mRNA_P-wetherbeei_contig18106.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18106.2.1
Unique NamemRNA_P-wetherbeei_contig18106.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18106.2.1 vs. uniprot
Match: A0A182GEU4_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GEU4_AEDAL)

HSP 1 Score: 59.3 bits (142), Expect = 2.520e-8
Identity = 36/91 (39.56%), Postives = 53/91 (58.24%), Query Frame = 3
Query:    9 SFWSRLRRSMARSMMEAEYMALFEAAQTAVLLRGVLEHTCAEPPAEPTVMREDNLSCITASMASMHTRHLHHICIRYHWLRKQIRDGAISV 281
            S+ SR +  +  S MEAEY+AL EAAQ AV LRG+L+    E   +PTV+ EDN SC+  ++     +   H+  RYH+ R+ +    I +
Sbjct:  127 SWTSRKQTCVTMSTMEAEYVALSEAAQEAVWLRGLLKELN-EEQTKPTVIFEDNRSCLDFAVLDQQRKRSKHVDTRYHYTRELVTQKQIEL 216          
BLAST of mRNA_P-wetherbeei_contig18106.2.1 vs. uniprot
Match: A0A182G3L3_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182G3L3_AEDAL)

HSP 1 Score: 57.0 bits (136), Expect = 2.610e-7
Identity = 36/91 (39.56%), Postives = 50/91 (54.95%), Query Frame = 3
Query:    9 SFWSRLRRSMARSMMEAEYMALFEAAQTAVLLRGVLEHTCAEPPAEPTVMREDNLSCITASMASMHTRHLHHICIRYHWLRKQIRDGAISV 281
            S+ SR +  +A S MEAEY+AL EA+   V LR +L+    E   +PTV+ EDN SC+       H +   HI  RYH+ R+    G I +
Sbjct:  372 SWSSRKQSCVATSTMEAEYVALSEASHEVVWLRSLLKELN-EEQVKPTVVFEDNRSCLDFVALDQHKKRTKHIDTRYHYTRELSASGVIEL 461          
BLAST of mRNA_P-wetherbeei_contig18106.2.1 vs. uniprot
Match: A0A8D7ZWP4_CULPI (Copia protein n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D7ZWP4_CULPI)

HSP 1 Score: 55.8 bits (133), Expect = 6.400e-7
Identity = 37/91 (40.66%), Postives = 49/91 (53.85%), Query Frame = 3
Query:    9 SFWSRLRRSMARSMMEAEYMALFEAAQTAVLLRGVLEHTCAEPPAEPTVMREDNLSCITASMASMHTRHLHHICIRYHWLRKQIRDGAISV 281
            S+ SR +  +A S MEAEY+AL EAAQ AV LR +L     E   EPT+M EDN SCI         +   HI  +Y+  +  +  G I +
Sbjct:  262 SWGSRKQNCVATSTMEAEYVALSEAAQEAVWLRRLLCEL-GEEQKEPTIMNEDNRSCIDFVSQDRQNKRSKHIDTKYYHAKDLVTGGVIQL 351          
BLAST of mRNA_P-wetherbeei_contig18106.2.1 vs. uniprot
Match: A0A8D8IMC2_CULPI (Copia protein n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8IMC2_CULPI)

HSP 1 Score: 54.3 bits (129), Expect = 8.170e-7
Identity = 34/88 (38.64%), Postives = 49/88 (55.68%), Query Frame = 3
Query:   18 SRLRRSMARSMMEAEYMALFEAAQTAVLLRGVLEHTCAEPPAEPTVMREDNLSCITASMASMHTRHLHHICIRYHWLRKQIRDGAISV 281
            SR +  +A S MEAEY+AL EAA+ AV +R +L     E P  PT++ EDN SC+  ++     +   HI  RYH+ +     G I +
Sbjct:   46 SRKQTCVAMSTMEAEYVALSEAAREAVWMRRLLTELN-ETPKLPTIIYEDNRSCLDFAVMDQQKKRSKHIDTRYHYTKHCCSSGEIEL 132          
BLAST of mRNA_P-wetherbeei_contig18106.2.1 vs. uniprot
Match: A0A182GHA5_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GHA5_AEDAL)

