mRNA_P-wetherbeei_contig18146.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18146.2.1
Unique NamemRNA_P-wetherbeei_contig18146.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18146.2.1 vs. uniprot
Match: A0A6A8MTL0_9ACTN (Uncharacterized protein n=4 Tax=root TaxID=1 RepID=A0A6A8MTL0_9ACTN)

HSP 1 Score: 120 bits (300), Expect = 1.740e-30
Identity = 60/112 (53.57%), Postives = 75/112 (66.96%), Query Frame = 1
Query:  172 GVVLKKDEVAYGSIQGAALIEPRRTPGQWTGGSKGVSFRIAKGVTYRVGNTRGTYAQGEERPTPVDTGLFVVTNQRCIFIGGKRSTEWAYAKLLGFSLDG-EAVAMFNVSNR 504
            G+VLKK EV  G  + AALIEPRR PG + GG +G SFR+AKGV Y VG +RGTY QG E PT VD G  V+TNQR +F G   + EWA++K+LG + +      +  VSNR
Sbjct:   70 GIVLKKGEVLVGVYEKAALIEPRRQPGHYAGGYQGFSFRLAKGVRYNVGGSRGTYVQGNELPTAVDFGRLVITNQRVVFQGANNAREWAFSKMLGMTHNEVNPTTVMAVSNR 181          
BLAST of mRNA_P-wetherbeei_contig18146.2.1 vs. uniprot
Match: UPI001895AEE3 (hypothetical protein n=1 Tax=Nocardia blacklockiae TaxID=480036 RepID=UPI001895AEE3)

HSP 1 Score: 108 bits (269), Expect = 9.390e-26
Identity = 57/113 (50.44%), Postives = 75/113 (66.37%), Query Frame = 1
Query:  172 GVVLKKDEVAYGSIQGAALIEPRRTPGQWTGGSKGVSFRIAKGVTYRVGNTRGTYAQGEERPTPVDTGLFVVTNQRCIFIGGKRSTEWAYAKLLGFSLD--GEAVAMFNVSNR 504
            GV+LKK E A  +++  ALIEPRR PG +T G  GVS RIA+GV Y VG +RG Y  G E  TP+D+G  V+T  R IF G +++ EW ++KLLG      G+AV + +VSNR
Sbjct:   86 GVLLKKGETALWAVESVALIEPRRHPGTYTRGYSGVSVRIARGVRYHVGGSRGRYIPGPELQTPIDSGQAVITTSRVIFKGFQKTREWHFSKLLGIDTSPAGDAV-LLHVSNR 197          
BLAST of mRNA_P-wetherbeei_contig18146.2.1 vs. uniprot
Match: UPI001F0752E5 (DUF4429 domain-containing protein n=1 Tax=unclassified Streptomyces TaxID=2593676 RepID=UPI001F0752E5)

HSP 1 Score: 108 bits (270), Expect = 4.230e-25
Identity = 73/165 (44.24%), Postives = 99/165 (60.00%), Query Frame = 1
Query:   25 KQAKAAREADRAAAVHQQRIAAKEWEMRQAYDALEASKLTDENGPPRIPG---VVLKKDEVAYGSIQGAALIEPRRTPGQWTGGSKGVSFRIAKGVTYRVGNTRGTYAQGEERPTPVDTGLFVVTNQRCIFIGGKRSTEWAYAKLLGFSL--DGEAVAMFNVSNR 504
            K+ +AAR AD+    +++ +AA  WE  QA      +      G  R+     ++LKK+E A  + Q A+L+EPRR PG ++GGS GVS RIAKGV+YR+G +  +Y  G E  TPVD G  +VT QR +F G K S EW +AKLLG  +  DG  V +  VSNR
Sbjct:  158 KERRAARRADKN---YEKALAA--WEREQALLDEATTAALGAAGASRVIASGLIILKKNEAALWTGQ-ASLVEPRRQPGYYSGGSVGVSLRIAKGVSYRIGASSRSYTPGPEIQTPVDQGSIIVTTQRVVFKGTKASREWVFAKLLGVDIAADGTGV-LLPVSNR 315          
BLAST of mRNA_P-wetherbeei_contig18146.2.1 vs. uniprot
Match: A0A378YS12_9NOCA (Uncharacterized protein n=4 Tax=Nocardia otitidiscaviarum TaxID=1823 RepID=A0A378YS12_9NOCA)

