mRNA_P-wetherbeei_contig1815.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1815.3.1
Unique NamemRNA_P-wetherbeei_contig1815.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1815.3.1 vs. uniprot
Match: A0A835YQT7_9STRA (Transmembrane 9 superfamily member n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQT7_9STRA)

HSP 1 Score: 189 bits (479), Expect = 5.690e-53
Identity = 107/232 (46.12%), Postives = 132/232 (56.90%), Query Frame = 1
Query:    1 QYAVGERVDLWVNKIGPYGNPQETYPFYRLPFCKPQLNVGTRKKNAGIGEILAGNELRNSGYSIHFTVPARR---------------------------------------------------GGQLLVQHVSRRSSHLRQGGPGQSVVQQPMQGRGSVHRDRLELNV-VHWTPTLKSFNDRFDRYLDYSFFEHQIHWFSIFNSFMMVIFLCGLVALILVRTLRNDFAKASR 540
            +Y  GER+ +WVNK+GPY NPQETYP+YRLPFC+P + V +++K  G+GEILAGN+LR+SG+S+ F V   R                                                   GG+    ++ R+ S L  G     V+      +  V    LE +  V WT T KSF DRF+RYLDY FFEHQIHWFSIFNSFMMVIFLCGLVALIL+RTLRNDFAK +R
Sbjct:   27 KYTPGERMTVWVNKVGPYFNPQETYPYYRLPFCRPDMGVESKRKRQGMGEILAGNDLRDSGFSLQFNVNQPRVPVCKVALDAATLKTFRRAVEENYWYNMYIDDLPLWGMVGRMPQGNGAAALGGEDPYIYLHRKLSILYNGNRVIEVMLLSENLKPLVPGAELEFSFEVSWTATTKSFEDRFNRYLDYDFFEHQIHWFSIFNSFMMVIFLCGLVALILLRTLRNDFAKYTR 258          
BLAST of mRNA_P-wetherbeei_contig1815.3.1 vs. uniprot
Match: D8LEY0_ECTSI (Transmembrane 9 superfamily member n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEY0_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 1.780e-52
Identity = 116/268 (43.28%), Postives = 144/268 (53.73%), Query Frame = 1
Query:    1 QYAVGERVDLWVNKIGPYGNPQETYPFYRLPFCKPQLNVGTRKKN-AGIGEILAGNELRNSGYSIHFTVPARRGG---QLLVQHVSRRSSHL----------------------------------RQGGPGQSVVQQP--MQGRGSVHRDRLELN--VVHWTPTLKSFNDRFDRYLDYSFFEHQIHWFSIFNSFMMVIFLCGLVALILVRTLRNDFAKASRPCRQYCGSLPYLSGLIGQSCGGYTKDEDDFEGVDRSIGEDSGWKQV 678
            +Y  GE V +WVN +GP+ NPQE+YP+YRLPFC P L  GT++K  +G+GE+LAGNELRNSG  + F VP  +     QLL Q  + +  +                                   R+  PG  V Q+   +     + R   EL+  VV W  T   F+ RFD YLD  FF+H+IHWFSI NSFMMVIFLCGLVALILV+TL+NDFAK                         Y+ D+DD EG D  IGEDSGWKQV
Sbjct:   45 KYHDGESVIVWVNTVGPWNNPQESYPYYRLPFCVPGLVDGTKQKRPSGLGELLAGNELRNSGMDVKFKVPLPKTALCTQLLDQTSAAQFRNAVEQKYLANIYIDDLPIYGPVGSXXXXXXXXXXEGREKEPGIYVNQRYTILYNGNRIIRVMFELDTPVVAWVETDVPFDKRFDHYLDPKFFKHRIHWFSIINSFMMVIFLCGLVALILVKTLKNDFAK-------------------------YSPDDDDLEGPDAGIGEDSGWKQV 287          
