mRNA_P-wetherbeei_contig18102.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18102.1.1
Unique NamemRNA_P-wetherbeei_contig18102.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18102.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18102contigP-wetherbeei_contig18102:108..947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size618
Hectar predicted targeting categoryother localisation
Exons2
Cds size615
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186136.2849615-CDS-P-wetherbeei_contig18102:107..6981683186136.2849615-CDS-P-wetherbeei_contig18102:107..698Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18102 108..698 +
1683186136.2937229-CDS-P-wetherbeei_contig18102:921..9451683186136.2937229-CDS-P-wetherbeei_contig18102:921..945Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18102 922..945 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18102.1.1prot_P-wetherbeei_contig18102.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18102 108..945 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18102.1.1

>prot_P-wetherbeei_contig18102.1.1 ID=prot_P-wetherbeei_contig18102.1.1|Name=mRNA_P-wetherbeei_contig18102.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=205bp
TGNIDGDGSSSGDGKASGGAPAGGLALRRAYVALKTRARLHAEAAAASQQ
AERFARPSTNERAWAPAAMAAATAAAVAVDRREAWVAAKYDEARLAGQRR
EERRIIELILERDAAGAPAGAPGELFRRSGATAGNGGNGNGNNGATSSDP
DASGAARDEAEEVAAGCHLVAVDGEGRLRAEEELHCRQMAQYDVDIVAAR
SELWD
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mRNA from alignment at P-wetherbeei_contig18102:108..947+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18102.1.1 ID=mRNA_P-wetherbeei_contig18102.1.1|Name=mRNA_P-wetherbeei_contig18102.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=840bp|location=Sequence derived from alignment at P-wetherbeei_contig18102:108..947+ (Phaeothamnion wetherbeei SAG_119_79)
ACTGGTAATATTGATGGTGACGGCAGCAGTTCTGGTGACGGCAAGGCCAG
TGGCGGCGCTCCCGCCGGCGGCTTGGCACTGCGGCGCGCCTACGTTGCGC
TGAAAACGCGCGCTCGCCTCCATGCGGAGGCGGCAGCGGCAAGCCAGCAA
GCGGAGCGCTTCGCGAGACCAAGCACGAACGAAAGAGCATGGGCACCCGC
AGCAATGGCGGCAGCAACAGCGGCGGCGGTGGCGGTAGACCGGCGAGAAG
CGTGGGTGGCGGCGAAATACGACGAGGCGCGGCTGGCGGGGCAGCGGCGA
GAGGAACGGCGGATCATCGAGCTGATCTTGGAGCGTGACGCTGCCGGTGC
GCCGGCGGGGGCACCCGGAGAGCTCTTCCGACGGTCTGGCGCAACTGCCG
GAAACGGGGGCAATGGAAACGGCAACAACGGCGCAACCAGCTCGGACCCG
GATGCCTCTGGAGCCGCGAGGGACGAGGCGGAAGAGGTGGCAGCAGGTTG
CCATCTGGTCGCTGTGGATGGCGAAGGTCGGCTGCGGGCGGAAGAGGAGC
TGCACTGCCGGCAGATGGCGCAATACGACGTCGACATCGTGGTGAGTGGA
CAGCACTGCCGCCGAAAGTAATAAGGGGAGTCGGCTGGCAGGAAGAGCGC
GGCCAATGCCCATCGCAACAGCTTCAGCAAGATGTTCCGTCCCACCAGTG
CAAAATTGCTCAAACCTACTTTTCTGTCAGGCTGTTAAGATTCACCTAGC
TTGTGCAGCGCCATAAGGTCCAAGGGCTCACCTCTTTCCCTCGCTCTCTT
CCAAGTTACCGCAGGCTGCGAGATCAGAGCTGTGGGACGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18102:108..947+

>mRNA_P-wetherbeei_contig18102.1.1 ID=mRNA_P-wetherbeei_contig18102.1.1|Name=mRNA_P-wetherbeei_contig18102.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=615bp|location=Sequence derived from alignment at P-wetherbeei_contig18102:108..947+ (Phaeothamnion wetherbeei SAG_119_79)
ACTGGTAATATTGATGGTGACGGCAGCAGTTCTGGTGACGGCAAGGCCAG
TGGCGGCGCTCCCGCCGGCGGCTTGGCACTGCGGCGCGCCTACGTTGCGC
TGAAAACGCGCGCTCGCCTCCATGCGGAGGCGGCAGCGGCAAGCCAGCAA
GCGGAGCGCTTCGCGAGACCAAGCACGAACGAAAGAGCATGGGCACCCGC
AGCAATGGCGGCAGCAACAGCGGCGGCGGTGGCGGTAGACCGGCGAGAAG
CGTGGGTGGCGGCGAAATACGACGAGGCGCGGCTGGCGGGGCAGCGGCGA
GAGGAACGGCGGATCATCGAGCTGATCTTGGAGCGTGACGCTGCCGGTGC
GCCGGCGGGGGCACCCGGAGAGCTCTTCCGACGGTCTGGCGCAACTGCCG
GAAACGGGGGCAATGGAAACGGCAACAACGGCGCAACCAGCTCGGACCCG
GATGCCTCTGGAGCCGCGAGGGACGAGGCGGAAGAGGTGGCAGCAGGTTG
CCATCTGGTCGCTGTGGATGGCGAAGGTCGGCTGCGGGCGGAAGAGGAGC
TGCACTGCCGGCAGATGGCGCAATACGACGTCGACATCGTGGCTGCGAGA
TCAGAGCTGTGGGAC
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