mRNA_P-wetherbeei_contig1814.3.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1814.3.3
Unique NamemRNA_P-wetherbeei_contig1814.3.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1814.3.3 vs. uniprot
Match: D8LAU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU0_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 7.660e-55
Identity = 114/312 (36.54%), Postives = 153/312 (49.04%), Query Frame = 3
Query:  261 IKHIRVVGERHSGTTFITKLLEKMFVADPDIDVSARLCNWKHWFQTRIHEAVIIGNRRCNEIMPCAECVHPEQTLVIIVWRNPYDWVTSMFGQPHHAISHYGIA-FHEFLRKSWTLDPAANNASAAIAAASSAAERERINAPRISTERRCIDNFISDQEVIPCLPSERRAIYELNESGEPFPNIYSLRLAKIADFAAIAKWAPHYEVIHYDETLLRGGATAVTRWLDKIADRVGAERSGARSRKILTTKTLSLLSSMSKSSIYLNGGCSKDRDRRRAAPTAPCLFQCDPRSLEALHTMWDEEAEASIGYHKM 1193
            I++I VV ERHSG+ + T  L + F  D D+ V+  LC WKHWFQ RIH+ V  G R C     C  C+  E TLV+++WRNPYDW++ M   PHHA +H G+    +F+   W + P                            E  CIDNF+ + EV+PC  ++R +IYEL+  G  + NIY LR AKI DF A+  W P YE + Y++ L+  G     R L+     VG          +L T    L  +M     Y N            AP           ++EALH MWDEE E+ IGYHK+
Sbjct:   42 IRYISVVAERHSGSRWFTGFLREYF-RDKDVMVTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWISGMHSNPHHAKAHRGVQDLEQFMTMPWIMGP----------------------------ELPCIDNFLPN-EVLPCKENDRSSIYELDRDGRAYGNIYELRKAKILDFNAVETWVPFYEKVVYEDMLVGPGLRDWLRSLETKYGLVGNYMDVP--DNVLQTNMARLWRNM----YYTNS--------EHCAPNCTMGGVTGATAVEALHQMWDEELESGIGYHKV 309          
BLAST of mRNA_P-wetherbeei_contig1814.3.3 vs. uniprot
Match: A0A6H5LNE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNE9_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 1.500e-54
Identity = 116/313 (37.06%), Postives = 161/313 (51.44%), Query Frame = 3
Query:  261 IKHIRVVGERHSGTTFITKLLEKMFVADPDIDVSARLCNWKHWFQTRIHEAVIIGNRRCNEIMPCAECVHPEQTLVIIVWRNPYDWVTSMFGQPHHAISHYGIA-FHEFLRKSWTLDPAANNASAAIAAASSAAERERINAPRISTERRCIDNFISDQEVIPCLPSERRAIYELNESGEPFPNIYSLRLAKIADFAAIAKWAPHYEVIHYDETLLRGGATAVTRWLDKIADRVGAERSGARSRKILTTKTLSLLSSMSKSSIYLNGGCSKDRDRRRAAPTAPCLFQCDPRSLEALHTMWDEEAEASIGYHKMK 1196
            IK+I ++GERHSGTT++ K L+  F  D DI V+A LC WKHWFQ RI++ +  G R C E   C  C     TLV+ +WRNPYDWV+ M   P HA +H  I    +F+   W +           A     A +E +   R   E  CIDNF+   EV+PC P +  AIYEL+  GE + NIY LR AKI DF A+  WAP+YE I Y++ L + G   +  WL  +    G    G   + +  +     + S  K   Y+N         +  AP           +LE ++ +WDEE E  +GYH+++
Sbjct:  100 IKYISLIGERHSGTTWMVKFLQDYF-RDKDITVTATLCTWKHWFQDRIYQDIQDGKRLCREGQQCPACKDINHTLVVAMWRNPYDWVSGMHKIPWHAQAHASIPDMSKFMTMPWIMG----------AEEEKQARKEALI--RTKDELPCIDNFLP-WEVLPCRPGDESAIYELDPGGEAYGNIYELRKAKIRDFDAVKMWAPYYEKILYEDMLAKDG---LKMWLMSLDTLYGL---GGNYKSVPDSALAVKMESSRKQMYYMNS--------QHCAPHCKMGGVAGRSALETMNRLWDEELEEDLGYHQVR 384          