BLAST of mRNA_P-wetherbeei_contig1815.3.1 vs. uniprot
Match: A0A482RP88_9ARCH (Transmembrane 9 family protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RP88_9ARCH)

HSP 1 Score: 169 bits (429), Expect = 4.720e-49
Identity = 110/265 (41.51%), Postives = 137/265 (51.70%), Query Frame = 1
Query:   34 VNKIGPYGNPQETYPFYRLPFCKPQLNVGTRKKNAGIGEILAGNELRNSGYSIHFTVPARRGG----QLLVQHVSRRSS-------------HLRQGGPGQSVVQQPMQGRGSVH------------RDRL-ELNV-------------------VHWTPTLKSFNDRFDRYLDYSFFEHQIHWFSIFNSFMMVIFLCGLVALILVRTLRNDFAKASRPCRQYCGSLPYLSGLIGQSCGGYTKDED-DFEGVDRSIGEDSGWKQV 678
            +N IGPY NPQETYP+Y LPFCKP+  + T K+ +G+GE L GNELRNSG  +HF V   +       L  + V++                 L   G     ++    GR   H            +DR+ E+N+                   V W  + KSF DRF RYL+Y FFEH+IHWFS+FNSFMMV+FLCGLVALIL+RTLRND AK                         Y +DED D EG+ + IGEDSGWKQV
Sbjct:    1 MNTIGPYHNPQETYPYYSLPFCKPEHGIETSKRPSGLGEFLEGNELRNSGVKLHFHVDINKEDVCDMTLTAESVAQFEKAVDEQYWYELFLDDLPMWGMVGETMRDDAHGRMEKHIFTHRSLSISYNQDRIIEVNLTSENPVPLEAGRQLQFTYSVRWHGSPKSFEDRFSRYLEYDFFEHKIHWFSVFNSFMMVLFLCGLVALILLRTLRNDLAK-------------------------YARDEDLDVEGM-QVIGEDSGWKQV 239          
BLAST of mRNA_P-wetherbeei_contig1815.3.1 vs. uniprot
Match: A0A6H5KXN7_9PHAE (Transmembrane 9 superfamily member n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXN7_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 2.750e-48
Identity = 110/268 (41.04%), Postives = 140/268 (52.24%), Query Frame = 1
Query:    1 QYAVGERVDLWVNKIGPYGNPQETYPFYRLPFCKPQLNVGTRKKN-AGIGEILAGNELRNSGYSIHFTVPARRGG---QLLVQ-------------------------------------HVSRRSSHLRQGGPGQSVVQQPMQGRGSVHRDRLELNV-VHWTPTLKSFNDRFDRYLDYSFFEHQIHWFSIFNSFMMVIFLCGLVALILVRTLRNDFAKASRPCRQYCGSLPYLSGLIGQSCGGYTKDEDDFEGVDRSIGEDSGWKQV 678
            +Y  GE V +WVN +GP+ NPQE+YP+Y LPFC P L  GT++K  +G+GE+LAGNELRNSG  + F VP  +     QLL Q                                     +V++R + L  G     V+ +P           L+    V W  +   F+ RFD YL+  FF+H+IHWFSI NSFMMV+FLCGLVALILV+TL+NDFAK                         YT D+DD EG D  +GEDSGWKQV
Sbjct:   45 KYHDGESVIVWVNTVGPWYNPQESYPYYHLPFCVPDLVEGTKQKRPSGLGELLAGNELRNSGMDVKFKVPLPKTALCTQLLDQTSAAQFRNAVEQEYWANIYIDDLPIDGPVGSKEELDIYVNQRYTILYNGNRIIRVLFEPDTAVAIAAGTALDFTYEVAWVESDVPFDKRFDSYLEPKFFKHRIHWFSIINSFMMVVFLCGLVALILVKTLKNDFAK-------------------------YTPDDDDLEGPDAGVGEDSGWKQV 287          
BLAST of mRNA_P-wetherbeei_contig1815.3.1 vs. uniprot
