mRNA_P-wetherbeei_contig18135.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18135.1.1
Unique NamemRNA_P-wetherbeei_contig18135.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18135.1.1 vs. uniprot
Match: A0A835YJQ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJQ5_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 8.410e-13
Identity = 34/42 (80.95%), Postives = 41/42 (97.62%), Query Frame = 1
Query:    1 QIYSAKLKLHPIVVLSVLYVTEHVVGVQGLILAVPVSVFLMN 126
            QIYSAKLKLHPI +L+VLY+TEHVVGVQGLI+AVPV+VF++N
Sbjct:  433 QIYSAKLKLHPITILAVLYMTEHVVGVQGLIVAVPVAVFVLN 474          
BLAST of mRNA_P-wetherbeei_contig18135.1.1 vs. uniprot
Match: A0A6H5JKX4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKX4_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 9.140e-11
Identity = 30/42 (71.43%), Postives = 39/42 (92.86%), Query Frame = 1
Query:    1 QIYSAKLKLHPIVVLSVLYVTEHVVGVQGLILAVPVSVFLMN 126
            QIY++KLKLHP+VV+ VLYV EH+VGVQGLI+AVP +VF++N
Sbjct:  514 QIYASKLKLHPVVVIGVLYVAEHLVGVQGLIMAVPCAVFVIN 555          
BLAST of mRNA_P-wetherbeei_contig18135.1.1 vs. uniprot
Match: A0A1X6NW72_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NW72_PORUM)

HSP 1 Score: 60.1 bits (144), Expect = 2.850e-9
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 1
Query:    1 QIYSAKLKLHPIVVLSVLYVTEHVVGVQGLILAVPVSVFLMNFLLAP 141
            QIYSA L LHPI+VL VLYV EH+ GV GL+LAVPV+VFL+  L  P
Sbjct:  474 QIYSAHLHLHPILVLVVLYVAEHMYGVPGLLLAVPVTVFLLRQLAVP 520          
BLAST of mRNA_P-wetherbeei_contig18135.1.1 vs. uniprot
Match: L1IWD8_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IWD8_GUITC)

HSP 1 Score: 58.5 bits (140), Expect = 9.820e-9
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = 1
Query:    1 QIYSAKLKLHPIVVLSVLYVTEHVVGVQGLILAVPVSVFLMNFLL 135
            QIYS+KLKLHP++VL  LYVTEHV G+  L LAVP++VF++  LL
Sbjct:  322 QIYSSKLKLHPLLVLIALYVTEHVFGIGALFLAVPITVFVIKVLL 366          
BLAST of mRNA_P-wetherbeei_contig18135.1.1 vs. uniprot
Match: A0A7S4V1E5_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4V1E5_GUITH)

HSP 1 Score: 58.5 bits (140), Expect = 9.950e-9
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = 1
Query:    1 QIYSAKLKLHPIVVLSVLYVTEHVVGVQGLILAVPVSVFLMNFLL 135
            QIYS+KLKLHP++VL  LYVTEHV G+  L LAVP++VF++  LL
Sbjct:  507 QIYSSKLKLHPLLVLIALYVTEHVFGIGALFLAVPITVFVIKVLL 551          
BLAST of mRNA_P-wetherbeei_contig18135.1.1 vs. uniprot
Match: A0A250XBB3_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XBB3_9CHLO)

HSP 1 Score: 58.2 bits (139), Expect = 1.360e-8
Identity = 28/48 (58.33%), Postives = 40/48 (83.33%), Query Frame = 1
Query:    4 IYSAKLKLHPIVVLSVLYVTEHVVGVQGLILAVPVSVFLMNFLLAPPQ 147
            IYSA LKLHP++VLSVL V EH +GV GL+LAVP++VF++++ +  P+
Sbjct:  474 IYSAHLKLHPLLVLSVLVVAEHSIGVWGLLLAVPLTVFMLDYCIRYPE 521          
BLAST of mRNA_P-wetherbeei_contig18135.1.1 vs. uniprot
Match: A0A2P6V889_9CHLO (UPF0118 membrane n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V889_9CHLO)

HSP 1 Score: 56.6 bits (135), Expect = 4.770e-8
Identity = 28/48 (58.33%), Postives = 40/48 (83.33%), Query Frame = 1
Query:    4 IYSAKLKLHPIVVLSVLYVTEHVVGVQGLILAVPVSVFLMNFLLAPPQ 147
            IYSA LKLHP++VL+VL V EH +GV GL+LAVP++VF ++++L  P+
Sbjct:  430 IYSAHLKLHPLLVLTVLVVAEHSLGVWGLLLAVPLTVFALDYVLRYPE 477          
BLAST of mRNA_P-wetherbeei_contig18135.1.1 vs. uniprot
Match: A0A2P6THL8_CHLSO (UPF0118 membrane n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6THL8_CHLSO)