BLAST of mRNA_P-wetherbeei_contig1814.3.3 vs. uniprot
Match: D8LAT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAT9_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 6.350e-54
Identity = 115/312 (36.86%), Postives = 153/312 (49.04%), Query Frame = 3
Query:  261 IKHIRVVGERHSGTTFITKLLEKMFVADPDIDVSARLCNWKHWFQTRIHEAVIIGNRRCNEIMPCAECVHPEQTLVIIVWRNPYDWVTSMFGQPHHAISHYGIA-FHEFLRKSWTLDPAANNASAAIAAASSAAERERINAPRISTERRCIDNFISDQEVIPCLPSERRAIYELNESGEPFPNIYSLRLAKIADFAAIAKWAPHYEVIHYDETLLRGGATAVTRWLDKIADRVGAERSGARSRKILTTKTLSLLSSMSKSSIYLNGGCSKDRDRRRAAPTAPCLFQCDPRSLEALHTMWDEEAEASIGYHKM 1193
            I++I VV ERHSG T++T  L + F  D D+ V+  LC WKHWFQ RIH+ V  G R C     C  C+  E TLV+++WRNPYDW+  M   PHHA +H G+    +F+   W + P                            E  CIDNF+ + EV+PC  + R +IYEL+  G  + NIY LR AKI DF A+  W P YE + Y++ L+  G     R L+     VG          +L T    L S+M     Y N            AP           ++EALH MWDEE E+ IGY+K+
Sbjct:   45 IRYISVVSERHSGFTWMTSFLWEYF-RDKDVMVTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWIGGMHSNPHHAKAHRGVQDLEQFMTMPWIMGP----------------------------ELPCIDNFLPN-EVLPCKENGRSSIYELDRDGRAYGNIYELRKAKILDFNAVETWVPFYEKVVYEDMLVGPGLRDWLRSLETKYGLVGNYMDVP--DNVLQTNMARLWSNM----YYTNS--------EHCAPNCTMGGVTGATAVEALHQMWDEELESGIGYNKV 312          
BLAST of mRNA_P-wetherbeei_contig1814.3.3 vs. uniprot
Match: A0A7S3UU09_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UU09_HETAK)

HSP 1 Score: 145 bits (367), Expect = 7.270e-36
Identity = 105/325 (32.31%), Postives = 161/325 (49.54%), Query Frame = 3
Query:  261 IKHIRVVGERHSGTTFITKLLEKMFVADPDIDVSARLCNWKHWFQTRIHEAVIIGNRRCNEIMPCAECVHPEQTLVIIVWRNPYDWVTSMFGQPHHAISH--YG----IAFHEFLRKSWTLDPAANNASAAIAAASSAAERERINAPRISTERRCIDNFISDQEVIPCLPSERRAIYELNESGEPFPN----IYS----LRLAKIADFAAIAKWAPHYEVIHYDETLLRGGATAVTRWLDKIADRVGAERSGARSRK-ILTTKTLSLLSSMSKSSIYLNGGCSKDRDRRRAAPTAPCLFQCDPRSLEALHTMWDEEAEASIGYHK 1190
            I+ I ++ ERHSG+T++ K+L++ F   P + V   +C +KHWFQ R  E  I G R C++   C  C++PE T++  +WRNPYDW+ ++   P H+ISH  Y     I F  F+ K W +   A               ++ + AP       C+DNF  +     C  S+  AIYE   +G+P  N     Y+    +R AKI DF ++ KWAP++  + Y E LL GG   +  + D +A R        + R+ +L T    LLS+      Y +GG      +      A C    +P +L+A+ +  D +AE  +GYHK
Sbjct:   64 IRRIALIAERHSGSTWLFKVLQEAF---PGVQVQQSVCMYKHWFQDRHREETISGKRGCSKGY-CFPCLNPESTIIFNLWRNPYDWIVALNEIPWHSISHGYYSKKGHIDFIAFVNKEWKVHGPARQYMLKKQG------KKALQAP-------CLDNFQKNDLDFVC--SKASAIYETT-AGDPHYNGTQSYYAGPLEMRAAKIRDFMSVGKWAPNFYTVTY-EALLFGGYDGLRDYFDAVAQRHNLTHHPEKYRELVLPTSRNKLLSTF-----YGSGG-----KKCNQKILAKCPLIANPAALQAVQSKIDHQAERLLGYHK 357          
BLAST of mRNA_P-wetherbeei_contig1814.3.3 vs. uniprot