Match: A0A2R5GE31_9STRA (Transmembrane 9 superfamily member n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GE31_9STRA)

HSP 1 Score: 171 bits (432), Expect = 4.000e-46
Identity = 111/289 (38.41%), Postives = 145/289 (50.17%), Query Frame = 1
Query:    4 YAVGERVDLWVNKIGPYGNPQETYPFYRLPFCKPQLNVGTRKKNAGIGEILAGNELRNSGYSIHF--TVPARR----------------------GGQLLV-------------------QHVSRRSSH--------------LRQGGPGQSVVQQPMQGRGSVHRDRLELNV-------VHWTPTLKSFNDRFDRYLDYSFFEHQIHWFSIFNSFMMVIFLCGLVALILVRTLRNDFAKASRPCRQYCGSLPYLSGLIGQSCGGYTKDEDDFEGVDRSIGEDSGWKQV 678
            YA  E V LW+NKIGPY NPQETY +Y LPFC P+ N  TRKK  GIGE+L GN+L  S  +++F   VP R                         QL +                   + + + +SH              L  G  G  +++  +    S  R ++E NV       V W P  K+F +RF+RYLDYSFFEHQIHWFSIFN+FMMV+FLCGLV+LIL+RTL+ND A+                         Y  D++ F+G DR  G+D+GWKQ+
Sbjct:   37 YADKEPVVLWLNKIGPYHNPQETYTYYSLPFCVPEGNFHTRKKYVGIGEVLEGNDLVQSAMTMNFGINVPRRELCSQTLTPEQAETFKYAISQHYWYQLFIDDLPVWGMVGEIAASKEELEELEKDTSHEHAVMPSHIFTHKALTIGYNGNQIIEVNL---SSKERRKVEPNVKLVFSYSVEWVPVEKTFAERFNRYLDYSFFEHQIHWFSIFNAFMMVVFLCGLVSLILMRTLKNDLAR-------------------------YATDKE-FDGFDRDFGDDAGWKQI 296          
BLAST of mRNA_P-wetherbeei_contig1815.3.1 vs. uniprot
Match: A0A1R3K3E1_9ROSI (Transmembrane 9 superfamily member n=3 Tax=Malvaceae TaxID=3629 RepID=A0A1R3K3E1_9ROSI)

HSP 1 Score: 161 bits (407), Expect = 9.340e-46
Identity = 94/227 (41.41%), Postives = 126/227 (55.51%), Query Frame = 1
Query:    4 YAVGERVDLWVNKIGPYGNPQETYPFYRLPFCKPQLNVGTRKKNAGIGEILAGNELRNSGYSIHFTVPARRGGQLLVQHVSRRSSHLRQGGPGQSVVQQPMQ-GRGSVHRDRLELNV-VHWTPTLKSFNDRFDRYLDYSFFEHQIHWFSIFNSFMMVIFLCGLVALILVRTLRNDFAKASRPCRQYCGSLPYLSGLIGQSCGGYTKDEDDFEGVDRSIGEDSGWKQV 678
            Y   + + LWVNK+GPY NPQETY +Y LPFC P  N     K  G+GE+L GNEL +S   I F     +     ++    +  H+         + +P++ GR       L++   + W PT  +F  RFD YLDY FFEHQIHWFS+FNSFMMVIFL GLV++IL+RTLRND+AK                         Y +++DD E ++R + E+SGWK V
Sbjct:    2 YQPDDPITLWVNKVGPYNNPQETYNYYSLPFCHPGTNPA--HKWGGLGEVLGGNELIDSQIDIKFLKNVDKSTICQLELDEAKIIHVNL----TQEIPKPLEAGR------MLDMTYSIKWIPTNVTFARRFDVYLDYPFFEHQIHWFSVFNSFMMVIFLTGLVSMILMRTLRNDYAK-------------------------YAREDDDLETLERDVSEESGWKLV 191          
BLAST of mRNA_P-wetherbeei_contig1815.3.1 vs. uniprot
Match: A0A7S3M626_9STRA (Transmembrane 9 superfamily member (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M626_9STRA)

HSP 1 Score: 162 bits (410), Expect = 3.220e-45