HSP 1 Score: 56.6 bits (135), Expect = 4.770e-8
Identity = 28/48 (58.33%), Postives = 40/48 (83.33%), Query Frame = 1
Query:    4 IYSAKLKLHPIVVLSVLYVTEHVVGVQGLILAVPVSVFLMNFLLAPPQ 147
            IYSA LKLHP++VL+VL V EH +GV GL+LAVP++VF ++++L  P+
Sbjct:  336 IYSAHLKLHPLLVLTVLVVAEHSLGVWGLLLAVPLTVFTLDYVLRYPE 383          
BLAST of mRNA_P-wetherbeei_contig18135.1.1 vs. uniprot
Match: A0A7C5D3T1_9BACT (AI-2E family transporter n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A7C5D3T1_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 5.490e-8
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 1
Query:    4 IYSAKLKLHPIVVLSVLYVTEHVVGVQGLILAVPVSVFLMNFLLAPPQ 147
            IYSA LKLHP++VL+VL V EH +GV GL+LAVP+SVF +++ +  P 
Sbjct:   97 IYSAHLKLHPLLVLAVLVVAEHSLGVWGLLLAVPLSVFALDYCIYYPS 144          
BLAST of mRNA_P-wetherbeei_contig18135.1.1 vs. uniprot
Match: D8TRM2_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TRM2_VOLCA)

HSP 1 Score: 55.8 bits (133), Expect = 6.620e-8
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 1
Query:    4 IYSAKLKLHPIVVLSVLYVTEHVVGVQGLILAVPVSVFLMNFLLAPPQ 147
            IYSA LKLHP++VLSVL V EH +GV GL+LAVP +VF +++L+  P 
Sbjct:  164 IYSAHLKLHPLMVLSVLLVAEHNLGVWGLLLAVPSTVFALDYLIRYPN 211          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18135.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YJQ5_9STRA8.410e-1380.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JKX4_9PHAE9.140e-1171.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1X6NW72_PORUM2.850e-968.09Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
L1IWD8_GUITC9.820e-964.44Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S4V1E5_GUITH9.950e-964.44Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A250XBB3_9CHLO1.360e-858.33Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A2P6V889_9CHLO4.770e-858.33UPF0118 membrane n=1 Tax=Micractinium conductrix T... [more]
A0A2P6THL8_CHLSO4.770e-858.33UPF0118 membrane n=1 Tax=Chlorella sorokiniana Tax... [more]
A0A7C5D3T1_9BACT5.490e-858.33AI-2E family transporter n=1 Tax=Verrucomicrobia s... [more]
D8TRM2_VOLCA6.620e-860.42Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18135contigP-wetherbeei_contig18135:513..659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FXE7
PFAMsAI-2E_transport,DUF1639
Model size147
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.49e-11
EggNOG OGsCOG0628@1|root,2RYYV@2759|Eukaryota
DescriptionAI-2E family transporter
Cds size147
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186136.8999736-CDS-P-wetherbeei_contig18135:512..6591683186136.8999736-CDS-P-wetherbeei_contig18135:512..659Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18135 513..659 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18135.1.1prot_P-wetherbeei_contig18135.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18135 513..659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18135.1.1

>prot_P-wetherbeei_contig18135.1.1 ID=prot_P-wetherbeei_contig18135.1.1|Name=mRNA_P-wetherbeei_contig18135.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=49bp
QIYSAKLKLHPIVVLSVLYVTEHVVGVQGLILAVPVSVFLMNFLLAPPQ
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mRNA from alignment at P-wetherbeei_contig18135:513..659+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18135.1.1 ID=mRNA_P-wetherbeei_contig18135.1.1|Name=mRNA_P-wetherbeei_contig18135.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=147bp|location=Sequence derived from alignment at P-wetherbeei_contig18135:513..659+ (Phaeothamnion wetherbeei SAG_119_79)
CAGATCTACTCGGCCAAGCTGAAGCTGCACCCCATCGTGGTGCTCAGCGT GCTCTACGTCACAGAGCACGTCGTAGGCGTCCAGGGCCTCATCCTTGCCG TGCCCGTCTCGGTCTTCCTCATGAACTTTCTGCTGGCGCCGCCGCAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18135:513..659+

>mRNA_P-wetherbeei_contig18135.1.1 ID=mRNA_P-wetherbeei_contig18135.1.1|Name=mRNA_P-wetherbeei_contig18135.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=147bp|location=Sequence derived from alignment at P-wetherbeei_contig18135:513..659+ (Phaeothamnion wetherbeei SAG_119_79)
CAGATCTACTCGGCCAAGCTGAAGCTGCACCCCATCGTGGTGCTCAGCGT
GCTCTACGTCACAGAGCACGTCGTAGGCGTCCAGGGCCTCATCCTTGCCG
TGCCCGTCTCGGTCTTCCTCATGAACTTTCTGCTGGCGCCGCCGCAA
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