Match: D7FTA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA1_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 2.390e-28
Identity = 75/234 (32.05%), Postives = 103/234 (44.02%), Query Frame = 3
Query:  261 IKHIRVVGERHSGTTFITKLLEKMFVADPDIDVSARLCNWKHWFQTRIHEAVIIGNRRCNEIMPCAECVHPEQTLVIIVWRNPYDWVTSMFGQPHHAISHYGIA-FHEFLRKSWTLDPAANNASAAIAAASSAAERERINAPRISTERRCIDNFISDQEVIPCLPSERRAIYELNESGEPFPNIYSLRLAKIADFAAIAKWAPHYEVIHYDETLLRGGATAVTRWLDKIADRVG 959
            IK+I ++ ERHSG+T++T  L + F    D+ V+  LC WKHWFQ RIH+ +  G R C E   C  C+  E TLV+ +WRNPYDW++ M   PHHA +H G+    E++   W + P                          + ER   D  I  +E                              AKI DF A+  W P YE I  DE +L G    +  WL  +  + G
Sbjct:   26 IKYISLIAERHSGSTWMTGFLSRYF-RHSDVKVTPTLCTWKHWFQDRIHQDIQDGKRPCREHQQCPACLDTEHTLVVAMWRNPYDWISGMQSNPHHAKAHRGVQDLSEYMTMPWIMQPK-------------------------NEERARKDALIKAKEE-----------------------------AKILDFNAVETWVPFYEKIA-DEDMLDG--ETLGDWLRSLETKYG 201          
BLAST of mRNA_P-wetherbeei_contig1814.3.3 vs. uniprot
Match: D8LB15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB15_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 4.800e-26
Identity = 53/116 (45.69%), Postives = 71/116 (61.21%), Query Frame = 3
Query:  261 IKHIRVVGERHSGTTFITKLLEKMFVADPDIDVSARLCNWKHWFQTRIHEAVIIGNRRCNEIMPCAECVHPEQTLVIIVWRNPYDWVTSMFGQPHHAISHYGIA-FHEFLRKSWTL 605
            IK+I ++GERHSGTT++ K L+  F  D DI V+A LC WKHWFQ RI++ +  G R C E   C  C     TLV+ +WRNPYDW++ M   P HA +H  I    +F+   W +
Sbjct:   10 IKYISLIGERHSGTTWMVKFLQDYF-RDKDITVTATLCTWKHWFQDRIYQDIHDGKRPCREGQQCPACKDINHTLVVAMWRNPYDWISGMHKIPWHAQAHASIPDMSKFMTMPWIM 124          
BLAST of mRNA_P-wetherbeei_contig1814.3.3 vs. uniprot
Match: A0A7S2K8J0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K8J0_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.670e-19
Identity = 73/241 (30.29%), Postives = 110/241 (45.64%), Query Frame = 3
Query:  270 IRVVGERHSGTTFITKLLEKMFVADPDIDVSARLCNWKHWFQTRIHEAVIIGNRRCNEIMPCAECVHPEQTLVIIVWRNPYDWVTSMFGQPHHAISHYGIAFHEFLRKSWTLDPAANNASAAIAAASSAAERERINAPRISTERRCIDNFISDQEVIPCLPSERRAI-------------------YELNE--SGEPFPNIYSLRLAKIADFAAIAKW--APHYEVIHYDETLLRGGATAV 923
            I ++GERHSGTT++T  L+K F   P +D+  +L  WKHWFQ +                   +  + + T+VI  +RN YDW  +M   PHH+  H  + + EF+ K WT+   A +            +++ I         RC +NF  D E++ C+   R +                    YEL    SG P+ NI  +R  KI +F A++KW    H+  I Y ETL+  G  A+
Sbjct:  127 ISLIGERHSGTTWMTNELQKCF---PTLDIKPKLVRWKHWFQDK----------------RIVDAKNQKPTMVIAQFRNIYDWTEAMRQGPHHSPYHLRLGWEEFVTKPWTMPRPARDLDIK--------DKKTI---------RCQENFGYD-EIVSCVRGRRVSFPNQKVREQSLTNYSGHNPQYELRNDGSGLPYSNIIEMRSDKIRNFLAVSKWNWVKHFLAIKY-ETLVTEGTGAL 329          
BLAST of mRNA_P-wetherbeei_contig1814.3.3 vs. uniprot