Identity = 102/258 (39.53%), Postives = 132/258 (51.16%), Query Frame = 1
Query:   58 NPQETYPFYRLPFCKPQLNVGTRKKNAGIGEILAGNELRNSGYSIHFTVPARRGGQLLVQHVSRRSS------------------HLRQGGPGQSVVQQPMQGRGSVH-------------RDRLELNV-------------------VHWTPTLKSFNDRFDRYLDYSFFEHQIHWFSIFNSFMMVIFLCGLVALILVRTLRNDFAKASRPCRQYCGSLPYLSGLIGQSCGGYTKDED-DFEGVDRSIGEDSGWKQV 678
            NPQETYP+Y+LP+CKP   + T+K+ +GIGE+L GNELRNSG+ +HF     R   +    + + ++                   L   G    V++    GR   H                +E+N+                   VHW  T KSF  RF+RYL+Y FFEH+IHWFSIFNSFMMVIFLCGLVA+I+ RTL+NDFA+                         Y KDED D EG+ + IGED+GWKQV
Sbjct:    2 NPQETYPYYQLPYCKPDHGIDTKKRASGIGEVLEGNELRNSGFKLHFATNVDRE-DICDMKLDKETAAEFEVAVDQQYWYELVLDDLPMWGMVGEVLRDDTHGRMEKHIFTHRSLSIAYSGNRIIEVNLTSENPVPIEAGQQLSFTYSVHWKETTKSFEKRFNRYLEYDFFEHKIHWFSIFNSFMMVIFLCGLVAIIMFRTLKNDFAR-------------------------YAKDEDLDVEGL-QVIGEDTGWKQV 232          
BLAST of mRNA_P-wetherbeei_contig1815.3.1 vs. uniprot
Match: A0A061RAB8_9CHLO (Transmembrane 9 superfamily member n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RAB8_9CHLO)

HSP 1 Score: 166 bits (421), Expect = 1.330e-44
Identity = 110/282 (39.01%), Postives = 141/282 (50.00%), Query Frame = 1
Query:    1 QYAVGERVDLWVNKIGPYGNPQETYPFYRLPFCKPQLNVGTRKKNAGIGEILAGNELRNSGYSIHFT--VPAR-------RGGQLLV-------------------------QHVSRRSSHLRQGGP------------------GQSVVQQPMQG---RGSVHRDRLELNV-VHWTPTLKSFNDRFDRYLDYSFFEHQIHWFSIFNSFMMVIFLCGLVALILVRTLRNDFAKASRPCRQYCGSLPYLSGLIGQSCGGYTKDEDDFEGVDRSIGEDSGWKQV 678
            +YAVG+ V LWVNK+GPY NPQETY ++ LPFCKP+ +     +  G+GE+L GNEL NS   I F   VP R           + V                         ++VS  +S   +GGP                  G  ++Q  +     R  V    LE    V W  T   F  RF+RYLDY+FFEHQIHWFSIFNSFMMVIFL GLV++IL+RTLRND+AK                         Y+++EDD E ++R + E+SGWK V
Sbjct:   35 KYAVGDPVKLWVNKVGPYNNPQETYNYFTLPFCKPRPDDKPEHRWGGLGEVLEGNELINSQVDIRFRLDVPKRVLCEDPLSSESVTVFKNAIKEHYWYELFMDDLPIWGFVGEYVSAETSRA-EGGPAEEQIYIYTHKSFDINYNGNRIIQVNLTSESPRPLVEGSNLEFTYSVKWQQTSIPFRRRFERYLDYNFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAK-------------------------YSREEDDLETLERDVSEESGWKLV 290          
BLAST of mRNA_P-wetherbeei_contig1815.3.1 vs. uniprot
Match: A0A7S0MQZ3_9CHLO (Transmembrane 9 superfamily member n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MQZ3_9CHLO)

HSP 1 Score: 165 bits (418), Expect = 3.430e-44
Identity = 103/278 (37.05%), Postives = 138/278 (49.64%), Query Frame = 1