HSP 1 Score: 105 bits (263), Expect = 6.790e-25
Identity = 58/113 (51.33%), Postives = 74/113 (65.49%), Query Frame = 1
Query:  172 GVVLKKDEVAYGSIQGAALIEPRRTPGQWTGGSKGVSFRIAKGVTYRVGNTRGTYAQGEERPTPVDTGLFVVTNQRCIFIGGKRSTEWAYAKLLGF--SLDGEAVAMFNVSNR 504
            GV+LKK E A  + +  ALIEPRR PG ++ G  GVS RIA+GV Y VG +RG Y  G E  TP+D+G  V+T  R +F G K + EW + KLLG   S DG+AV + +VSNR
Sbjct:   83 GVLLKKGESALWAAEAVALIEPRRHPGTYSRGYSGVSVRIARGVRYHVGGSRGRYLPGPELQTPIDSGQAVLTTSRVVFKGFKMTREWRFDKLLGIDTSPDGDAV-LLHVSNR 194          
BLAST of mRNA_P-wetherbeei_contig18146.2.1 vs. uniprot
Match: A0A515Y179_9ACTN (DUF4429 domain-containing protein n=1 Tax=Streptomyces sp. RLB3-6 TaxID=2594457 RepID=A0A515Y179_9ACTN)

HSP 1 Score: 108 bits (270), Expect = 1.810e-24
Identity = 73/165 (44.24%), Postives = 99/165 (60.00%), Query Frame = 1
Query:   25 KQAKAAREADRAAAVHQQRIAAKEWEMRQAYDALEASKLTDENGPPRIPG---VVLKKDEVAYGSIQGAALIEPRRTPGQWTGGSKGVSFRIAKGVTYRVGNTRGTYAQGEERPTPVDTGLFVVTNQRCIFIGGKRSTEWAYAKLLGFSL--DGEAVAMFNVSNR 504
            K+ +AAR AD+    +++ +AA  WE  QA      +      G  R+     ++LKK+E A  + Q A+L+EPRR PG ++GGS GVS RIAKGV+YR+G +  +Y  G E  TPVD G  +VT QR +F G K S EW +AKLLG  +  DG  V +  VSNR
Sbjct:  327 KERRAARRADKN---YEKALAA--WEREQALLDEATTAALGAAGASRVIASGLIILKKNEAALWTGQ-ASLVEPRRQPGYYSGGSVGVSLRIAKGVSYRIGASSRSYTPGPEIQTPVDQGSIIVTTQRVVFKGTKASREWVFAKLLGVDIAADGTGV-LLPVSNR 484          
BLAST of mRNA_P-wetherbeei_contig18146.2.1 vs. uniprot
Match: A0A6I3D2F8_9ACTN (Uncharacterized protein n=4 Tax=root TaxID=1 RepID=A0A6I3D2F8_9ACTN)

HSP 1 Score: 103 bits (256), Expect = 5.600e-24
Identity = 53/111 (47.75%), Postives = 69/111 (62.16%), Query Frame = 1
Query:  175 VVLKKDEVAYGSIQGAALIEPRRTPGQWTGGSKGVSFRI-AKGVTYRVGNTRGTYAQGEERPTPVDTGLFVVTNQRCIFIGGKRSTEWAYAKLLGFSLDGEAVAMFNVSNR 504
            VV+K  E  Y  +  A L+EPR+ PGQW G S+G+S  I    + YRVG ++G++ QGEE PTP+DTG F VT+ R IF G K S EWA++KLL  +          VSNR
Sbjct:   70 VVVKAGESIYCHVTDAVLVEPRKGPGQWKGRSQGISMPIPGTRLRYRVGASKGSFQQGEETPTPIDTGTFTVTSTRAIFAGQKHSREWAWSKLLSVTNYDPGWTAMAVSNR 180          
BLAST of mRNA_P-wetherbeei_contig18146.2.1 vs. uniprot
Match: A0A6J7LGE1_9ZZZZ (Unannotated protein n=2 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J7LGE1_9ZZZZ)

HSP 1 Score: 102 bits (254), Expect = 1.130e-23
Identity = 51/111 (45.95%), Postives = 70/111 (63.06%), Query Frame = 1
Query:  175 VVLKKDEVAYGSIQGAALIEPRRTPGQWTGGSKGVSFRI-AKGVTYRVGNTRGTYAQGEERPTPVDTGLFVVTNQRCIFIGGKRSTEWAYAKLLGFSLDGEAVAMFNVSNR 504
            +V+K  E  Y  +  A L+EP++ PGQW G S+G+S  I    + YRVG ++GT+ QGEE+PTP+DTG F VT+ R IF G K+S EW ++KLL  +          VSNR
Sbjct:   70 IVVKAGESIYCHVTDAVLVEPKKGPGQWNGRSQGLSMPIPGTRLRYRVGASKGTFEQGEEKPTPIDTGTFTVTSTRAIFAGQKQSREWPWSKLLSVTHYDPGWTAMAVSNR 180          
BLAST of mRNA_P-wetherbeei_contig18146.2.1 vs. uniprot
Match: A0A060JJZ0_9MICO (Uncharacterized protein n=3 Tax=Rhodoluna lacicola TaxID=529884 RepID=A0A060JJZ0_9MICO)