Match: A0A7S0G6T5_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G6T5_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.730e-19
Identity = 75/238 (31.51%), Postives = 115/238 (48.32%), Query Frame = 3
Query:  261 IKHIRVVGERHSGTTFITKLLEKMFVADPDIDVSARLCNWKHWFQTRIHEAVIIGNRRCNEIMPCAECVHPEQTLVIIVWRNPYDWVTSMFGQPHHAISHYGIAFHEFLRKSWTLDPAANNASAAIAAASSAAERERINAPRISTERRCIDNFISDQEVIPCLPSER------RAIYELNE--SGEPFPNIYSLRLAKIADFAAIAKWA--PHYEVIHYDETLLRGGATAVTRWLDKI 944
            +  I ++GER++GT ++T LL K F   P I  SARL  WKHWFQ          +   NE          ++TLVI ++RNPY+WV +M   PHH+ SH  + +  F+ K WT+    ++    +  ++S  +        I  E+    + IS Q   P L S        + IYE+    SG+PF NI  +R AKI +   + +W       V+ Y++ LL  G     + L+K+
Sbjct:   56 VMEISLLGERNTGTNWVTALLSKCF---PGIKTSARLVRWKHWFQD--------DDSNENE---------RQKTLVIAMFRNPYEWVMAMRKTPHHSPSHLRLKWQNFVTKPWTMTRPESD----LVFSNSTGQ--------ICHEKFAYKDVISCQRQPPELMSSTGGYSSGKPIYEMRHDGSGKPFANILEMRAAKIHNHLGVQEWPWISGVHVVRYED-LLEDGTGNFIKNLEKL 260          
BLAST of mRNA_P-wetherbeei_contig1814.3.3 vs. uniprot
Match: A0A7S2E1N5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E1N5_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 4.570e-17
Identity = 75/262 (28.63%), Postives = 115/262 (43.89%), Query Frame = 3
Query:  249 DIRAIKHIRVVGERHSGTTFITKLLEKMFVADPDIDVSARLCNWKHWFQTRIHEAVIIGNRRCNEIMPCAECVHPEQTLVIIVWRNPYDWVTSMFGQPHHAISHYGIAFHEFLRKSWTLDPAANNASAAIAAASSAAERERINAPRISTERR---CIDNFISDQEVIPCLP---------------SERRAIYELNE--SGEPFPNIYSLRLAKIADFAAIA--KWAPHYEVIHYDETLLRGGATAVTRWLDKIADRVGAER 968
            D+ A+  + ++GER SGTT+I + L + F     + +  RL  +KHWFQ          +   ++        +P  +LVI ++RNPYDW T+M   PHHA +H  + + EFL K+WT                     ER+      T++    C D F    EV+ C+                SE + +YE+    SGEP+ NI  +R  KI +F  +   K    + V  Y++ L  G       +L KI    G +R
Sbjct:   53 DVTAVS-VAILGERSSGTTWIYEHLTECFAHG--VPIRRRLEKYKHWFQV---------DEERDDYKGLDFETYPTNSLVISMFRNPYDWTTAMHRVPHHAPAHIDLPWKEFLTKAWTT--------------------ERVGKDLNITDKENFLCQDKF-KYHEVVSCIHKPMGDEYWKDKKTRFSEHQPVYEMKNDGSGEPYDNILDMRADKIRNFLTVKDFKRITDFWVYKYEDLLADG----TEEFLQKIEKATGVKR 277          
BLAST of mRNA_P-wetherbeei_contig1814.3.3 vs. uniprot
Match: A0A7S1VY01_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1VY01_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.530e-16
Identity = 75/255 (29.41%), Postives = 114/255 (44.71%), Query Frame = 3
Query:  270 IRVVGERHSGTTFITKLLEKMFVADPDIDVSARLCNWKHWFQTRIHEAVIIGNRRCNEIMPCAECVHPEQTLVIIVWRNPYDWVTSMFGQPHHAISHYGIAFHEFLRKSWTLDPAANNASAAIAAASSAAERERINAPRISTERR---CIDNFISDQEVIPCLP---------------SERRAIYELNE--SGEPFPNIYSLRLAKIADFAAIA--KWAPHYEVIHYDETLLRGGATAVTRWLDKIADRVGAER 968