Query:    1 QYAVGERVDLWVNKIGPYGNPQETYPFYRLPFCKPQLNVGTRKKNAGIGEILAGNELRNSGYSIHFTVPARRG---GQLLVQHVSRRSSHLRQGGPGQSVVQQPMQGRGSV--------------------HRDRLELNV-----------------------------VHWTPTLKSFNDRFDRYLDYSFFEHQIHWFSIFNSFMMVIFLCGLVALILVRTLRNDFAKASRPCRQYCGSLPYLSGLIGQSCGGYTKDEDDFEGVDRSIGEDSGWKQV 678
            +YA+G+ + LWVNK+GPY NPQETY +Y LPFCKP+   G  K   G+GE+L GNEL +S   I F +  ++     ++L +    +  H  +      +    +   G V                    HR R+E+N                              V W P+   F  RF+RYLDY+FFEHQIHWFSIFNSFMMVIFL GLV++IL+RTLRND+AK                         Y ++EDD E ++R + E+SGWK V
Sbjct:   37 RYAIGDPLTLWVNKVGPYNNPQETYNYYELPFCKPKAEKGVHKWG-GLGEVLEGNELIDSQIDIRFRMEVQKRVICSEILDEKTVNKFKHAIKHHYWYELFMDDLPIWGFVGEFVSGDKKTNTEDQVFIYTHR-RIEINYNGEQVIQVNLTSENPQALVPGAQLEFVYSVRWEPSDIKFGKRFERYLDYNFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAK-------------------------YAREEDDVEAMERDLSEESGWKLV 287          
BLAST of mRNA_P-wetherbeei_contig1815.3.1 vs. uniprot
Match: A0A6U4JKR6_9STRA (Transmembrane 9 superfamily member n=6 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4JKR6_9STRA)

HSP 1 Score: 163 bits (412), Expect = 3.850e-43
Identity = 108/279 (38.71%), Postives = 140/279 (50.18%), Query Frame = 1
Query:    1 QYAVGERVDLWVNKIGPYGNPQETYPFYRLPFCKPQLNVGTRKKNAGIGEILAGNELRNSGYSIHFT----------VPARRGGQLLVQHVSRRSSHLRQ---------GGPGQSVVQQPMQGRG--------------SVHRDRL-ELNV-------------------VHWTPTLKSFNDRFDRYLDYSFFEHQIHWFSIFNSFMMVIFLCGLVALILVRTLRNDFAKASRPCRQYCGSLPYLSGLIGQSCGGYTKDEDDFEGVDRSIGEDSGWKQV 678
            +Y   E V LWVNK+GPY NPQETYP++ LPFCKP   V T+K+ A +GE+L G+ELRNSG SI F           +P  R    +    + R ++            G  G   V     G                S + DR+ E+N+                   V W+PT K F +RF+RYLD  FFEHQIHWFSIFNSFMMVIFLCGLV LIL+RT++NDFAK                         Y ++E++ E     + ++SGWKQ+
Sbjct:   51 KYESWENVVLWVNKVGPYHNPQETYPYFSLPFCKPSDGVKTKKRRAHLGEVLDGHELRNSGISIDFQRTIEKQPICEIPKLRKMDAMEFKRAVRQNYWYNMYVDDLPIWGMVGNVTVHVEDTGLKRKTPVIFTHRTLDISYNNDRIIEVNLTSQNPVEIQEGANLKFTMSVRWSPTDKKFANRFERYLDNEFFEHQIHWFSIFNSFMMVIFLCGLVFLILIRTVKNDFAK-------------------------YAREEEEAE---PGLSDESGWKQL 301          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1815.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YQT7_9STRA5.690e-5346.12Transmembrane 9 superfamily member n=1 Tax=Tribone... [more]
D8LEY0_ECTSI1.780e-5243.28Transmembrane 9 superfamily member n=1 Tax=Ectocar... [more]