HSP 1 Score: 87.0 bits (214), Expect = 6.220e-18
Identity = 51/124 (41.13%), Postives = 72/124 (58.06%), Query Frame = 1
Query:  136 KLTDENGPPRIPGVVLKKDEVAYGSIQGAALIEPRRTPGQWTGGSKGVSFRIAKGVTYRVGNTRGTYAQGEERPTPVDTGLFVVTNQRCIFIGGKRSTEWAYAKLLGFSL-DGEAVAMFNVSNR 504
            K  ++  P  +   +LKK EVA  S+  A L+E R T   + GGS+GVS RIAKG++YRVG  RG   +  +  + +D+G    TNQR +F G   + EWA+ KL+ F+  D     M +VSNR
Sbjct:   49 KKLEDGVPAGLVQTMLKKGEVAIDSVP-AKLLEYRSTGSSYQGGSQGVSIRIAKGLSYRVGANRGQLVRNPDALSVIDSGDATFTNQRVVFGGQAHTREWAFDKLVDFNAGDNGTQVMISVSNR 171          
BLAST of mRNA_P-wetherbeei_contig18146.2.1 vs. uniprot
Match: A0A6I3DWB6_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I3DWB6_9ACTN)

HSP 1 Score: 87.0 bits (214), Expect = 9.590e-18
Identity = 50/123 (40.65%), Postives = 68/123 (55.28%), Query Frame = 1
Query:  139 LTDENGPPRIPGVVLKKDEVAYGSIQGAALIEPRRTPGQWTGGSKGVSFRIAKGVTYRVGNTRGTYAQGEERPTPVDTGLFVVTNQRCIFIGGKRSTEWAYAKLLGFSLDGEAVAM-FNVSNR 504
            L+ E G   IPG   +K E     +  AAL E R T   +  GS+G+SFRIAKGV YRVG ++G   +  E+ T +D G    TN+R  F+G   + EW ++KLL  S+    V +   VSNR
Sbjct:   68 LSQELGNLEIPGFTAEKGETPIYKLSRAALTEFRSTGSSFQSGSQGLSFRIAKGVNYRVGASKGQLLKNPEQLTVIDEGSVTFTNKRIFFVGSNVNREWDFSKLLDVSVGANGVYVNLAVSNR 190          
BLAST of mRNA_P-wetherbeei_contig18146.2.1 vs. uniprot
Match: UPI000AB2B4F5 (DUF4429 domain-containing protein n=1 Tax=Streptomyces sp. WM6378 TaxID=1415557 RepID=UPI000AB2B4F5)

HSP 1 Score: 89.4 bits (220), Expect = 1.090e-17
Identity = 52/111 (46.85%), Postives = 69/111 (62.16%), Query Frame = 1
Query:  178 VLKKDEVAYGSIQGAALIEPRRTPGQWTGGSKGVSFRIAKGVTYRVGNTRGTYAQGEERPTPVDTGLFVVTNQRCIFIGGKRSTEWAYAKLLGF--SLDGEAVAMFNVSNR 504
            +LK +E    + Q  +L+EPRR PG ++GGS GV   IAKGV+ RVG +   Y  G E  TPVD G  +VT QR +F G   S EW ++KLLG   + DG++V +  VSNR
Sbjct:  336 ILKANETVLWTGQ-TSLVEPRRRPGHYSGGSSGVRVGIAKGVSVRVGASSRHYVPGPEVQTPVDRGSAMVTTQRVVFKGTHTSREWTFSKLLGVENATDGKSV-LLPVSNR 444          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18146.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A8MTL0_9ACTN1.740e-3053.57Uncharacterized protein n=4 Tax=root TaxID=1 RepID... [more]
UPI001895AEE39.390e-2650.44hypothetical protein n=1 Tax=Nocardia blacklockiae... [more]
UPI001F0752E54.230e-2544.24DUF4429 domain-containing protein n=1 Tax=unclassi... [more]
A0A378YS12_9NOCA6.790e-2551.33Uncharacterized protein n=4 Tax=Nocardia otitidisc... [more]
A0A515Y179_9ACTN1.810e-2444.24DUF4429 domain-containing protein n=1 Tax=Streptom... [more]
A0A6I3D2F8_9ACTN5.600e-2447.75Uncharacterized protein n=4 Tax=root TaxID=1 RepID... [more]
A0A6J7LGE1_9ZZZZ1.130e-2345.95Unannotated protein n=2 Tax=freshwater metagenome ... [more]
A0A060JJZ0_9MICO6.220e-1841.13Uncharacterized protein n=3 Tax=Rhodoluna lacicola... [more]
A0A6I3DWB6_9ACTN9.590e-1840.65Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
UPI000AB2B4F51.090e-1746.85DUF4429 domain-containing protein n=1 Tax=Streptom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18146contigP-wetherbeei_contig18146:872..1375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1206732.BAGD01000097_gene4148
PFAMsDZR,zinc_ribbon_2
Model size504
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.52e-26
EggNOG OGsCOG1933@1|root,COG1933@2|Bacteria
Descriptionexodeoxyribonuclease I activity
Cds size498
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186137.2516904-UTR-P-wetherbeei_contig18146:871..8771683186137.2516904-UTR-P-wetherbeei_contig18146:871..877Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18146 872..877 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186137.2688692-CDS-P-wetherbeei_contig18146:877..13751683186137.2688692-CDS-P-wetherbeei_contig18146:877..1375Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18146 878..1375 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18146.2.1prot_P-wetherbeei_contig18146.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18146 878..1375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18146.2.1