            + ++GER SGTT+I + L + F  +  + +  RL  +KHWFQ                     +  +P  +LVI ++RNPYDW+ +M   PHH+ SH  +++ EFL K+WT                     ER+      T+ +   C +NF    EV+ C+                SE + +YEL    SGEP+ NI  LR AK  +F  +   K    + V  Y E+LL+ G     R   +I +  G +R
Sbjct:  191 VAILGERSSGTTWIYEHLTECF--NHSVPIKRRLNRYKHWFQE--------------------DSNYPSNSLVIAIFRNPYDWMEAMHRVPHHSPSHMDLSWKEFLTKTWTT--------------------ERVGHDLNITDTKSVVCQENF-QYHEVVSCIHKPMGQEYWEGKKTRFSEHQPVYELKHDGSGEPYDNIMELRAAKNVNFMEVKDFKRITDFWVYKY-ESLLKEGTEDFLR---RIEEATGVKR 398          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1814.3.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAU0_ECTSI7.660e-5536.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LNE9_9PHAE1.500e-5437.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LAT9_ECTSI6.350e-5436.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3UU09_HETAK7.270e-3632.31Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
D7FTA1_ECTSI2.390e-2832.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LB15_ECTSI4.800e-2645.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2K8J0_9STRA1.670e-1930.29Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S0G6T5_9STRA2.730e-1931.51Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2E1N5_9STRA4.570e-1728.63Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S1VY01_9STRA1.530e-1629.41Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1814contigP-wetherbeei_contig1814:2026..4060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LAU0
Model size1412
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons5
Evalue3.21e-56
EggNOG OGs2EKXM@1|root,2SQQN@2759|Eukaryota
Cds size1248
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1814.3.3prot_P-wetherbeei_contig1814.3.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1814 2118..3988 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186137.0151563-UTR-P-wetherbeei_contig1814:2025..21171683186137.0151563-UTR-P-wetherbeei_contig1814:2025..2117Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1814 2026..2117 +
1683186137.0966775-UTR-P-wetherbeei_contig1814:3988..40601683186137.0966775-UTR-P-wetherbeei_contig1814:3988..4060Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1814 3989..4060 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186137.026331-CDS-P-wetherbeei_contig1814:2117..24081683186137.026331-CDS-P-wetherbeei_contig1814:2117..2408Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1814 2118..2408 +
1683186137.0363464-CDS-P-wetherbeei_contig1814:2544..26541683186137.0363464-CDS-P-wetherbeei_contig1814:2544..2654Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1814 2545..2654 +