A0A482RP88_9ARCH4.720e-4941.51Transmembrane 9 family protein (Fragment) n=1 Tax=... [more]
A0A6H5KXN7_9PHAE2.750e-4841.04Transmembrane 9 superfamily member n=1 Tax=Ectocar... [more]
A0A2R5GE31_9STRA4.000e-4638.41Transmembrane 9 superfamily member n=1 Tax=Hondaea... [more]
A0A1R3K3E1_9ROSI9.340e-4641.41Transmembrane 9 superfamily member n=3 Tax=Malvace... [more]
A0A7S3M626_9STRA3.220e-4539.53Transmembrane 9 superfamily member (Fragment) n=1 ... [more]
A0A061RAB8_9CHLO1.330e-4439.01Transmembrane 9 superfamily member n=2 Tax=Tetrase... [more]
A0A7S0MQZ3_9CHLO3.430e-4437.05Transmembrane 9 superfamily member n=1 Tax=Pyramim... [more]
A0A6U4JKR6_9STRA3.850e-4338.71Transmembrane 9 superfamily member n=6 Tax=Phaeomo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1815contigP-wetherbeei_contig1815:3903..6451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LEY0
Preferred nameTM9SF3
PFAMsEMP70
Model size678
Max annot lvl2759|Eukaryota
KEGG koko:K02639,ko:K17087
KEGG Pathwayko00195,map00195
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005795,GO:0005797,GO:0005801,GO:0005802,GO:0012505,GO:0016020,GO:0016021,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0097708,GO:0098791
Exons5
Evalue2.91e-53
EggNOG OGsKOG1278@1|root,KOG1277@2759|Eukaryota
Ec32 ortholog descriptionNonaspanin (TM9SF)
Ec32 orthologEc-21_005980.1
Descriptionsecretion of lysosomal enzymes
Cds size678
COG categoryI
BRITEko00000,ko00001,ko00194,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186137.4112456-CDS-P-wetherbeei_contig1815:3902..39681683186137.4112456-CDS-P-wetherbeei_contig1815:3902..3968Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1815 3903..3968 +
1683186137.4206505-CDS-P-wetherbeei_contig1815:4180..43161683186137.4206505-CDS-P-wetherbeei_contig1815:4180..4316Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1815 4181..4316 +
1683186137.4281478-CDS-P-wetherbeei_contig1815:4725..48741683186137.4281478-CDS-P-wetherbeei_contig1815:4725..4874Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1815 4726..4874 +
1683186137.4357784-CDS-P-wetherbeei_contig1815:5995..62501683186137.4357784-CDS-P-wetherbeei_contig1815:5995..6250Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1815 5996..6250 +