HSP 1 Score: 52.8 bits (125), Expect = 1.160e-6
Identity = 31/77 (40.26%), Postives = 42/77 (54.55%), Query Frame = 3
Query:   51 MEAEYMALFEAAQTAVLLRGVLEHTCAEPPAEPTVMREDNLSCITASMASMHTRHLHHICIRYHWLRKQIRDGAISV 281
            MEAEY+AL EA+   V LR +L+    E   +PTV+ EDN SC+       H +   HI  RYH+ R+    G I +
Sbjct:    1 MEAEYVALSEASHEVVWLRSLLKELN-EEQVKPTVVFEDNRSCLDFVALDQHKKRTKHIDTRYHYTRELSASGVIEL 76          
BLAST of mRNA_P-wetherbeei_contig18106.2.1 vs. uniprot
Match: A0A427XXX1_9TREE (Uncharacterized protein n=2 Tax=Saitozyma podzolica TaxID=1890683 RepID=A0A427XXX1_9TREE)

HSP 1 Score: 53.1 bits (126), Expect = 2.290e-6
Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 3
Query:   18 SRLRRSMARSMMEAEYMALFEAAQTAVLLRGVLEHTCAEPPAEPTVMREDNLSCITASMASMHTRHLHHICIRYHWLRKQIRDGAI 275
            SR + ++A S +EAEY+A+ EAA+ AV L+G+L+     P  EPT +  DN   I  +      R   HI IR+H +R+ I DG +
Sbjct:   48 SRRQATVASSTVEAEYVAVSEAAREAVWLKGLLDELGVTPK-EPTPLWCDNQGAIRLARNPGTHRRTKHIAIRWHLIRELIEDGVV 132          
BLAST of mRNA_P-wetherbeei_contig18106.2.1 vs. uniprot
Match: A0A182H432_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182H432_AEDAL)

HSP 1 Score: 52.0 bits (123), Expect = 3.190e-6
Identity = 36/91 (39.56%), Postives = 48/91 (52.75%), Query Frame = 3
Query:    9 SFWSRLRRSMARSMMEAEYMALFEAAQTAVLLRGVLEHTCAEPPAEPTVMREDNLSCITASMASMHTRHLHHICIRYHWLRKQIRDGAISV 281
            S+ SR +  ++ S MEAEY+AL EAAQ AV LR +L+   AE   +PT + EDN SCI         +   HI  R H  +     G I +
Sbjct:    8 SWGSRKQNCVSMSTMEAEYVALSEAAQEAVWLRRLLDELGAEQE-QPTKINEDNRSCIDFVSLDRQNKRSKHIDTRRHHAKDLCAKGVIQL 97          
BLAST of mRNA_P-wetherbeei_contig18106.2.1 vs. uniprot
Match: A0A427YPN6_9TREE (Uncharacterized protein n=1 Tax=Saitozyma podzolica TaxID=1890683 RepID=A0A427YPN6_9TREE)

HSP 1 Score: 53.1 bits (126), Expect = 3.260e-6
Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 3
Query:   18 SRLRRSMARSMMEAEYMALFEAAQTAVLLRGVLEHTCAEPPAEPTVMREDNLSCITASMASMHTRHLHHICIRYHWLRKQIRDGAI 275
            SR + ++A S +EAEY+A+ EAA+ AV L+G+L+     P  EPT +  DN   I  +      R   HI IR+H +R+ I DG +
Sbjct:   11 SRRQATVASSTVEAEYVAVSEAAREAVWLKGLLDELGVTPK-EPTPLWCDNQGAIRLARNPGTHRRTKHIAIRWHLIRELIEDGVV 95          
BLAST of mRNA_P-wetherbeei_contig18106.2.1 vs. uniprot
Match: A0A7D9DPP1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9DPP1_PARCT)

HSP 1 Score: 53.9 bits (128), Expect = 3.350e-6
Identity = 31/92 (33.70%), Postives = 52/92 (56.52%), Query Frame = 3
Query:    9 SFWSRLRRSMARSMMEAEYMALFEAAQTAVLLRGVLEHTCAEPPAEPTVMREDNLSCITASMASMHTRHLHHICIRYHWLRKQIRDGAISVV 284
            S+ S+ + S+ +S  EAEY+AL +A Q A+ +RG+L     +   EPT M EDN   I  S  +       HI +R+H++R+++    + V+
Sbjct: 1157 SWCSKKQASVTKSTTEAEYVALSQATQEAIWMRGLLSDIGCKSE-EPTTMYEDNQGAIEISKNARFHNRTKHIDVRFHFVREKVLSNEVKVI 1247          
BLAST of mRNA_P-wetherbeei_contig18106.2.1 vs. uniprot
Match: A0A182GC71_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GC71_AEDAL)