1683186137.0462303-CDS-P-wetherbeei_contig1814:2805..29261683186137.0462303-CDS-P-wetherbeei_contig1814:2805..2926Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1814 2806..2926 +
1683186137.0651143-CDS-P-wetherbeei_contig1814:3067..33281683186137.0651143-CDS-P-wetherbeei_contig1814:3067..3328Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1814 3068..3328 +
1683186137.0822306-CDS-P-wetherbeei_contig1814:3523..39881683186137.0822306-CDS-P-wetherbeei_contig1814:3523..3988Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1814 3524..3988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1814.3.3

>prot_P-wetherbeei_contig1814.3.3 ID=prot_P-wetherbeei_contig1814.3.3|Name=mRNA_P-wetherbeei_contig1814.3.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=416bp
MSPLWSEARQSWNCRRLVGVVNLLLLLALLWLYLAQRWPYPQEKKQKQSK
AIDIRAIKHIRVVGERHSGTTFITKLLEKMFVADPDIDVSARLCNWKHWF
QTRIHEAVIIGNRRCNEIMPCAECVHPEQTLVIIVWRNPYDWVTSMFGQP
HHAISHYGIAFHEFLRKSWTLDPAANNASAAIAAASSAAERERINAPRIS
TERRCIDNFISDQEVIPCLPSERRAIYELNESGEPFPNIYSLRLAKIADF
AAIAKWAPHYEVIHYDETLLRGGATAVTRWLDKIADRVGAERSGARSRKI
LTTKTLSLLSSMSKSSIYLNGGCSKDRDRRRAAPTAPCLFQCDPRSLEAL
HTMWDEEAEASIGYHKMKSLALPAAPGCVPPRNVAAPEPIPPGWKPPPPG
TRGPRRRWPKGQVKT*
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mRNA from alignment at P-wetherbeei_contig1814:2026..4060+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1814.3.3 ID=mRNA_P-wetherbeei_contig1814.3.3|Name=mRNA_P-wetherbeei_contig1814.3.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2035bp|location=Sequence derived from alignment at P-wetherbeei_contig1814:2026..4060+ (Phaeothamnion wetherbeei SAG_119_79)
CCTTGTTCACGCCTTGCTCTGCGACGGGAACGCAAGAACGCCTAGCCGCA TGAAAGCGAATCTGGTTGATCTCATGCGAAGAATCTGACCTAATGTCTCC ACTTTGGTCAGAAGCGAGACAAAGTTGGAATTGTCGAAGACTCGTCGGGG TCGTCAACCTTTTGTTGCTTCTTGCGCTTCTCTGGCTCTATCTCGCACAG CGGTGGCCGTATCCGCAAGAGAAGAAGCAAAAGCAGTCGAAAGCAATTGA CATTCGTGCCATCAAGCACATCAGGGTTGTGGGCGAGAGGCATTCGGGGA CGACGTTCATAACGAAGCTCCTGGAAAAGATGTTCGTGGCGGACCCTGAC ATTGACGTGAGCGCCCGCTTGTGTAATTGGAAGGTGAGATTCCATTAAGG CCTCTCCGTGAATTTAGTATGTATACCCCTTGAAGACCAATATTTCCATA CTTTCCCCTATTTCCACCGCCACTGCGCTCTCTATTTTCGAACGGTTGCG CTCCCTCTCTTCGCTCCAGCACTGGTTCCAAACGAGGATCCATGAAGCTG TCATCATTGGCAACCGTCGGTGCAACGAAATCATGCCGTGCGCGGAATGC GTCCATCCCGAGCAGACGCTCGTCATAATGTGAGACTAGCTCCTTCTCAT CGTGTTGCCTCGTTTTCCTTCGCAGTCATAAACAAACCTTTTAATCGCCG CATTCTGCTTTCCAACCTGGCAACGGTATGACTCCTCCACCAATTCAGTC CACGGCTCCTTCCTCCCTCTTCTTACGCAGAGTTTGGCGGAATCCTTATG ACTGGGTTACTTCGATGTTTGGCCAGCCGCACCACGCCATTTCCCATTAT GGGATCGCCTTCCATGAGTTTTTGCGCAAATCGTGGACCCTTGATCCAGC GGTGAGAGTCGTCCATCCTCGCAAATAGGTAGCGTCGGCACCGGTCCATG TCTCTACACGCCATCGACACGCAGCTCTCGTTTTGGGAGGTAATATATAG CCTCAAGCAGCCTCTTGCGCAAACGCTTCTTTATCCTCGCAGGCAAACAA