1683186137.4454508-CDS-P-wetherbeei_contig1815:6379..64511683186137.4454508-CDS-P-wetherbeei_contig1815:6379..6451Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1815 6380..6451 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1815.3.1prot_P-wetherbeei_contig1815.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1815 3903..6451 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1815.3.1

>prot_P-wetherbeei_contig1815.3.1 ID=prot_P-wetherbeei_contig1815.3.1|Name=mRNA_P-wetherbeei_contig1815.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=226bp
QYAVGERVDLWVNKIGPYGNPQETYPFYRLPFCKPQLNVGTRKKNAGIGE
ILAGNELRNSGYSIHFTVPARRGGQLLVQHVSRRSSHLRQGGPGQSVVQQ
PMQGRGSVHRDRLELNVVHWTPTLKSFNDRFDRYLDYSFFEHQIHWFSIF
NSFMMVIFLCGLVALILVRTLRNDFAKASRPCRQYCGSLPYLSGLIGQSC
GGYTKDEDDFEGVDRSIGEDSGWKQV
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mRNA from alignment at P-wetherbeei_contig1815:3903..6451+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1815.3.1 ID=mRNA_P-wetherbeei_contig1815.3.1|Name=mRNA_P-wetherbeei_contig1815.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2549bp|location=Sequence derived from alignment at P-wetherbeei_contig1815:3903..6451+ (Phaeothamnion wetherbeei SAG_119_79)
CAGTACGCTGTCGGGGAGAGGGTAGACCTCTGGGTCAACAAAATCGGACC ATACGGCAATCCGCAGGTGCGTTGTCGCCTTACACTGCATTGCTAGCGAT CCGGCGGGCGTTCCTGCTTCCGTCCCTGGTGAATGCTCGCATTTCGGCAT TCTTGCATTAGCTCCCGATTATTGAGAAGACGATGTCTGGATTGGTCTCC CATGCACACTCTCCTCCTGACACTTATCCTTCCCGCTCGAAACGACGATA CTTCCCAAACGATGCCCTTTCTTTACAGGAGACATATCCGTTCTACCGGC TGCCGTTCTGCAAGCCCCAACTGAACGTCGGGACCCGAAAGAAGAATGCG GGGATCGGCGAGATTCTCGCGGGCAACGAGCTCCGCAATTCTGGGTACTC CATCCATTTCACAGGTACCACTATCGCGTCGCGTTTCTGACGAAGAGGTT GCGCGCTGGAGACGAGGCGAGAATTCTTGATGCCTGTGATGGCGGACTCG TTTCCGCTGTGCCCTCTCATCCCGGTGGTAGGCCTTCACCTTCGCTTCGC TCTTATCCCCCCACCCCCGCAATCCTCGCGACGACGCGCGCTGCGGTGGC CGCCTGGCCGGACCCTGCTCACCATTCCCCGGGATTCTTCCTCCCTCATC GCCGTCGACGCGACGGTGACGGCGTTTGCGTCTGTGGCGACGACGAGGAT GACGACGGCGGCGGCGGCGGGGGCGGCGGCGAGCGGCTCTGTCGGCGGGC GGCCGCGTCTGCAGAGGACCTTGAGCGGGTGTCGCTCTGCAAGCAGGTGC TGACACCGGAGCAGCTGGCGGAGTTCCGGCACGCCGTGGCGGACAACTAC TGGTACAACATGTATCTCGACGATCTTCCCATCTACGGCAGGGTGGGCCA GGTCAGTCAGTAGTACAGCAGCCGATGCAGGGGCGCGGCTCGGTGCACCG CGATCGACTTGAGTTGAACGTGGTCTCCGCCCGCCGACCTGCCGGTGAAT CCATTTCACATTGTCCCTCTTTCTGGTCGAGCTCGTGACGGGAAAGCAAA CGGACAGGTTTCTTGGCTCATTGTCTAGTTCATTCTTCCTTTTTTTGCCG TTTTACAGTTGGTTTATAAATTTTGTGGTGGCTTTTCAACGTTATGGGGT GTAACGCTTCCATTCGTCGGCGTGAGGAGCAATTTAAACCCGTATCTGCA GTAAGTTGATTCGCAAACAAGGCAACCGATCTCTTACCGGCTCCAGGGAT TTGTCCTGGCTGGCTCGCTGACTTCCCTTGCTGCCTGCCGCTCCGTTTCG