HSP 1 Score: 52.0 bits (123), Expect = 3.670e-6
Identity = 34/88 (38.64%), Postives = 47/88 (53.41%), Query Frame = 3
Query:   18 SRLRRSMARSMMEAEYMALFEAAQTAVLLRGVLEHTCAEPPAEPTVMREDNLSCITASMASMHTRHLHHICIRYHWLRKQIRDGAISV 281
            SR +  +A S MEAEY+AL EA Q AV LR +L     E   +PT++ EDN SC+         +   HI  R+H+ R +   G I +
Sbjct:   13 SRKQSCVAMSTMEAEYVALSEATQEAVWLRRLLTELN-EIQRQPTIIFEDNRSCLDFVALDQQKKRSKHIDTRFHYTRSRCTSGDIEL 99          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18106.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A182GEU4_AEDAL2.520e-839.56Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
A0A182G3L3_AEDAL2.610e-739.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8D7ZWP4_CULPI6.400e-740.66Copia protein n=1 Tax=Culex pipiens TaxID=7175 Rep... [more]
A0A8D8IMC2_CULPI8.170e-738.64Copia protein n=1 Tax=Culex pipiens TaxID=7175 Rep... [more]
A0A182GHA5_AEDAL1.160e-640.26Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
A0A427XXX1_9TREE2.290e-639.53Uncharacterized protein n=2 Tax=Saitozyma podzolic... [more]
A0A182H432_AEDAL3.190e-639.56Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
A0A427YPN6_9TREE3.260e-639.53Uncharacterized protein n=1 Tax=Saitozyma podzolic... [more]
A0A7D9DPP1_PARCT3.350e-633.70Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A182GC71_AEDAL3.670e-638.64Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18106contigP-wetherbeei_contig18106:733..1034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog400682.PAC_15698807
Model size302
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.75e-07
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3A8FB@33154|Opisthokonta
Descriptiontransposition, RNA-mediated
Cds size261
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186136.3177261-UTR-P-wetherbeei_contig18106:732..7381683186136.3177261-UTR-P-wetherbeei_contig18106:732..738Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18106 733..738 -
1683186136.334424-UTR-P-wetherbeei_contig18106:999..10341683186136.334424-UTR-P-wetherbeei_contig18106:999..1034Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18106 1000..1034 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186136.32672-CDS-P-wetherbeei_contig18106:738..9991683186136.32672-CDS-P-wetherbeei_contig18106:738..999Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18106 739..999 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18106.2.1prot_P-wetherbeei_contig18106.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18106 739..999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18106.2.1

>prot_P-wetherbeei_contig18106.2.1 ID=prot_P-wetherbeei_contig18106.2.1|Name=mRNA_P-wetherbeei_contig18106.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=87bp
MARSMMEAEYMALFEAAQTAVLLRGVLEHTCAEPPAEPTVMREDNLSCIT
ASMASMHTRHLHHICIRYHWLRKQIRDGAISVVSTA*
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mRNA from alignment at P-wetherbeei_contig18106:733..1034-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18106.2.1 ID=mRNA_P-wetherbeei_contig18106.2.1|Name=mRNA_P-wetherbeei_contig18106.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=302bp|location=Sequence derived from alignment at P-wetherbeei_contig18106:733..1034- (Phaeothamnion wetherbeei SAG_119_79)
GGGTATCATCGTTTTGGAGTCGGCTCCGGCGTTCGATGGCGCGTTCAATG ATGGAGGCGGAGTATATGGCGCTATTTGAGGCGGCGCAGACGGCCGTTCT GCTGCGCGGAGTGTTGGAGCACACCTGTGCGGAACCGCCGGCCGAGCCGA CGGTGATGCGCGAGGACAACCTCTCCTGCATCACCGCATCGATGGCGTCC ATGCACACGAGGCACTTGCATCACATCTGCATCCGCTACCACTGGTTGCG GAAGCAGATCCGCGACGGCGCCATTTCGGTGGTGTCGACCGCTTAACTAA GC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18106:733..1034-

>mRNA_P-wetherbeei_contig18106.2.1 ID=mRNA_P-wetherbeei_contig18106.2.1|Name=mRNA_P-wetherbeei_contig18106.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig18106:733..1034- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCGTTCAATGATGGAGGCGGAGTATATGGCGCTATTTGAGGCGGC
GCAGACGGCCGTTCTGCTGCGCGGAGTGTTGGAGCACACCTGTGCGGAAC
CGCCGGCCGAGCCGACGGTGATGCGCGAGGACAACCTCTCCTGCATCACC
GCATCGATGGCGTCCATGCACACGAGGCACTTGCATCACATCTGCATCCG
CTACCACTGGTTGCGGAAGCAGATCCGCGACGGCGCCATTTCGGTGGTGT
CGACCGCTTAA
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