CGCCTCGGCCGCGATCGCAGCAGCATCAAGCGCCGCGGAAAGGGAGCGCA TCAACGCTCCTCGTATATCTACGGAGCGGCGGTGCATCGATAATTTCATT TCTGATCAGGAAGTGATCCCGTGCCTTCCGTCCGAGCGGCGTGCAATTTA CGAGCTCAATGAAAGCGGGGAGCCCTTTCCCAATATTTACTCGTTGAGAT TGGCGAAAATCGCCGATTTCGCCGCCATCGCGAAGTGGGCGCCGCATTAC GAGGTGAGGCTTTTCCCGCAGGGCATTCTCTCACTGCGTGTCTTTTTGTT ATGCGGGCAAGAAATGTTTCAAGAATGGTATTGCCTGGCTGCGCCTGCAG GAGCGTCAAAGTTAGGCGTGTTTTATCCCGCGTGTTATGACACGAAATGT TTTCCACTTTGAACGCAATTGCTCGTGCTTCCCCGCGTCCCAATGCAGGT GATCCATTATGATGAAACCTTGCTGCGGGGCGGCGCGACAGCCGTGACTA GGTGGCTCGATAAGATCGCCGACCGCGTCGGCGCCGAGCGGAGCGGCGCC CGCAGCCGGAAAATCCTCACCACCAAGACTTTATCATTACTCTCATCCAT GTCCAAGAGCAGCATTTACCTGAATGGCGGCTGCAGCAAAGATCGCGACC GGCGGCGGGCGGCGCCGACCGCCCCGTGCCTCTTCCAGTGCGACCCGCGG TCGCTGGAGGCGTTGCACACAATGTGGGATGAGGAGGCCGAAGCGAGTAT CGGATACCATAAAATGAAGAGTTTGGCGCTGCCGGCGGCACCGGGGTGCG TGCCGCCAAGGAATGTCGCTGCGCCGGAGCCCATACCACCCGGGTGGAAG CCGCCGCCGCCCGGCACGCGGGGGCCGCGACGACGCTGGCCAAAAGGTCA GGTGAAAACGTAAGATTGTGTTTAACATCGCTGGTGCGTGCGAAGAGCAA ATCACCCCATGTTTAAGGCAACAACACTTGCTCGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1814:2026..4060+

>mRNA_P-wetherbeei_contig1814.3.3 ID=mRNA_P-wetherbeei_contig1814.3.3|Name=mRNA_P-wetherbeei_contig1814.3.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1248bp|location=Sequence derived from alignment at P-wetherbeei_contig1814:2026..4060+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTCCACTTTGGTCAGAAGCGAGACAAAGTTGGAATTGTCGAAGACT
CGTCGGGGTCGTCAACCTTTTGTTGCTTCTTGCGCTTCTCTGGCTCTATC
TCGCACAGCGGTGGCCGTATCCGCAAGAGAAGAAGCAAAAGCAGTCGAAA
GCAATTGACATTCGTGCCATCAAGCACATCAGGGTTGTGGGCGAGAGGCA
TTCGGGGACGACGTTCATAACGAAGCTCCTGGAAAAGATGTTCGTGGCGG
ACCCTGACATTGACGTGAGCGCCCGCTTGTGTAATTGGAAGCACTGGTTC
CAAACGAGGATCCATGAAGCTGTCATCATTGGCAACCGTCGGTGCAACGA
AATCATGCCGTGCGCGGAATGCGTCCATCCCGAGCAGACGCTCGTCATAA
TAGTTTGGCGGAATCCTTATGACTGGGTTACTTCGATGTTTGGCCAGCCG
CACCACGCCATTTCCCATTATGGGATCGCCTTCCATGAGTTTTTGCGCAA
ATCGTGGACCCTTGATCCAGCGGCAAACAACGCCTCGGCCGCGATCGCAG
CAGCATCAAGCGCCGCGGAAAGGGAGCGCATCAACGCTCCTCGTATATCT
ACGGAGCGGCGGTGCATCGATAATTTCATTTCTGATCAGGAAGTGATCCC
GTGCCTTCCGTCCGAGCGGCGTGCAATTTACGAGCTCAATGAAAGCGGGG
AGCCCTTTCCCAATATTTACTCGTTGAGATTGGCGAAAATCGCCGATTTC
GCCGCCATCGCGAAGTGGGCGCCGCATTACGAGGTGATCCATTATGATGA
AACCTTGCTGCGGGGCGGCGCGACAGCCGTGACTAGGTGGCTCGATAAGA
TCGCCGACCGCGTCGGCGCCGAGCGGAGCGGCGCCCGCAGCCGGAAAATC
CTCACCACCAAGACTTTATCATTACTCTCATCCATGTCCAAGAGCAGCAT
TTACCTGAATGGCGGCTGCAGCAAAGATCGCGACCGGCGGCGGGCGGCGC
CGACCGCCCCGTGCCTCTTCCAGTGCGACCCGCGGTCGCTGGAGGCGTTG
CACACAATGTGGGATGAGGAGGCCGAAGCGAGTATCGGATACCATAAAAT
GAAGAGTTTGGCGCTGCCGGCGGCACCGGGGTGCGTGCCGCCAAGGAATG
TCGCTGCGCCGGAGCCCATACCACCCGGGTGGAAGCCGCCGCCGCCCGGC
ACGCGGGGGCCGCGACGACGCTGGCCAAAAGGTCAGGTGAAAACGTAA
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