CCTTCGAGGTAGGGCATTTTTTGTCTGGTACTTCTTCTGTCTCTTGACGA CTCTTTGCCTCTTGCTGGCTGTCGCCACCCGCCCTTTCCACACATCCCCG CGGCTTGGCAGCTGGCACCACAGCGGGCGGGGGTGGCACCAAAGGAACTC GAGGTAAAGGTCGCGGCGGGGGCGGCCGGGGGAGCCGAAGAGGAGGACAT GCGGCCGATGGAAATCTTCACACACCGGCGGCTCGACATCTCCTTCAACG GGAACCGCATCATCGAGGTCAATCTTACCACGAGCGAGAACCCCGTGCCG CTCATCGAAGGAGCCGAAATCGAGTTCTCCTACCAGGTCGGTGGTCCGGC TCTGCTCCTGCACTGCCTTGTCCTTCCGCCGCTGCCGGGTTTTCCTTCAG ACAGTTAGATGCCAGATTTATGCCCGTTCCTTCTCTTTCTGGAAGAGGCT CTATTGTTCCGTTCCCCGCGCAGATTTTGTTGAACTGCCTTTCTCGTGTT CACCTTCTTGTGTTTCCGTTCCGCTTGGGAGCGATCTCTGTCCGGACTAT CGAGCTGGACGGCGGCACTTGCCTGCTTCAAGCTCTTGTAGTTGCTGTGG TTGGGTTTCCGGCACCGTATCGACGGTTGATCTACTCACAACTAGGCATC AGAAAGTTTTCCCAGAAACGGTTTTTGGTCAGAAAGTGGAAACGCTGAAA GTAGTGATCACCTTGCCCCTTCCTACTGCTCTCGTGCTTCATGTTTCCGT CCGCGGCGCTGTTTTGCCTACCTTGTTCCTTACCTGACAACAGGTGCACT GGACGCCGACGCTGAAGAGTTTCAATGACCGCTTCGACCGCTACCTTGAC TACTCCTTCTTCGAGCACCAGATCCACTGGTTCTCTATCTTCAACTCTTT CATGATGGTCATCTTCCTCTGCGGACTTGTCGCCCTTATCCTTGTCCGCA CCCTCCGCAATGACTTCGCCAAGGCGAGCCGACCCTGCAGGCAATATTGC GGATCATTGCCGTATCTTTCTGGCTTGATTGGCCAAAGCTGCGGCGGGGT TCAGGAGGCGGGAAAGTTGCTGTTTTGCCCAATGGTGGCATGTAGGCCAA AAAAGGCGAGTGTTCCGTGTTCCCTCTTTCCCTTGACCAGCTTTTACTCA TCTTTTCCATCCTTTCTGTCATTGCAGTACACAAAAGACGAAGACGACTT TGAAGGCGTCGATCGCTCCATCGGCGAGGATTCGGGATGGAAACAGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1815:3903..6451+

>mRNA_P-wetherbeei_contig1815.3.1 ID=mRNA_P-wetherbeei_contig1815.3.1|Name=mRNA_P-wetherbeei_contig1815.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=678bp|location=Sequence derived from alignment at P-wetherbeei_contig1815:3903..6451+ (Phaeothamnion wetherbeei SAG_119_79)
CAGTACGCTGTCGGGGAGAGGGTAGACCTCTGGGTCAACAAAATCGGACC
ATACGGCAATCCGCAGGAGACATATCCGTTCTACCGGCTGCCGTTCTGCA
AGCCCCAACTGAACGTCGGGACCCGAAAGAAGAATGCGGGGATCGGCGAG
ATTCTCGCGGGCAACGAGCTCCGCAATTCTGGGTACTCCATCCATTTCAC
AGTTCCGGCACGCCGTGGCGGACAACTACTGGTACAACATGTATCTCGAC
GATCTTCCCATCTACGGCAGGGTGGGCCAGGTCAGTCAGTAGTACAGCAG
CCGATGCAGGGGCGCGGCTCGGTGCACCGCGATCGACTTGAGTTGAACGT
GGTGCACTGGACGCCGACGCTGAAGAGTTTCAATGACCGCTTCGACCGCT
ACCTTGACTACTCCTTCTTCGAGCACCAGATCCACTGGTTCTCTATCTTC
AACTCTTTCATGATGGTCATCTTCCTCTGCGGACTTGTCGCCCTTATCCT
TGTCCGCACCCTCCGCAATGACTTCGCCAAGGCGAGCCGACCCTGCAGGC
AATATTGCGGATCATTGCCGTATCTTTCTGGCTTGATTGGCCAAAGCTGC
GGCGGGTACACAAAAGACGAAGACGACTTTGAAGGCGTCGATCGCTCCAT
CGGCGAGGATTCGGGATGGAAACAGGTG
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