPHVTL 120          
BLAST of mRNA_P-wetherbeei_contig18150.1.1 vs. uniprot
Match: UPI00143CBB4D (2'-5' RNA ligase family protein n=1 Tax=Falsiroseomonas frigidaquae TaxID=487318 RepID=UPI00143CBB4D)

HSP 1 Score: 63.9 bits (154), Expect = 6.710e-10
Identity = 47/127 (37.01%), Postives = 65/127 (51.18%), Query Frame = 1
Query:    1 AIVMTFDTASDTRIRRLWKAFEDRALIMPNVGRP-HMTMAQIEVDALDRAAGALAEVASGMHGTRLAFDSIGLFPGEQPVLFLNPVASAGLLALHRRVHDALRKADATLAAGPGHYLPGNWVPHVTL 378
            A+ +  D   +  + RL  A      + P +G P H+T+ + E +     A A+A  A+ +    LAF   G+FPG   +LFL PV ++ LLALH  + DAL  ADA       H  PG WVPH TL
Sbjct:    4 AVTLRMDARGEAVLARLGAALP--GWVTPQLGYPPHITLLRGEDEVEPDFARAMA--AAQVGAVDLAFAGFGIFPGPPAILFLAPVVTSALLALHAALADAL-PADALHP----HVRPGAWVPHATL 121          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18150.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7W5TGP2_9HYPH2.640e-1646.602'-5' RNA ligase n=4 Tax=Rhizobium TaxID=379 RepID... [more]
A0A6G2JP02_9BACT1.430e-1537.882'-5' RNA ligase family protein n=1 Tax=Gemmatimon... [more]
A0A6L7U490_9CHLR1.540e-1535.382'-5' RNA ligase family protein n=3 Tax=unclassifi... [more]
UPI00178A06636.160e-1443.932'-5' RNA ligase family protein n=1 Tax=Rhizobium ... [more]
A0A0G3IQQ1_9MYCO4.360e-1334.25Uncharacterized protein n=1 Tax=Mycobacterium sp. ... [more]
A0A858RQ06_9BACT4.630e-1330.822'-5' RNA ligase family protein n=1 Tax=Luteolibac... [more]
J2AXT3_9HYPH1.300e-1242.062'-5' RNA ligase n=4 Tax=Rhizobium TaxID=379 RepID... [more]
UPI00141E2DED1.690e-1239.862'-5' RNA ligase family protein n=1 Tax=Mycobacter... [more]
A0A563EUG6_9PSEU3.550e-1035.712'-5' RNA ligase family protein n=2 Tax=Lentzea ti... [more]
UPI00143CBB4D6.710e-1037.012'-5' RNA ligase family protein n=1 Tax=Falsiroseo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18150contigP-wetherbeei_contig18150:115..555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog492774.JQMB01000007_gene4005
PFAMs2_5_RNA_ligase2,LigT_PEase
Model size441
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.15e-15
EggNOG OGsCOG1514@1|root,COG1514@2|Bacteria
DescriptionHydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
Cds size432
COG categoryJ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186137.4735978-UTR-P-wetherbeei_contig18150:114..1231683186137.4735978-UTR-P-wetherbeei_contig18150:114..123Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18150 115..123 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186137.4823437-CDS-P-wetherbeei_contig18150:123..5551683186137.4823437-CDS-P-wetherbeei_contig18150:123..555Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18150 124..555 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18150.1.1prot_P-wetherbeei_contig18150.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18150 124..555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18150.1.1

>prot_P-wetherbeei_contig18150.1.1 ID=prot_P-wetherbeei_contig18150.1.1|Name=mRNA_P-wetherbeei_contig18150.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=144bp
MTFDTASDTRIRRLWKAFEDRALIMPNVGRPHMTMAQIEVDALDRAAGAL
AEVASGMHGTRLAFDSIGLFPGEQPVLFLNPVASAGLLALHRRVHDALRK
ADATLAAGPGHYLPGNWVPHVTLGRLRDAGRLGEAMTIANEFRL
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mRNA from alignment at P-wetherbeei_contig18150:115..555+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18150.1.1 ID=mRNA_P-wetherbeei_contig18150.1.1|Name=mRNA_P-wetherbeei_contig18150.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig18150:115..555+ (Phaeothamnion wetherbeei SAG_119_79)
GCCATCGTCATGACGTTCGATACGGCGTCCGATACCCGCATCCGCCGGCT CTGGAAGGCGTTCGAGGATCGTGCGCTGATCATGCCGAACGTCGGCCGAC CGCACATGACGATGGCGCAGATCGAGGTGGACGCGCTCGACCGCGCCGCC GGGGCGCTGGCCGAGGTGGCGTCGGGGATGCACGGCACGCGGCTGGCGTT CGACAGCATCGGCCTCTTTCCGGGCGAGCAGCCGGTGCTCTTCCTCAACC CGGTGGCCAGCGCCGGACTGCTCGCCCTGCACCGCCGCGTCCACGACGCG CTACGGAAGGCGGATGCCACCCTCGCGGCCGGTCCGGGCCATTACCTGCC GGGGAACTGGGTGCCGCATGTGACGCTGGGCCGCCTGCGCGATGCCGGAC GGCTCGGCGAGGCGATGACGATCGCCAACGAATTCCGCCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18150:115..555+

>mRNA_P-wetherbeei_contig18150.1.1 ID=mRNA_P-wetherbeei_contig18150.1.1|Name=mRNA_P-wetherbeei_contig18150.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig18150:115..555+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGTTCGATACGGCGTCCGATACCCGCATCCGCCGGCTCTGGAAGGC
GTTCGAGGATCGTGCGCTGATCATGCCGAACGTCGGCCGACCGCACATGA
CGATGGCGCAGATCGAGGTGGACGCGCTCGACCGCGCCGCCGGGGCGCTG
GCCGAGGTGGCGTCGGGGATGCACGGCACGCGGCTGGCGTTCGACAGCAT
CGGCCTCTTTCCGGGCGAGCAGCCGGTGCTCTTCCTCAACCCGGTGGCCA
GCGCCGGACTGCTCGCCCTGCACCGCCGCGTCCACGACGCGCTACGGAAG
GCGGATGCCACCCTCGCGGCCGGTCCGGGCCATTACCTGCCGGGGAACTG
GGTGCCGCATGTGACGCTGGGCCGCCTGCGCGATGCCGGACGGCTCGGCG
AGGCGATGACGATCGCCAACGAATTCCGCCTG
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