>prot_P-wetherbeei_contig18146.2.1 ID=prot_P-wetherbeei_contig18146.2.1|Name=mRNA_P-wetherbeei_contig18146.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
MAFEKMKQAKAAREADRAAAVHQQRIAAKEWEMRQAYDALEASKLTDENG
PPRIPGVVLKKDEVAYGSIQGAALIEPRRTPGQWTGGSKGVSFRIAKGVT
YRVGNTRGTYAQGEERPTPVDTGLFVVTNQRCIFIGGKRSTEWAYAKLLG
FSLDGEAVAMFNVSNR
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mRNA from alignment at P-wetherbeei_contig18146:872..1375+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18146.2.1 ID=mRNA_P-wetherbeei_contig18146.2.1|Name=mRNA_P-wetherbeei_contig18146.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig18146:872..1375+ (Phaeothamnion wetherbeei SAG_119_79)
CGGGCGATGGCGTTCGAGAAGATGAAGCAGGCGAAAGCTGCGCGTGAGGC CGACCGAGCAGCGGCAGTCCATCAGCAGCGAATCGCTGCCAAGGAATGGG AGATGCGTCAGGCGTACGACGCGCTAGAGGCGTCGAAGCTCACGGACGAG AACGGTCCGCCGCGCATCCCCGGAGTTGTGTTGAAGAAGGATGAGGTGGC TTACGGATCGATTCAGGGCGCCGCGCTGATCGAGCCGCGCCGCACGCCGG GGCAGTGGACAGGCGGCTCCAAGGGCGTCTCGTTCAGGATCGCTAAGGGC GTGACGTACCGCGTTGGCAATACGCGCGGCACCTACGCGCAGGGTGAGGA GCGCCCTACACCCGTTGATACCGGGTTGTTCGTCGTCACGAACCAGCGAT GCATCTTCATCGGTGGCAAGCGAAGCACTGAATGGGCGTACGCCAAGCTG CTCGGCTTCTCATTGGACGGTGAGGCGGTCGCGATGTTCAACGTGTCGAA CCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18146:872..1375+

>mRNA_P-wetherbeei_contig18146.2.1 ID=mRNA_P-wetherbeei_contig18146.2.1|Name=mRNA_P-wetherbeei_contig18146.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig18146:872..1375+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTTCGAGAAGATGAAGCAGGCGAAAGCTGCGCGTGAGGCCGACCG
AGCAGCGGCAGTCCATCAGCAGCGAATCGCTGCCAAGGAATGGGAGATGC
GTCAGGCGTACGACGCGCTAGAGGCGTCGAAGCTCACGGACGAGAACGGT
CCGCCGCGCATCCCCGGAGTTGTGTTGAAGAAGGATGAGGTGGCTTACGG
ATCGATTCAGGGCGCCGCGCTGATCGAGCCGCGCCGCACGCCGGGGCAGT
GGACAGGCGGCTCCAAGGGCGTCTCGTTCAGGATCGCTAAGGGCGTGACG
TACCGCGTTGGCAATACGCGCGGCACCTACGCGCAGGGTGAGGAGCGCCC
TACACCCGTTGATACCGGGTTGTTCGTCGTCACGAACCAGCGATGCATCT
TCATCGGTGGCAAGCGAAGCACTGAATGGGCGTACGCCAAGCTGCTCGGC
TTCTCATTGGACGGTGAGGCGGTCGCGATGTTCAACGTGTCGAACCGC
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